General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000441127
Gene ID:	ENSG00000134077
Gene Name:	THUMPD3
Sequence (UNICHARACTER ENCODING)	CAAAGCGCAAAAAGAUAAAUCAGAAUUCAAGUAAAGAGAAGAUUAAUAAUGGЖCAAGAAGUCAAAAUCGAUCAGAGAAAUGUUAAAAAAGAGUUCACUAGCCAUGCUPUAGAUUCUCAUAUCUUAGAUUAUUAUGAAAAUCCAGCCAUCAAAGAGGAUGUAUCAACAUUAAUAGGUGAUGAUPUGGCAUCUUGCAAAGAUGAGЖCUGAUGAAAGCUCAAAAGAAGAAЖCUGAGCCUCAAGUGCUGAAGUUUAGAGUCACAUGCAACAGGGCAGGAGAGAAЖCAUUGCUPUACCUCAAAUGAGGCUGCAAGAGЖUUUUGGGGGUGCUGUUCAAGAUUAUUUUAAGUGGAAGGCCGACAUGACCAACUUUGAUGUGGAGGUUCUUUUGAACAPCCAUGAUAAUGAAGUCAUUGUGGGCAUUGCAUUGACUGAAGAGAGUCUCCACCGAAGAAAUAUAACACAUUUUGGACCUACAACUCUUAGAUCAACUCUUGCCUAUGGGAUGCUCAGGCUCUGUGAUCCUCUACCUUAUGAUAUAAUAGUCGAUCCAAUGUGUGGAACUGGGGCAAUACCAAUAGAGGGGGCCACUGAAUGGUCUGACUGUUUCCAUAUUGCUGGUGAUAAUAAUCCACUGGCUGUGAAUAGAGCAGCAAAUAACAUUGCAUCUPUAUUGACCAAGAGCCAAAUUAAAGAAGGGUAAAAAUUUAAAA
Sequence (SHORT NAMES ENCODING)	CAAAGCGCAAAAAGAUAAAUCAGAAUUCAAGUAAAGAGAAGAUUAAUAAUGGm6ACAAGAAGUCAAAAUCGAUCAGAGAAAUGUUAAAAAAGAGUUCACUAGCCAUGCUYUAGAUUCUCAUAUCUUAGAUUAUUAUGAAAAUCCAGCCAUCAAAGAGGAUGUAUCAACAUUAAUAGGUGAUGAUYUGGCAUCUUGCAAAGAUGAGm6ACUGAUGAAAGCUCAAAAGAAGAAm6ACUGAGCCUCAAGUGCUGAAGUUUAGAGUCACAUGCAACAGGGCAGGAGAGAAm6ACAUUGCUYUACCUCAAAUGAGGCUGCAAGAGm6AUUUUGGGGGUGCUGUUCAAGAUUAUUUUAAGUGGAAGGCCGACAUGACCAACUUUGAUGUGGAGGUUCUUUUGAACAYCCAUGAUAAUGAAGUCAUUGUGGGCAUUGCAUUGACUGAAGAGAGUCUCCACCGAAGAAAUAUAACACAUUUUGGACCUACAACUCUUAGAUCAACUCUUGCCUAUGGGAUGCUCAGGCUCUGUGAUCCUCUACCUUAUGAUAUAAUAGUCGAUCCAAUGUGUGGAACUGGGGCAAUACCAAUAGAGGGGGCCACUGAAUGGUCUGACUGUUUCCAUAUUGCUGGUGAUAAUAAUCCACUGGCUGUGAAUAGAGCAGCAAAUAACAUUGCAUCUYUAUUGACCAAGAGCCAAAUUAAAGAAGGGUAAAAAUUUAAAA
Sequence (MODOMICS CODE ENCODING)	CAAAGCGCAAAAAGAUAAAUCAGAAUUCAAGUAAAGAGAAGAUUAAUAAUGG2000000006ACAAGAAGUCAAAAUCGAUCAGAGAAAUGUUAAAAAAGAGUUCACUAGCCAUGCU2000000009UUAGAUUCUCAUAUCUUAGAUUAUUAUGAAAAUCCAGCCAUCAAAGAGGAUGUAUCAACAUUAAUAGGUGAUGAU2000000009UUGGCAUCUUGCAAAGAUGAG2000000006ACUGAUGAAAGCUCAAAAGAAGAA2000000006ACUGAGCCUCAAGUGCUGAAGUUUAGAGUCACAUGCAACAGGGCAGGAGAGAA2000000006ACAUUGCU2000000009UUACCUCAAAUGAGGCUGCAAGAG2000000006AUUUUGGGGGUGCUGUUCAAGAUUAUUUUAAGUGGAAGGCCGACAUGACCAACUUUGAUGUGGAGGUUCUUUUGAACA2000000009UCCAUGAUAAUGAAGUCAUUGUGGGCAUUGCAUUGACUGAAGAGAGUCUCCACCGAAGAAAUAUAACACAUUUUGGACCUACAACUCUUAGAUCAACUCUUGCCUAUGGGAUGCUCAGGCUCUGUGAUCCUCUACCUUAUGAUAUAAUAGUCGAUCCAAUGUGUGGAACUGGGGCAAUACCAAUAGAGGGGGCCACUGAAUGGUCUGACUGUUUCCAUAUUGCUGGUGAUAAUAAUCCACUGGCUGUGAAUAGAGCAGCAAAUAACAUUGCAUCU2000000009UUAUUGACCAAGAGCCAAAUUAAAGAAGGGUAAAAAUUUAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	53	108	183	204	228	281	289	313	391	666
Modification Positions	m6A	Y	Y	m6A	m6A	m6A	Y	m6A	Y	Y
Genomic Coordinates	3:9371212:+	3:9371267:+	3:9371342:+	3:9371363:+	3:9371387:+	3:9371440:+	3:9371448:+	3:9371472:+	3:9374529:+	3:9380590:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	aJksAshEgQ8U Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	6UuHp6YApVKv UN3tNpbCPHYf VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	5aTkEfEpX8Xm msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8