Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000460495
Gene ID: ENSG00000114098
Gene Name: ARMC8
Sequence (UNICHARACTER ENCODING) CAUUUUUUGUUUGUUCAUUUAUUUUUACAGGUUCGAAUGCAAGCACUGAAAUGUUUCUCAGUUUUAGCUUUUGAAAACCCCCAGGUAUCGAUGACCCUGGUAAAUGGUAGGCUGGAGCUUUCAGUGGCACCUACAUGAUUUAAUUGAUGAACUUUUUAGAUUUAAAGAAUUUCCUUAAUCAUUGUUGUUUGUUUUAUUUCUAGUUUUGGUUGAUGGAGAAUUGUUACCACAGAUUUUUGUGAAGAUGUUACAGAGGGAUAAGCCUAUUGAGAUGCAGCUCACAUCAGCAAAAUGUUUAЖCUUACAUGUGUAGAGCUGGAGCAAUUCGGЖCAGAUGAUAACUGUAUUGUAUUAAAGACAUUACCUUGUUUGGUUCGAAUGUGCAGUAAGGAGAGAUUACUAGAGGAGAGAGUUGAAGGAGCUGAGACACUUGCCUAUCUGAUUGAACCAGAUGUUGAGCUACAGAGAAUCGCUAGCAUAACUGAUCACCUCAUUGCCAUGCUUGCUGAUUAUUUCAAGUAUCCCAGCUCAGUGAGUGCCAUCACUGAUAUUAAAAGGCUUGAUCAUGAUUUAAAACAUGCUCACGAACUCCGCCAGGCUGCAUUCAAGCUCUAUGCCUCUCUUGGAGCAAAUGAUGAAGACAUCCGGAAGAAGAUCAUUGAGACUGAAAAUAUGAUGGACCGAAUUGUGACUGGCUUGUCUGAGUCUAGUGUCAAGGUGCGGUUAGCUGCCGUCAGAUGUUUGCACAGUUUAUCCAGAUCUGUGCAGCAGCUUCGAACCAGUUUCCAGGAUCAUGCUGUUUGGAAACCUUUAAUGAAGGUUUUACAAAAUGCACCAGAUGAAAUCCUAGUGGUAGCAUCUUCCAUGCUGUGUAAUCUUCUUCUUGAAUUUUCUCCAAGCAAAGAGCCAAUUUUGGAAUCAGGAGCCGUAGAGCUACUUUGUGGAUUAACUCAGAGUGAAAAUCCUGCUUUACGAGUGAAUGGAAUUUGGGCUUUAAUGAAUAUGGCAUUUCAGGCUGAACAAAAAAUAAAAGCAGAUAUUUUACGAAGCUUGAGUACUGAACAGCUAUUCCGGUUAUUAUCAGAUUCAGAUUUGAAUGUGCUGAUGAAGACAUUGGGACUUCUUAGAAAUCUCCUCUCCACUCGUCCUCAUAUAGAUAAAAUAAUGAGUACUCAUGGAAAGCAAAUUAUGCAAGCCGUCACUCUUAUUCUAGAAGGGGAACAUAACAUUGAGGUCAAAGAGCAGACACUGUGCAUCUUAGCCAACAUAGCGGAUGGGACAACAGCAAAAGAUCUUAUUAUGACCAAUGAUGAUAUCCUACAGAAAAUCAAGUAUUACAUGGGCCAUUCACAUGUUAAACUGCAGCUUGCAGCCAUGUUUUGUAUAUCAAACCUCAUAUGGAAUGAAGAGGAAGGUUCACAAGAACGCCAGGAUAAAUUACGAGACAUGGGCAUCGUAGAUAUUCUACACAAACUGAGUCAGUCACCAGAUUCAAACCUUUGUGACAAGGCAAAGAUGGCACUGCAGCAGUACCUGGCAUGAUGGGAGUGCCCCUGGGCACCUGCGAGCAUCCCACCUCCUUGUUUAAGGAAGUACAGGAACCAGCCUCAUUUGAUUCCUUCUAUUUGCACAAGUCACCUUGGЖCUGCAGGGAGCUGUUUUGCAAAAGCAGUUUAGUAGGCUUAGAUCUCAAAUUCAUCUUGAGAЖCAUUUUUUUGAGGUAGUAAUUUCCUCAGAAGACUCUUGUGUUUUGUUUUGGUUUUUUUUUCUGAGCUACUCGGЖCUCUUUAUUAGAACAAUCAAUCAUUUUCCUUUGGЖCCUACAAUUUUUGCCUAUGCUGCAGCCACUUUGUGAGUGAGAAUGAAUAUGUCUGUGUGAACACACAGGCAUGCGUGUGUAUGUGCACGUACAUGGGCCAGAAUGAAUGGAUGUGUGUGUGUGAGGGAUACCUCAGAUUUUUCUUUUCUUAUUUUGUGUGAAAAUCUCUUUUCUACAGAUUUUCCAGGGUUUAAGCAUUGCUUGCUGUAUAAAAAACUPUACUGAAUUAUAUACAGUUUGAAUGAAAUGUUAUUUUAAAAACAAAACAAUUGUUAAGUGUUCCAUAAAGGUUAUGUUGAAUUUUGGUCAGAUGAAUAUUUGUAAGUAAAAAAUAUAUGCAUUUCUGAACCUCAACUUACAUAGAUUUUCUUUAUAU
Sequence (SHORT NAMES ENCODING) CAUUUUUUGUUUGUUCAUUUAUUUUUACAGGUUCGAAUGCAAGCACUGAAAUGUUUCUCAGUUUUAGCUUUUGAAAACCCCCAGGUAUCGAUGACCCUGGUAAAUGGUAGGCUGGAGCUUUCAGUGGCACCUACAUGAUUUAAUUGAUGAACUUUUUAGAUUUAAAGAAUUUCCUUAAUCAUUGUUGUUUGUUUUAUUUCUAGUUUUGGUUGAUGGAGAAUUGUUACCACAGAUUUUUGUGAAGAUGUUACAGAGGGAUAAGCCUAUUGAGAUGCAGCUCACAUCAGCAAAAUGUUUAm6ACUUACAUGUGUAGAGCUGGAGCAAUUCGGm6ACAGAUGAUAACUGUAUUGUAUUAAAGACAUUACCUUGUUUGGUUCGAAUGUGCAGUAAGGAGAGAUUACUAGAGGAGAGAGUUGAAGGAGCUGAGACACUUGCCUAUCUGAUUGAACCAGAUGUUGAGCUACAGAGAAUCGCUAGCAUAACUGAUCACCUCAUUGCCAUGCUUGCUGAUUAUUUCAAGUAUCCCAGCUCAGUGAGUGCCAUCACUGAUAUUAAAAGGCUUGAUCAUGAUUUAAAACAUGCUCACGAACUCCGCCAGGCUGCAUUCAAGCUCUAUGCCUCUCUUGGAGCAAAUGAUGAAGACAUCCGGAAGAAGAUCAUUGAGACUGAAAAUAUGAUGGACCGAAUUGUGACUGGCUUGUCUGAGUCUAGUGUCAAGGUGCGGUUAGCUGCCGUCAGAUGUUUGCACAGUUUAUCCAGAUCUGUGCAGCAGCUUCGAACCAGUUUCCAGGAUCAUGCUGUUUGGAAACCUUUAAUGAAGGUUUUACAAAAUGCACCAGAUGAAAUCCUAGUGGUAGCAUCUUCCAUGCUGUGUAAUCUUCUUCUUGAAUUUUCUCCAAGCAAAGAGCCAAUUUUGGAAUCAGGAGCCGUAGAGCUACUUUGUGGAUUAACUCAGAGUGAAAAUCCUGCUUUACGAGUGAAUGGAAUUUGGGCUUUAAUGAAUAUGGCAUUUCAGGCUGAACAAAAAAUAAAAGCAGAUAUUUUACGAAGCUUGAGUACUGAACAGCUAUUCCGGUUAUUAUCAGAUUCAGAUUUGAAUGUGCUGAUGAAGACAUUGGGACUUCUUAGAAAUCUCCUCUCCACUCGUCCUCAUAUAGAUAAAAUAAUGAGUACUCAUGGAAAGCAAAUUAUGCAAGCCGUCACUCUUAUUCUAGAAGGGGAACAUAACAUUGAGGUCAAAGAGCAGACACUGUGCAUCUUAGCCAACAUAGCGGAUGGGACAACAGCAAAAGAUCUUAUUAUGACCAAUGAUGAUAUCCUACAGAAAAUCAAGUAUUACAUGGGCCAUUCACAUGUUAAACUGCAGCUUGCAGCCAUGUUUUGUAUAUCAAACCUCAUAUGGAAUGAAGAGGAAGGUUCACAAGAACGCCAGGAUAAAUUACGAGACAUGGGCAUCGUAGAUAUUCUACACAAACUGAGUCAGUCACCAGAUUCAAACCUUUGUGACAAGGCAAAGAUGGCACUGCAGCAGUACCUGGCAUGAUGGGAGUGCCCCUGGGCACCUGCGAGCAUCCCACCUCCUUGUUUAAGGAAGUACAGGAACCAGCCUCAUUUGAUUCCUUCUAUUUGCACAAGUCACCUUGGm6ACUGCAGGGAGCUGUUUUGCAAAAGCAGUUUAGUAGGCUUAGAUCUCAAAUUCAUCUUGAGAm6ACAUUUUUUUGAGGUAGUAAUUUCCUCAGAAGACUCUUGUGUUUUGUUUUGGUUUUUUUUUCUGAGCUACUCGGm6ACUCUUUAUUAGAACAAUCAAUCAUUUUCCUUUGGm6ACCUACAAUUUUUGCCUAUGCUGCAGCCACUUUGUGAGUGAGAAUGAAUAUGUCUGUGUGAACACACAGGCAUGCGUGUGUAUGUGCACGUACAUGGGCCAGAAUGAAUGGAUGUGUGUGUGUGAGGGAUACCUCAGAUUUUUCUUUUCUUAUUUUGUGUGAAAAUCUCUUUUCUACAGAUUUUCCAGGGUUUAAGCAUUGCUUGCUGUAUAAAAAACUYUACUGAAUUAUAUACAGUUUGAAUGAAAUGUUAUUUUAAAAACAAAACAAUUGUUAAGUGUUCCAUAAAGGUUAUGUUGAAUUUUGGUCAGAUGAAUAUUUGUAAGUAAAAAAUAUAUGCAUUUCUGAACCUCAACUUACAUAGAUUUUCUUUAUAU
Sequence (MODOMICS CODE ENCODING) CAUUUUUUGUUUGUUCAUUUAUUUUUACAGGUUCGAAUGCAAGCACUGAAAUGUUUCUCAGUUUUAGCUUUUGAAAACCCCCAGGUAUCGAUGACCCUGGUAAAUGGUAGGCUGGAGCUUUCAGUGGCACCUACAUGAUUUAAUUGAUGAACUUUUUAGAUUUAAAGAAUUUCCUUAAUCAUUGUUGUUUGUUUUAUUUCUAGUUUUGGUUGAUGGAGAAUUGUUACCACAGAUUUUUGUGAAGAUGUUACAGAGGGAUAAGCCUAUUGAGAUGCAGCUCACAUCAGCAAAAUGUUUA2000000006ACUUACAUGUGUAGAGCUGGAGCAAUUCGG2000000006ACAGAUGAUAACUGUAUUGUAUUAAAGACAUUACCUUGUUUGGUUCGAAUGUGCAGUAAGGAGAGAUUACUAGAGGAGAGAGUUGAAGGAGCUGAGACACUUGCCUAUCUGAUUGAACCAGAUGUUGAGCUACAGAGAAUCGCUAGCAUAACUGAUCACCUCAUUGCCAUGCUUGCUGAUUAUUUCAAGUAUCCCAGCUCAGUGAGUGCCAUCACUGAUAUUAAAAGGCUUGAUCAUGAUUUAAAACAUGCUCACGAACUCCGCCAGGCUGCAUUCAAGCUCUAUGCCUCUCUUGGAGCAAAUGAUGAAGACAUCCGGAAGAAGAUCAUUGAGACUGAAAAUAUGAUGGACCGAAUUGUGACUGGCUUGUCUGAGUCUAGUGUCAAGGUGCGGUUAGCUGCCGUCAGAUGUUUGCACAGUUUAUCCAGAUCUGUGCAGCAGCUUCGAACCAGUUUCCAGGAUCAUGCUGUUUGGAAACCUUUAAUGAAGGUUUUACAAAAUGCACCAGAUGAAAUCCUAGUGGUAGCAUCUUCCAUGCUGUGUAAUCUUCUUCUUGAAUUUUCUCCAAGCAAAGAGCCAAUUUUGGAAUCAGGAGCCGUAGAGCUACUUUGUGGAUUAACUCAGAGUGAAAAUCCUGCUUUACGAGUGAAUGGAAUUUGGGCUUUAAUGAAUAUGGCAUUUCAGGCUGAACAAAAAAUAAAAGCAGAUAUUUUACGAAGCUUGAGUACUGAACAGCUAUUCCGGUUAUUAUCAGAUUCAGAUUUGAAUGUGCUGAUGAAGACAUUGGGACUUCUUAGAAAUCUCCUCUCCACUCGUCCUCAUAUAGAUAAAAUAAUGAGUACUCAUGGAAAGCAAAUUAUGCAAGCCGUCACUCUUAUUCUAGAAGGGGAACAUAACAUUGAGGUCAAAGAGCAGACACUGUGCAUCUUAGCCAACAUAGCGGAUGGGACAACAGCAAAAGAUCUUAUUAUGACCAAUGAUGAUAUCCUACAGAAAAUCAAGUAUUACAUGGGCCAUUCACAUGUUAAACUGCAGCUUGCAGCCAUGUUUUGUAUAUCAAACCUCAUAUGGAAUGAAGAGGAAGGUUCACAAGAACGCCAGGAUAAAUUACGAGACAUGGGCAUCGUAGAUAUUCUACACAAACUGAGUCAGUCACCAGAUUCAAACCUUUGUGACAAGGCAAAGAUGGCACUGCAGCAGUACCUGGCAUGAUGGGAGUGCCCCUGGGCACCUGCGAGCAUCCCACCUCCUUGUUUAAGGAAGUACAGGAACCAGCCUCAUUUGAUUCCUUCUAUUUGCACAAGUCACCUUGG2000000006ACUGCAGGGAGCUGUUUUGCAAAAGCAGUUUAGUAGGCUUAGAUCUCAAAUUCAUCUUGAGA2000000006ACAUUUUUUUGAGGUAGUAAUUUCCUCAGAAGACUCUUGUGUUUUGUUUUGGUUUUUUUUUCUGAGCUACUCGG2000000006ACUCUUUAUUAGAACAAUCAAUCAUUUUCCUUUGG2000000006ACCUACAAUUUUUGCCUAUGCUGCAGCCACUUUGUGAGUGAGAAUGAAUAUGUCUGUGUGAACACACAGGCAUGCGUGUGUAUGUGCACGUACAUGGGCCAGAAUGAAUGGAUGUGUGUGUGUGAGGGAUACCUCAGAUUUUUCUUUUCUUAUUUUGUGUGAAAAUCUCUUUUCUACAGAUUUUCCAGGGUUUAAGCAUUGCUUGCUGUAUAAAAAACU2000000009UUACUGAAUUAUAUACAGUUUGAAUGAAAUGUUAUUUUAAAAACAAAACAAUUGUUAAGUGUUCCAUAAAGGUUAUGUUGAAUUUUGGUCAGAUGAAUAUUUGUAAGUAAAAAAUAUAUGCAUUUCUGAACCUCAACUUACAUAGAUUUUCUUUAUAU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 299 329 1642 1704 1778 1813 2032
Modification Positions m6A m6A m6A m6A m6A m6A Y
Genomic Coordinates 3:138239472:+ 3:138239502:+ 3:138295994:+ 3:138296056:+ 3:138296130:+ 3:138296165:+ 3:138296384:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
8cMbzB4aD5Se
ArijeGVTwYBw
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
dknfVe6BK8aP
8cMbzB4aD5Se
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
VyCX26p5UBRL
8cMbzB4aD5Se
93arJtwJmuS9
ArijeGVTwYBw
WiQcrNTGZHPT
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
BkoLW2CBToyL
KTLz8piFYdwC
WiQcrNTGZHPT
Lny8GcCeVGc9
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP