Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000673203
Gene ID: ENSG00000163513
Gene Name: TGFBR2
Sequence (UNICHARACTER ENCODING) AUUCUUUAAAACAGCACUUUGAUUUUUUAAAAAAAUCCUCUGCACGUGUCAGGGGCCACCAUCAGCUAUAUUGUGAAAAUAAAAAGGCAGCUGGAAUUAAAUGAUGGGCCUCACUGUCUGUUUUUGCUAUAGGUGGGAACUGCAAGAUACAUGGCUCCAGAAGUCCUAGAAUCCAGGAUGAAUUUGGAGAAUGUUGAGUCCUUCAAGCAGACCGAUGUCUACUCCAUGGCUCUGGUGCUCUGGGAAAUGACAUCUCGCUGUAAUGCAGUGGGAGAAGUAAAAGAUUAUGAGCCUCCAUUUGGUUCCAAGGUGCGGGAGCACCCCUGUGUCGAAAGCAUGAAGGACAACGUGUUGAGAGAUCGAGGGCGACCAGAAAUUCCCAGCUUCUGGCUCAACCACCAGGGCAPCCAGAUGGUGUGUGAGACGUUGACUGAGUGCUGGGACCACGACCCAGAGGCCCGUCUCACAGCCCAGUGUGUGGCAGAACGCUUCAGUGAGCUGGAGCAUCUGGACAGGCUCUCGGGGAGGAGCUGCUCGGAGGAGAAGAUUCCUGAAGACGGCUCCCUAAACACUACCAAAUAGCUCUUCUGGGGCAGGCUGGGCCAUGUCCAAAGAGGCUGCCCCUCUCACCAAAGAЖCAGAGGCAGCAGGAAGCUGCCCCUGAЖCUGAUGCUUCCUGGAAAACCAAGGGGGUCACUCCCCUCCCUGUAAGCUGUGGGGAUAAGCAGAAACAACAGCAGCAGGGAGUGGGUGACAUAGAGCAUUCUAUGCCUUUGACAUUGUCAUAGGAUAAGCUGUGUUAGCACUUCCUCAGGAAAUGAGAUUGAUUUUUACAAUAGCCAAUAACAUUUGCACUPUAUUAAUGCCUGUAUAUAAAUAUGAAUAGCUAUGUUUUAUAUAUAUAUAUAUAUAUCUAUAUAUGUCUAUAGCUCUAUAUAUAUAGCCAUACCUUGAAAAGAGACAAGGAAAAACAUCAAAUAUUCCCAGGAAAUUGGUUUUAUUGGAGAACUCCAGAACCAAGCAGAGAAGGAAGGGACCCAUGACAGCAUUAGCAUUUGACAAUCACACAUGCAGUGGUUCUCUGACUGUAAAACAGUGAACUUUGCAUGAGGAAAGAGGCUCCAUGUCUCACAGCCAGCUAUGACCACAUUGCACUUGCUUUUGCAAAAUAAUCAUUCCCUGCCUAGCACUUCUCUUCUGGCCAUGGAACUAAGUACAGUGGCACUGUUUGAGGACCAGUGUUCCCGGGGUUCCUGUGUGCCCUUAUUUCUCCUGGACUUUUCAUUUAAGCUCCAAGCCCCAAAUCUGGGGGGCUAGUUUAGAAACUCUCCCUCAACCUAGUUUAGAAACUCUACCCCAUCUPUAAUACCUUGAAUGUUUUGAACCCCACUUUUUACCUUCAUGGGUUGCAGAAAAAUCAGAACAGAUGUCCCCAPCCAUGCGAUUGCCCCACCAUCUACUAAUGAAAAAUUGUUCUUUUUUUCAUCUUUCCCCUGCACUUAUGUUACUAUUCUCUGCUCCCAGCCUUCAPCCUUUUCUAAAAAGGAGCAAAUUCUCACUCUAGGCUPUAUCGUGUUUACUUUUUCAUUACACUUGACUUGAUUUUCUAGUUUUCUAUACAAACACCAAUGGGUUCCAUCUUUCUGGGCUCCUGAUUGCUCAAGCACAGUUUGGCCUGAUGAAGAGGAUUUCAACUACACAAUACUAUCAUUGUCAGGACUAUGACCUCAGGCACUCUAAЖCAUAUGUUUUGUUUGGUCAGCACAGCGUUUCAAAAAGUGAAGCCACUPUAUAAAUAUUUGGAGAUUUUGCAGGAAAAUCUGGAUCCCCAGGUAAGGAUAGCAGAUGGUUUUCAGUUAUCUCCAGUCCACGUUCACAAAAUGUGAAGGUGUGGAGACACUUACAAAGCUGCCUCACUUCUCACUGUAAЖCAUUAGCUCUUUCCACUGCCUACCUGGACCCCAGUCUAGGAAUUAAAUCUGCACCUAACCAAGGUCCCUUGUAAGAAAUGUCCAUUCAAGCAGUCAUUCUCUGGGUAUAUAAUAUGAUUUUGACUACCUUAUCUGGUGUUAAGAUUUGAAGUUGGCCUUUUAUUGGACUAAAGGGGAACUCCUPUAAGGGUCUCAGUUAGCCCAAGUUUCUUUUGCUUAUAUGUUAAUAGUUUUACCCUCUGCAUUGGAGAGAGGAGUGCUPUACUCCAAGAAGCUUUCCUCAUGGUUACCGUUCUCUCCAUCAUGCCAGCCUUCUCAACCUUUGCAGAAAUUACUAGAGAGGAUPUGAAUGUGGGACACAAAGGUCCCAUUUGCAGUUAGAAAAUUUGUGUCCACAAGGACAAGAACAAAGUAUGAGCUPUAAAACUCCAUAGGAAACUUGUUAAUCAACAAAGAAGUGUUAAUGCUGCAAGUAAUCUCUUUUUUAAAACUUUUUGAAGCUACUUAUUUUCAGCCAAAUAGGAAUAUUAGAGAGGGACUGGUAGUGAGAAUAUCAGCUCUGUUUGGAUGGUGGAAGGUCUCAUUUUAUUGAGAUUUUUAAGAUACAUGCAAAGGUUUGGAAAUAGAACCUCUAGGCACCCUCCUCAGUGUGGGUGGGCUGAGAGUUAAAGЖCAGUGUGGCUGCAGUAGCAUAGAGGCGCCUAGAAAUUCCACUUGCACCGUAGGGCAUGCUGAUACCAUCCCAAUAGCUGUUGCCCAUUGACCUCUAGUGGUGAGUUUCUAGAAUACUGGUCCAUUCAUGAGAUAUUCAAGAUUCAAGAGUAUUCUCACUUCUGGGUUAUCAGCAUAAACUGGAAUGUAGUGUCAGAGGAUACUG
Sequence (SHORT NAMES ENCODING) AUUCUUUAAAACAGCACUUUGAUUUUUUAAAAAAAUCCUCUGCACGUGUCAGGGGCCACCAUCAGCUAUAUUGUGAAAAUAAAAAGGCAGCUGGAAUUAAAUGAUGGGCCUCACUGUCUGUUUUUGCUAUAGGUGGGAACUGCAAGAUACAUGGCUCCAGAAGUCCUAGAAUCCAGGAUGAAUUUGGAGAAUGUUGAGUCCUUCAAGCAGACCGAUGUCUACUCCAUGGCUCUGGUGCUCUGGGAAAUGACAUCUCGCUGUAAUGCAGUGGGAGAAGUAAAAGAUUAUGAGCCUCCAUUUGGUUCCAAGGUGCGGGAGCACCCCUGUGUCGAAAGCAUGAAGGACAACGUGUUGAGAGAUCGAGGGCGACCAGAAAUUCCCAGCUUCUGGCUCAACCACCAGGGCAYCCAGAUGGUGUGUGAGACGUUGACUGAGUGCUGGGACCACGACCCAGAGGCCCGUCUCACAGCCCAGUGUGUGGCAGAACGCUUCAGUGAGCUGGAGCAUCUGGACAGGCUCUCGGGGAGGAGCUGCUCGGAGGAGAAGAUUCCUGAAGACGGCUCCCUAAACACUACCAAAUAGCUCUUCUGGGGCAGGCUGGGCCAUGUCCAAAGAGGCUGCCCCUCUCACCAAAGAm6ACAGAGGCAGCAGGAAGCUGCCCCUGAm6ACUGAUGCUUCCUGGAAAACCAAGGGGGUCACUCCCCUCCCUGUAAGCUGUGGGGAUAAGCAGAAACAACAGCAGCAGGGAGUGGGUGACAUAGAGCAUUCUAUGCCUUUGACAUUGUCAUAGGAUAAGCUGUGUUAGCACUUCCUCAGGAAAUGAGAUUGAUUUUUACAAUAGCCAAUAACAUUUGCACUYUAUUAAUGCCUGUAUAUAAAUAUGAAUAGCUAUGUUUUAUAUAUAUAUAUAUAUAUCUAUAUAUGUCUAUAGCUCUAUAUAUAUAGCCAUACCUUGAAAAGAGACAAGGAAAAACAUCAAAUAUUCCCAGGAAAUUGGUUUUAUUGGAGAACUCCAGAACCAAGCAGAGAAGGAAGGGACCCAUGACAGCAUUAGCAUUUGACAAUCACACAUGCAGUGGUUCUCUGACUGUAAAACAGUGAACUUUGCAUGAGGAAAGAGGCUCCAUGUCUCACAGCCAGCUAUGACCACAUUGCACUUGCUUUUGCAAAAUAAUCAUUCCCUGCCUAGCACUUCUCUUCUGGCCAUGGAACUAAGUACAGUGGCACUGUUUGAGGACCAGUGUUCCCGGGGUUCCUGUGUGCCCUUAUUUCUCCUGGACUUUUCAUUUAAGCUCCAAGCCCCAAAUCUGGGGGGCUAGUUUAGAAACUCUCCCUCAACCUAGUUUAGAAACUCUACCCCAUCUYUAAUACCUUGAAUGUUUUGAACCCCACUUUUUACCUUCAUGGGUUGCAGAAAAAUCAGAACAGAUGUCCCCAYCCAUGCGAUUGCCCCACCAUCUACUAAUGAAAAAUUGUUCUUUUUUUCAUCUUUCCCCUGCACUUAUGUUACUAUUCUCUGCUCCCAGCCUUCAYCCUUUUCUAAAAAGGAGCAAAUUCUCACUCUAGGCUYUAUCGUGUUUACUUUUUCAUUACACUUGACUUGAUUUUCUAGUUUUCUAUACAAACACCAAUGGGUUCCAUCUUUCUGGGCUCCUGAUUGCUCAAGCACAGUUUGGCCUGAUGAAGAGGAUUUCAACUACACAAUACUAUCAUUGUCAGGACUAUGACCUCAGGCACUCUAAm6ACAUAUGUUUUGUUUGGUCAGCACAGCGUUUCAAAAAGUGAAGCCACUYUAUAAAUAUUUGGAGAUUUUGCAGGAAAAUCUGGAUCCCCAGGUAAGGAUAGCAGAUGGUUUUCAGUUAUCUCCAGUCCACGUUCACAAAAUGUGAAGGUGUGGAGACACUUACAAAGCUGCCUCACUUCUCACUGUAAm6ACAUUAGCUCUUUCCACUGCCUACCUGGACCCCAGUCUAGGAAUUAAAUCUGCACCUAACCAAGGUCCCUUGUAAGAAAUGUCCAUUCAAGCAGUCAUUCUCUGGGUAUAUAAUAUGAUUUUGACUACCUUAUCUGGUGUUAAGAUUUGAAGUUGGCCUUUUAUUGGACUAAAGGGGAACUCCUYUAAGGGUCUCAGUUAGCCCAAGUUUCUUUUGCUUAUAUGUUAAUAGUUUUACCCUCUGCAUUGGAGAGAGGAGUGCUYUACUCCAAGAAGCUUUCCUCAUGGUUACCGUUCUCUCCAUCAUGCCAGCCUUCUCAACCUUUGCAGAAAUUACUAGAGAGGAUYUGAAUGUGGGACACAAAGGUCCCAUUUGCAGUUAGAAAAUUUGUGUCCACAAGGACAAGAACAAAGUAUGAGCUYUAAAACUCCAUAGGAAACUUGUUAAUCAACAAAGAAGUGUUAAUGCUGCAAGUAAUCUCUUUUUUAAAACUUUUUGAAGCUACUUAUUUUCAGCCAAAUAGGAAUAUUAGAGAGGGACUGGUAGUGAGAAUAUCAGCUCUGUUUGGAUGGUGGAAGGUCUCAUUUUAUUGAGAUUUUUAAGAUACAUGCAAAGGUUUGGAAAUAGAACCUCUAGGCACCCUCCUCAGUGUGGGUGGGCUGAGAGUUAAAGm6ACAGUGUGGCUGCAGUAGCAUAGAGGCGCCUAGAAAUUCCACUUGCACCGUAGGGCAUGCUGAUACCAUCCCAAUAGCUGUUGCCCAUUGACCUCUAGUGGUGAGUUUCUAGAAUACUGGUCCAUUCAUGAGAUAUUCAAGAUUCAAGAGUAUUCUCACUUCUGGGUUAUCAGCAUAAACUGGAAUGUAGUGUCAGAGGAUACUG
Sequence (MODOMICS CODE ENCODING) AUUCUUUAAAACAGCACUUUGAUUUUUUAAAAAAAUCCUCUGCACGUGUCAGGGGCCACCAUCAGCUAUAUUGUGAAAAUAAAAAGGCAGCUGGAAUUAAAUGAUGGGCCUCACUGUCUGUUUUUGCUAUAGGUGGGAACUGCAAGAUACAUGGCUCCAGAAGUCCUAGAAUCCAGGAUGAAUUUGGAGAAUGUUGAGUCCUUCAAGCAGACCGAUGUCUACUCCAUGGCUCUGGUGCUCUGGGAAAUGACAUCUCGCUGUAAUGCAGUGGGAGAAGUAAAAGAUUAUGAGCCUCCAUUUGGUUCCAAGGUGCGGGAGCACCCCUGUGUCGAAAGCAUGAAGGACAACGUGUUGAGAGAUCGAGGGCGACCAGAAAUUCCCAGCUUCUGGCUCAACCACCAGGGCA2000000009UCCAGAUGGUGUGUGAGACGUUGACUGAGUGCUGGGACCACGACCCAGAGGCCCGUCUCACAGCCCAGUGUGUGGCAGAACGCUUCAGUGAGCUGGAGCAUCUGGACAGGCUCUCGGGGAGGAGCUGCUCGGAGGAGAAGAUUCCUGAAGACGGCUCCCUAAACACUACCAAAUAGCUCUUCUGGGGCAGGCUGGGCCAUGUCCAAAGAGGCUGCCCCUCUCACCAAAGA2000000006ACAGAGGCAGCAGGAAGCUGCCCCUGA2000000006ACUGAUGCUUCCUGGAAAACCAAGGGGGUCACUCCCCUCCCUGUAAGCUGUGGGGAUAAGCAGAAACAACAGCAGCAGGGAGUGGGUGACAUAGAGCAUUCUAUGCCUUUGACAUUGUCAUAGGAUAAGCUGUGUUAGCACUUCCUCAGGAAAUGAGAUUGAUUUUUACAAUAGCCAAUAACAUUUGCACU2000000009UUAUUAAUGCCUGUAUAUAAAUAUGAAUAGCUAUGUUUUAUAUAUAUAUAUAUAUAUCUAUAUAUGUCUAUAGCUCUAUAUAUAUAGCCAUACCUUGAAAAGAGACAAGGAAAAACAUCAAAUAUUCCCAGGAAAUUGGUUUUAUUGGAGAACUCCAGAACCAAGCAGAGAAGGAAGGGACCCAUGACAGCAUUAGCAUUUGACAAUCACACAUGCAGUGGUUCUCUGACUGUAAAACAGUGAACUUUGCAUGAGGAAAGAGGCUCCAUGUCUCACAGCCAGCUAUGACCACAUUGCACUUGCUUUUGCAAAAUAAUCAUUCCCUGCCUAGCACUUCUCUUCUGGCCAUGGAACUAAGUACAGUGGCACUGUUUGAGGACCAGUGUUCCCGGGGUUCCUGUGUGCCCUUAUUUCUCCUGGACUUUUCAUUUAAGCUCCAAGCCCCAAAUCUGGGGGGCUAGUUUAGAAACUCUCCCUCAACCUAGUUUAGAAACUCUACCCCAUCU2000000009UUAAUACCUUGAAUGUUUUGAACCCCACUUUUUACCUUCAUGGGUUGCAGAAAAAUCAGAACAGAUGUCCCCA2000000009UCCAUGCGAUUGCCCCACCAUCUACUAAUGAAAAAUUGUUCUUUUUUUCAUCUUUCCCCUGCACUUAUGUUACUAUUCUCUGCUCCCAGCCUUCA2000000009UCCUUUUCUAAAAAGGAGCAAAUUCUCACUCUAGGCU2000000009UUAUCGUGUUUACUUUUUCAUUACACUUGACUUGAUUUUCUAGUUUUCUAUACAAACACCAAUGGGUUCCAUCUUUCUGGGCUCCUGAUUGCUCAAGCACAGUUUGGCCUGAUGAAGAGGAUUUCAACUACACAAUACUAUCAUUGUCAGGACUAUGACCUCAGGCACUCUAA2000000006ACAUAUGUUUUGUUUGGUCAGCACAGCGUUUCAAAAAGUGAAGCCACU2000000009UUAUAAAUAUUUGGAGAUUUUGCAGGAAAAUCUGGAUCCCCAGGUAAGGAUAGCAGAUGGUUUUCAGUUAUCUCCAGUCCACGUUCACAAAAUGUGAAGGUGUGGAGACACUUACAAAGCUGCCUCACUUCUCACUGUAA2000000006ACAUUAGCUCUUUCCACUGCCUACCUGGACCCCAGUCUAGGAAUUAAAUCUGCACCUAACCAAGGUCCCUUGUAAGAAAUGUCCAUUCAAGCAGUCAUUCUCUGGGUAUAUAAUAUGAUUUUGACUACCUUAUCUGGUGUUAAGAUUUGAAGUUGGCCUUUUAUUGGACUAAAGGGGAACUCCU2000000009UUAAGGGUCUCAGUUAGCCCAAGUUUCUUUUGCUUAUAUGUUAAUAGUUUUACCCUCUGCAUUGGAGAGAGGAGUGCU2000000009UUACUCCAAGAAGCUUUCCUCAUGGUUACCGUUCUCUCCAUCAUGCCAGCCUUCUCAACCUUUGCAGAAAUUACUAGAGAGGAU2000000009UUGAAUGUGGGACACAAAGGUCCCAUUUGCAGUUAGAAAAUUUGUGUCCACAAGGACAAGAACAAAGUAUGAGCU2000000009UUAAAACUCCAUAGGAAACUUGUUAAUCAACAAAGAAGUGUUAAUGCUGCAAGUAAUCUCUUUUUUAAAACUUUUUGAAGCUACUUAUUUUCAGCCAAAUAGGAAUAUUAGAGAGGGACUGGUAGUGAGAAUAUCAGCUCUGUUUGGAUGGUGGAAGGUCUCAUUUUAUUGAGAUUUUUAAGAUACAUGCAAAGGUUUGGAAAUAGAACCUCUAGGCACCCUCCUCAGUGUGGGUGGGCUGAGAGUUAAAG2000000006ACAGUGUGGCUGCAGUAGCAUAGAGGCGCCUAGAAAUUCCACUUGCACCGUAGGGCAUGCUGAUACCAUCCCAAUAGCUGUUGCCCAUUGACCUCUAGUGGUGAGUUUCUAGAAUACUGGUCCAUUCAUGAGAUAUUCAAGAUUCAAGAGUAUUCUCACUUCUGGGUUAUCAGCAUAAACUGGAAUGUAGUGUCAGAGGAUACUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 407 637 664 855 1361 1434 1529 1566 1739 1787 1927 2111 2189 2273 2348 2599
Modification Positions Y m6A m6A Y Y Y Y Y m6A Y m6A Y Y Y Y m6A
Genomic Coordinates 3:30691424:+ 3:30691654:+ 3:30691681:+ 3:30691872:+ 3:30692378:+ 3:30692451:+ 3:30692546:+ 3:30692583:+ 3:30692756:+ 3:30692804:+ 3:30692944:+ 3:30693128:+ 3:30693206:+ 3:30693290:+ 3:30693365:+ 3:30693616:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
gZuvgwMuBfgh
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
msuJfBpJvM5H
8cMbzB4aD5Se
ArijeGVTwYBw
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr