Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000438284
Gene ID: ENSG00000196639
Gene Name: HRH1
Sequence (UNICHARACTER ENCODING) AUUUCAAAGCACACCAUGCCGGCAGCACUUGGAGGUGGUAUGUGCUGGGAAACUGACCAACAGUUUAGUCAGACUGAGUCACUUCAAGGAGGGGAGUGGAGACAGCAGUGGGUGCCAGAUGACACGGAGCUGUCGGCUUCCGUGUGCAUUUUCUUUUGAUAGUAGCCGUAGAGAAGUUGUCCGCCAGGCAGCCCUCAAUGGGAUUUUUCAUUUAAGAAAAAUCACUCUGCUCGUGCACUGAUGGAGAAAUGAACUACAAGAAGCAAGCCCUGAGGUCUGGAGACAGGAAGCUACUGAAACCAGCCAGGGAGUGAGCCAUAACUGGUGGCUGCUCUUGCGCCAAUGAGCCUCCCCAAUUCCUCCUGCCUCUUAGAAGACAAGAUGUGUGAGGGCAACAAGACCACUAUGGCCAGCCCCCAGCUGAUGCCCCUGGUGGUGGUCCUGAGCACUAUCUGCUUGGUCACAGUAGGGCUCAACCUGCUGGUGCUGUAUGCCGUACGGAGUGAGCGGAAGCUCCACACUGUGGGGAACCUGUACAUCGUCAGCCUCUCGGUGGCGGЖCUUGAUCGUGGGUGCCGUCGUCAUGCCUAUGAЖCAUCCUCUACCUGCUCAUGUCCAAGUGGUCACUGGGCCGUCCUCUCUGCCUCUUUUGGCUUUCCAUGGЖCUAUGUGGCCAGCACAGCGUCCAUUUUCAGUGUCUUCAUCCUGUGCAUUGAUCGCUACCGCUCUGUCCAGCAGCCCCUCAGGUACCUUAAGUAUCGUACCAAGЖCCCGAGCCUCGGCCACCAUUCUGGGGGCCUGGUUUCUCUCUUUUCUGUGGGUUAUUCCCAUUCUAGGCUGGAAUCACUUCAUGCAGCAGACCUCGGUGCGCCGAGAGGACAAGUGUGAGACAGЖCUUCUAUGAUGUCACCUGGUUCAAGGUCAUGACUGCCAUCAUCAACUUCUACCUGCCCACCUUGCUCAUGCUCUGGUUCUAUGCCAAGAUCUACAAGGCCGUACGACAACACUGCCAGCACCGGGAGCUCAUCAAUAGGUCCCUCCCUUCCUUCUCAGAAAUUAAGCUGAGGCCAGAGAACCCCAAGGGGGAUGCCAAGAAACCAGGGAAGGAGUCUCCCUGGGAGGUUCUGAAAAGGAAGCCAAAAGAUGCUGGUGGUGGAUCUGUCUUGAAGUCACCAUCCCAAACCCCCAAGGAGAUGAAAUCCCCAGUUGUCUUCAGCCAAGAGGAUGAUAGAGAAGUAGACAAACUCUACUGCUUUCCACUUGAUAUUGUGCACAUGCAGGCUGCGGCAGAGGGGAGUAGCAGGGЖCUAUGUAGCCGUCAACCGGAGCCAUGGCCAGCUCAAGACAGAUGAGCAGGGCCUGAACACACAUGGGGCCAGCGAGAUAUCAGAGGAUCAGAUGUUAGGUGAUAGCCAAUCCUUCUCUCGAACGGЖCUCAGAUACCACCACAGAGACAGCACCAGGCAAAGGCAAAUUGAGGAGUGGGUCUAACACAGGCCUGGAUUACAUCAAGUUUACUUGGAAGAGGCUCCGCUCGCAUUCAAGACAGUAUGUAUCUGGGUUGCACAUGAACCGCGAAAGGAAGGCCGCCAAACAGUUGGGUUUUAUCAUGGCAGCCUUCAUCCUCUGCUGGAUCCCUUAUUUCAUCUUCUUCAUGGUCAUUGCCUUCUGCAAGAЖCUGUUGCAAUGAЖCAUUUGCACAUGUUCACCAUCUGGCUGGGCUACAUCAACUCCACACUGAACCCCCUCAUCUACCCCUUGUGCAAUGAGAACUUCAAGAAGACAUUCAAGAGAAUUCUGCAUAUUCGCUCCUAAGGGAGGCUCUGAGGGGAUGCAACAAAAUGAUCCUUAUGAUGUCCAACAAGGAAAUAGAGGACGAAGGCCUGUGUGUUGCCAGGCAGGCACCUGGGCUUUCUGGAAUCCAAACCACAGUCUUAGGGGCUUGGUAGUUUGGAAAGUUCUUAGGCACCAUAGAAGAACAGCAGAUGGCGGUGAUCAGCAGAGAGAUUGAACUUUGAGGAGGAAGCAGAAUCUUUGCAAGAAAGUCAGACCUGUUUCUUGUAACUGGGUUCAAAAAGAAAAAAAUAAU
Sequence (SHORT NAMES ENCODING) AUUUCAAAGCACACCAUGCCGGCAGCACUUGGAGGUGGUAUGUGCUGGGAAACUGACCAACAGUUUAGUCAGACUGAGUCACUUCAAGGAGGGGAGUGGAGACAGCAGUGGGUGCCAGAUGACACGGAGCUGUCGGCUUCCGUGUGCAUUUUCUUUUGAUAGUAGCCGUAGAGAAGUUGUCCGCCAGGCAGCCCUCAAUGGGAUUUUUCAUUUAAGAAAAAUCACUCUGCUCGUGCACUGAUGGAGAAAUGAACUACAAGAAGCAAGCCCUGAGGUCUGGAGACAGGAAGCUACUGAAACCAGCCAGGGAGUGAGCCAUAACUGGUGGCUGCUCUUGCGCCAAUGAGCCUCCCCAAUUCCUCCUGCCUCUUAGAAGACAAGAUGUGUGAGGGCAACAAGACCACUAUGGCCAGCCCCCAGCUGAUGCCCCUGGUGGUGGUCCUGAGCACUAUCUGCUUGGUCACAGUAGGGCUCAACCUGCUGGUGCUGUAUGCCGUACGGAGUGAGCGGAAGCUCCACACUGUGGGGAACCUGUACAUCGUCAGCCUCUCGGUGGCGGm6ACUUGAUCGUGGGUGCCGUCGUCAUGCCUAUGAm6ACAUCCUCUACCUGCUCAUGUCCAAGUGGUCACUGGGCCGUCCUCUCUGCCUCUUUUGGCUUUCCAUGGm6ACUAUGUGGCCAGCACAGCGUCCAUUUUCAGUGUCUUCAUCCUGUGCAUUGAUCGCUACCGCUCUGUCCAGCAGCCCCUCAGGUACCUUAAGUAUCGUACCAAGm6ACCCGAGCCUCGGCCACCAUUCUGGGGGCCUGGUUUCUCUCUUUUCUGUGGGUUAUUCCCAUUCUAGGCUGGAAUCACUUCAUGCAGCAGACCUCGGUGCGCCGAGAGGACAAGUGUGAGACAGm6ACUUCUAUGAUGUCACCUGGUUCAAGGUCAUGACUGCCAUCAUCAACUUCUACCUGCCCACCUUGCUCAUGCUCUGGUUCUAUGCCAAGAUCUACAAGGCCGUACGACAACACUGCCAGCACCGGGAGCUCAUCAAUAGGUCCCUCCCUUCCUUCUCAGAAAUUAAGCUGAGGCCAGAGAACCCCAAGGGGGAUGCCAAGAAACCAGGGAAGGAGUCUCCCUGGGAGGUUCUGAAAAGGAAGCCAAAAGAUGCUGGUGGUGGAUCUGUCUUGAAGUCACCAUCCCAAACCCCCAAGGAGAUGAAAUCCCCAGUUGUCUUCAGCCAAGAGGAUGAUAGAGAAGUAGACAAACUCUACUGCUUUCCACUUGAUAUUGUGCACAUGCAGGCUGCGGCAGAGGGGAGUAGCAGGGm6ACUAUGUAGCCGUCAACCGGAGCCAUGGCCAGCUCAAGACAGAUGAGCAGGGCCUGAACACACAUGGGGCCAGCGAGAUAUCAGAGGAUCAGAUGUUAGGUGAUAGCCAAUCCUUCUCUCGAACGGm6ACUCAGAUACCACCACAGAGACAGCACCAGGCAAAGGCAAAUUGAGGAGUGGGUCUAACACAGGCCUGGAUUACAUCAAGUUUACUUGGAAGAGGCUCCGCUCGCAUUCAAGACAGUAUGUAUCUGGGUUGCACAUGAACCGCGAAAGGAAGGCCGCCAAACAGUUGGGUUUUAUCAUGGCAGCCUUCAUCCUCUGCUGGAUCCCUUAUUUCAUCUUCUUCAUGGUCAUUGCCUUCUGCAAGAm6ACUGUUGCAAUGAm6ACAUUUGCACAUGUUCACCAUCUGGCUGGGCUACAUCAACUCCACACUGAACCCCCUCAUCUACCCCUUGUGCAAUGAGAACUUCAAGAAGACAUUCAAGAGAAUUCUGCAUAUUCGCUCCUAAGGGAGGCUCUGAGGGGAUGCAACAAAAUGAUCCUUAUGAUGUCCAACAAGGAAAUAGAGGACGAAGGCCUGUGUGUUGCCAGGCAGGCACCUGGGCUUUCUGGAAUCCAAACCACAGUCUUAGGGGCUUGGUAGUUUGGAAAGUUCUUAGGCACCAUAGAAGAACAGCAGAUGGCGGUGAUCAGCAGAGAGAUUGAACUUUGAGGAGGAAGCAGAAUCUUUGCAAGAAAGUCAGACCUGUUUCUUGUAACUGGGUUCAAAAAGAAAAAAAUAAU
Sequence (MODOMICS CODE ENCODING) AUUUCAAAGCACACCAUGCCGGCAGCACUUGGAGGUGGUAUGUGCUGGGAAACUGACCAACAGUUUAGUCAGACUGAGUCACUUCAAGGAGGGGAGUGGAGACAGCAGUGGGUGCCAGAUGACACGGAGCUGUCGGCUUCCGUGUGCAUUUUCUUUUGAUAGUAGCCGUAGAGAAGUUGUCCGCCAGGCAGCCCUCAAUGGGAUUUUUCAUUUAAGAAAAAUCACUCUGCUCGUGCACUGAUGGAGAAAUGAACUACAAGAAGCAAGCCCUGAGGUCUGGAGACAGGAAGCUACUGAAACCAGCCAGGGAGUGAGCCAUAACUGGUGGCUGCUCUUGCGCCAAUGAGCCUCCCCAAUUCCUCCUGCCUCUUAGAAGACAAGAUGUGUGAGGGCAACAAGACCACUAUGGCCAGCCCCCAGCUGAUGCCCCUGGUGGUGGUCCUGAGCACUAUCUGCUUGGUCACAGUAGGGCUCAACCUGCUGGUGCUGUAUGCCGUACGGAGUGAGCGGAAGCUCCACACUGUGGGGAACCUGUACAUCGUCAGCCUCUCGGUGGCGG2000000006ACUUGAUCGUGGGUGCCGUCGUCAUGCCUAUGA2000000006ACAUCCUCUACCUGCUCAUGUCCAAGUGGUCACUGGGCCGUCCUCUCUGCCUCUUUUGGCUUUCCAUGG2000000006ACUAUGUGGCCAGCACAGCGUCCAUUUUCAGUGUCUUCAUCCUGUGCAUUGAUCGCUACCGCUCUGUCCAGCAGCCCCUCAGGUACCUUAAGUAUCGUACCAAG2000000006ACCCGAGCCUCGGCCACCAUUCUGGGGGCCUGGUUUCUCUCUUUUCUGUGGGUUAUUCCCAUUCUAGGCUGGAAUCACUUCAUGCAGCAGACCUCGGUGCGCCGAGAGGACAAGUGUGAGACAG2000000006ACUUCUAUGAUGUCACCUGGUUCAAGGUCAUGACUGCCAUCAUCAACUUCUACCUGCCCACCUUGCUCAUGCUCUGGUUCUAUGCCAAGAUCUACAAGGCCGUACGACAACACUGCCAGCACCGGGAGCUCAUCAAUAGGUCCCUCCCUUCCUUCUCAGAAAUUAAGCUGAGGCCAGAGAACCCCAAGGGGGAUGCCAAGAAACCAGGGAAGGAGUCUCCCUGGGAGGUUCUGAAAAGGAAGCCAAAAGAUGCUGGUGGUGGAUCUGUCUUGAAGUCACCAUCCCAAACCCCCAAGGAGAUGAAAUCCCCAGUUGUCUUCAGCCAAGAGGAUGAUAGAGAAGUAGACAAACUCUACUGCUUUCCACUUGAUAUUGUGCACAUGCAGGCUGCGGCAGAGGGGAGUAGCAGGG2000000006ACUAUGUAGCCGUCAACCGGAGCCAUGGCCAGCUCAAGACAGAUGAGCAGGGCCUGAACACACAUGGGGCCAGCGAGAUAUCAGAGGAUCAGAUGUUAGGUGAUAGCCAAUCCUUCUCUCGAACGG2000000006ACUCAGAUACCACCACAGAGACAGCACCAGGCAAAGGCAAAUUGAGGAGUGGGUCUAACACAGGCCUGGAUUACAUCAAGUUUACUUGGAAGAGGCUCCGCUCGCAUUCAAGACAGUAUGUAUCUGGGUUGCACAUGAACCGCGAAAGGAAGGCCGCCAAACAGUUGGGUUUUAUCAUGGCAGCCUUCAUCCUCUGCUGGAUCCCUUAUUUCAUCUUCUUCAUGGUCAUUGCCUUCUGCAAGA2000000006ACUGUUGCAAUGA2000000006ACAUUUGCACAUGUUCACCAUCUGGCUGGGCUACAUCAACUCCACACUGAACCCCCUCAUCUACCCCUUGUGCAAUGAGAACUUCAAGAAGACAUUCAAGAGAAUUCUGCAUAUUCGCUCCUAAGGGAGGCUCUGAGGGGAUGCAACAAAAUGAUCCUUAUGAUGUCCAACAAGGAAAUAGAGGACGAAGGCCUGUGUGUUGCCAGGCAGGCACCUGGGCUUUCUGGAAUCCAAACCACAGUCUUAGGGGCUUGGUAGUUUGGAAAGUUCUUAGGCACCAUAGAAGAACAGCAGAUGGCGGUGAUCAGCAGAGAGAUUGAACUUUGAGGAGGAAGCAGAAUCUUUGCAAGAAAGUCAGACCUGUUUCUUGUAACUGGGUUCAAAAAGAAAAAAAUAAU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 560 593 662 766 890 1301 1427 1670 1683
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 3:11259255:+ 3:11259288:+ 3:11259357:+ 3:11259461:+ 3:11259585:+ 3:11259996:+ 3:11260122:+ 3:11260365:+ 3:11260378:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
aHkqKEJkRYyb
jNkxUQNx8GRd
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
6UuHp6YApVKv
jNkxUQNx8GRd
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
XUkp6ghERQML
6UuHp6YApVKv
jNkxUQNx8GRd
nGifePrmgHfe
QpiKdbVikVz2
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
6UuHp6YApVKv
jNkxUQNx8GRd
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
6UuHp6YApVKv
jNkxUQNx8GRd
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
6UuHp6YApVKv
jNkxUQNx8GRd
aJksAshEgQ8U
6UuHp6YApVKv
jNkxUQNx8GRd
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
aJksAshEgQ8U
5FhTyQVy2tKW
6UuHp6YApVKv
jNkxUQNx8GRd
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
jNkxUQNx8GRd
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML