General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000492552
Gene ID:	ENSG00000174738
Gene Name:	NR1D2
Sequence (UNICHARACTER ENCODING)	CCCUCCUCCCCCGCGGGGUUGCACACUGCGGAGGAGGCCGCGCGUGCGCGCCCGCUGAGCCCCCGCGGCGGGGCGUCCCCGAAGCGGGCGCUGACACCGCAGUGCACCGGACGCCGCACGCUCUUUUCGCGAGGAGGUGUGAUUGCCUAUAUCAGUUCUUCCAGCUCAGCCUCAAGCCCUGCCUCUUGUCACAGUGAGGGUUCUGAGAAUAGUUUCCAGUCCUCCUCCUCUUCUGUUCCAUCUUCUCCAAAUAGCUCUAAUUCUGAUACCAAUGGUAAUCCCAAGAAUGGUGAUCUCGCCAAUAUUGAAGGCAUCUUGAAGAAUGAUCGAAUAGAUUGUUCUAUGAAAACAAGCAAAUCGAGUGCACCUGGGAUGACAAAAAGUCAUAGUGGUGUGACAAAAUUUAGUGGCAUGGUUCUACUGUGUAAAGUCUGUGGGGAUGUGGCGUCAGGAUUCCACUAUGGAGUUCAUGCUUGCGAAGGCUGUAAGGGUUUCUUUCGGAGAAGUAUUCAACAAAACAUCCAGUACAAGAAGUGCCUGAAGAAUGAAAACUGUUCUAUAAUGAGAAUGAAUAGGAACAGAUGUCAGCAAUGUCGCUUCAAAAAGUGUCUGUCUGUUGGAAUGUCAAGAGAUGCUGUUCGGUUUGGUCGUAUUCCUAAGCGUGAAAAACAGAGGAUGCUAAUUGAAAUGCAAAGUGCAAUGAAGACCAUGAUGAACAGCCAGUUCAGUGGUCACUUGCAAAAUGACACAUUAGUAGAACAUCAUGAЖCAGACAGCCUUGCCAGCCCAGGAACAGCUGCGACCCAAGCCCCAACUGGAGCAAGAAAACAUCAAAAGCUCUUCUCCUCCAUCUUCUGAUUUUGCAAAGGAAGAAGUGAUUGGCAUGGUGACCAGAGCUCACAAGGAUACCUUUAUGUAUAAUCAAGAGCAGCAAGAAAACUCAGCUGAGAGCAUGCAGCCCCAGAGAGGAGAACGGAUUCCCAAGAACAUGGAGCAAUAUAAUUUAAAUCAUGAUCAUUGCGGCAAUGGGCUUAGCAGCCAUUUUCCCUGUAGUGAGAGCCAGCAGCAUCUCAAUGGЖCAGUUCAAAGGGAGGAAUAUAAUGCAUUACCCAAAUGGUCAUGCCAUUUGUAUUGCAAAUGGЖCAUUGUAUGAЖCUUCUCCAAUGCUUAUACUCAAAGAGUAUGUGAUAGAGUUCCGAUAGAUGGAUUUUCUCAGAAUGAGAACAAGAAUAGUUACCUGUGCAACACUGGAGGAAGAAUGCAUCUGGUUUGUCCAAUGAGUAAGUCUCCAUAUGUGGAUCCUCAUAAAUCAGGACAUGAAAUCUGGGAAGAAUUUUCGAUGAGCUUCACUCCAGCAGUGAAAGAAGUGGUGGAAUUUGCAAAGCGUAUUCCUGGGUUCAGAGAUCUCUCUCAGCAUGACCAGGUCAACCUUUUAAAGGCUGGGЖCUUUUGAGGUUUUAAUGGUACGGUUCGCAUCAUUAUUUGAUGCAAAGGAACGUACUGUCACCUUUUUAAGUGGAAAGAAAUAUAGUGUGGAUGAUUUACACUCAAUGGGAGCAGGGGAUCUGCUAAACUCUAUGUUUGAAUUUAGUGAGAAGCUAAAUGCCCUCCAACUUAGUGAUGAAGAGAUGAGUUUGUUUACAGCUGUUGUCCUGGUAUCUGCAGAUCGAUCUGGAAUAGAAAACGUCAACUCUGUGGAGGCUUUGCAGGAAACUCUCAUUCGUGCACUAAGGЖCCUUAAUAAUGAAAAACCAUCCAAAUGAGGCCUCUAUUUUUACAAAЖCUGCUUCUAAAGUUGCCAGAUCUUCGAUCUPUAAACAACAUGCACUCUGAGGAGCUCUUGGCCUUUAAAGUUCACCCUUAAGGCCUUUGUUUAUUUAAACAUGAЖCUGAUGGUAЖCUGUACAUUUUGUGCUAAAAUGCAUAUUUAUAUGUGUAUACCAUAUGUGGAGAUAGAAAAGЖCCUPUAAGACAAUAAAAGAUUGUAGGCU
Sequence (SHORT NAMES ENCODING)	CCCUCCUCCCCCGCGGGGUUGCACACUGCGGAGGAGGCCGCGCGUGCGCGCCCGCUGAGCCCCCGCGGCGGGGCGUCCCCGAAGCGGGCGCUGACACCGCAGUGCACCGGACGCCGCACGCUCUUUUCGCGAGGAGGUGUGAUUGCCUAUAUCAGUUCUUCCAGCUCAGCCUCAAGCCCUGCCUCUUGUCACAGUGAGGGUUCUGAGAAUAGUUUCCAGUCCUCCUCCUCUUCUGUUCCAUCUUCUCCAAAUAGCUCUAAUUCUGAUACCAAUGGUAAUCCCAAGAAUGGUGAUCUCGCCAAUAUUGAAGGCAUCUUGAAGAAUGAUCGAAUAGAUUGUUCUAUGAAAACAAGCAAAUCGAGUGCACCUGGGAUGACAAAAAGUCAUAGUGGUGUGACAAAAUUUAGUGGCAUGGUUCUACUGUGUAAAGUCUGUGGGGAUGUGGCGUCAGGAUUCCACUAUGGAGUUCAUGCUUGCGAAGGCUGUAAGGGUUUCUUUCGGAGAAGUAUUCAACAAAACAUCCAGUACAAGAAGUGCCUGAAGAAUGAAAACUGUUCUAUAAUGAGAAUGAAUAGGAACAGAUGUCAGCAAUGUCGCUUCAAAAAGUGUCUGUCUGUUGGAAUGUCAAGAGAUGCUGUUCGGUUUGGUCGUAUUCCUAAGCGUGAAAAACAGAGGAUGCUAAUUGAAAUGCAAAGUGCAAUGAAGACCAUGAUGAACAGCCAGUUCAGUGGUCACUUGCAAAAUGACACAUUAGUAGAACAUCAUGAm6ACAGACAGCCUUGCCAGCCCAGGAACAGCUGCGACCCAAGCCCCAACUGGAGCAAGAAAACAUCAAAAGCUCUUCUCCUCCAUCUUCUGAUUUUGCAAAGGAAGAAGUGAUUGGCAUGGUGACCAGAGCUCACAAGGAUACCUUUAUGUAUAAUCAAGAGCAGCAAGAAAACUCAGCUGAGAGCAUGCAGCCCCAGAGAGGAGAACGGAUUCCCAAGAACAUGGAGCAAUAUAAUUUAAAUCAUGAUCAUUGCGGCAAUGGGCUUAGCAGCCAUUUUCCCUGUAGUGAGAGCCAGCAGCAUCUCAAUGGm6ACAGUUCAAAGGGAGGAAUAUAAUGCAUUACCCAAAUGGUCAUGCCAUUUGUAUUGCAAAUGGm6ACAUUGUAUGAm6ACUUCUCCAAUGCUUAUACUCAAAGAGUAUGUGAUAGAGUUCCGAUAGAUGGAUUUUCUCAGAAUGAGAACAAGAAUAGUUACCUGUGCAACACUGGAGGAAGAAUGCAUCUGGUUUGUCCAAUGAGUAAGUCUCCAUAUGUGGAUCCUCAUAAAUCAGGACAUGAAAUCUGGGAAGAAUUUUCGAUGAGCUUCACUCCAGCAGUGAAAGAAGUGGUGGAAUUUGCAAAGCGUAUUCCUGGGUUCAGAGAUCUCUCUCAGCAUGACCAGGUCAACCUUUUAAAGGCUGGGm6ACUUUUGAGGUUUUAAUGGUACGGUUCGCAUCAUUAUUUGAUGCAAAGGAACGUACUGUCACCUUUUUAAGUGGAAAGAAAUAUAGUGUGGAUGAUUUACACUCAAUGGGAGCAGGGGAUCUGCUAAACUCUAUGUUUGAAUUUAGUGAGAAGCUAAAUGCCCUCCAACUUAGUGAUGAAGAGAUGAGUUUGUUUACAGCUGUUGUCCUGGUAUCUGCAGAUCGAUCUGGAAUAGAAAACGUCAACUCUGUGGAGGCUUUGCAGGAAACUCUCAUUCGUGCACUAAGGm6ACCUUAAUAAUGAAAAACCAUCCAAAUGAGGCCUCUAUUUUUACAAAm6ACUGCUUCUAAAGUUGCCAGAUCUUCGAUCUYUAAACAACAUGCACUCUGAGGAGCUCUUGGCCUUUAAAGUUCACCCUUAAGGCCUUUGUUUAUUUAAACAUGAm6ACUGAUGGUAm6ACUGUACAUUUUGUGCUAAAAUGCAUAUUUAUAUGUGUAUACCAUAUGUGGAGAUAGAAAAGm6ACCUYUAAGACAAUAAAAGAUUGUAGGCU
Sequence (MODOMICS CODE ENCODING)	CCCUCCUCCCCCGCGGGGUUGCACACUGCGGAGGAGGCCGCGCGUGCGCGCCCGCUGAGCCCCCGCGGCGGGGCGUCCCCGAAGCGGGCGCUGACACCGCAGUGCACCGGACGCCGCACGCUCUUUUCGCGAGGAGGUGUGAUUGCCUAUAUCAGUUCUUCCAGCUCAGCCUCAAGCCCUGCCUCUUGUCACAGUGAGGGUUCUGAGAAUAGUUUCCAGUCCUCCUCCUCUUCUGUUCCAUCUUCUCCAAAUAGCUCUAAUUCUGAUACCAAUGGUAAUCCCAAGAAUGGUGAUCUCGCCAAUAUUGAAGGCAUCUUGAAGAAUGAUCGAAUAGAUUGUUCUAUGAAAACAAGCAAAUCGAGUGCACCUGGGAUGACAAAAAGUCAUAGUGGUGUGACAAAAUUUAGUGGCAUGGUUCUACUGUGUAAAGUCUGUGGGGAUGUGGCGUCAGGAUUCCACUAUGGAGUUCAUGCUUGCGAAGGCUGUAAGGGUUUCUUUCGGAGAAGUAUUCAACAAAACAUCCAGUACAAGAAGUGCCUGAAGAAUGAAAACUGUUCUAUAAUGAGAAUGAAUAGGAACAGAUGUCAGCAAUGUCGCUUCAAAAAGUGUCUGUCUGUUGGAAUGUCAAGAGAUGCUGUUCGGUUUGGUCGUAUUCCUAAGCGUGAAAAACAGAGGAUGCUAAUUGAAAUGCAAAGUGCAAUGAAGACCAUGAUGAACAGCCAGUUCAGUGGUCACUUGCAAAAUGACACAUUAGUAGAACAUCAUGA2000000006ACAGACAGCCUUGCCAGCCCAGGAACAGCUGCGACCCAAGCCCCAACUGGAGCAAGAAAACAUCAAAAGCUCUUCUCCUCCAUCUUCUGAUUUUGCAAAGGAAGAAGUGAUUGGCAUGGUGACCAGAGCUCACAAGGAUACCUUUAUGUAUAAUCAAGAGCAGCAAGAAAACUCAGCUGAGAGCAUGCAGCCCCAGAGAGGAGAACGGAUUCCCAAGAACAUGGAGCAAUAUAAUUUAAAUCAUGAUCAUUGCGGCAAUGGGCUUAGCAGCCAUUUUCCCUGUAGUGAGAGCCAGCAGCAUCUCAAUGG2000000006ACAGUUCAAAGGGAGGAAUAUAAUGCAUUACCCAAAUGGUCAUGCCAUUUGUAUUGCAAAUGG2000000006ACAUUGUAUGA2000000006ACUUCUCCAAUGCUUAUACUCAAAGAGUAUGUGAUAGAGUUCCGAUAGAUGGAUUUUCUCAGAAUGAGAACAAGAAUAGUUACCUGUGCAACACUGGAGGAAGAAUGCAUCUGGUUUGUCCAAUGAGUAAGUCUCCAUAUGUGGAUCCUCAUAAAUCAGGACAUGAAAUCUGGGAAGAAUUUUCGAUGAGCUUCACUCCAGCAGUGAAAGAAGUGGUGGAAUUUGCAAAGCGUAUUCCUGGGUUCAGAGAUCUCUCUCAGCAUGACCAGGUCAACCUUUUAAAGGCUGGG2000000006ACUUUUGAGGUUUUAAUGGUACGGUUCGCAUCAUUAUUUGAUGCAAAGGAACGUACUGUCACCUUUUUAAGUGGAAAGAAAUAUAGUGUGGAUGAUUUACACUCAAUGGGAGCAGGGGAUCUGCUAAACUCUAUGUUUGAAUUUAGUGAGAAGCUAAAUGCCCUCCAACUUAGUGAUGAAGAGAUGAGUUUGUUUACAGCUGUUGUCCUGGUAUCUGCAGAUCGAUCUGGAAUAGAAAACGUCAACUCUGUGGAGGCUUUGCAGGAAACUCUCAUUCGUGCACUAAGG2000000006ACCUUAAUAAUGAAAAACCAUCCAAAUGAGGCCUCUAUUUUUACAAA2000000006ACUGCUUCUAAAGUUGCCAGAUCUUCGAUCU2000000009UUAAACAACAUGCACUCUGAGGAGCUCUUGGCCUUUAAAGUUCACCCUUAAGGCCUUUGUUUAUUUAAACAUGA2000000006ACUGAUGGUA2000000006ACUGUACAUUUUGUGCUAAAAUGCAUAUUUAUAUGUGUAUACCAUAUGUGGAGAUAGAAAAG2000000006ACCU2000000009UUAAGACAAUAAAAGAUUGUAGGCU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	768	1077	1140	1151	1441	1729	1776	1807	1881	1891	1953	1957
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	Y
Genomic Coordinates	3:23962110:+	3:23962419:+	3:23962482:+	3:23962493:+	3:23965154:+	3:23977291:+	3:23977338:+	3:23977369:+	3:23977443:+	3:23977453:+	3:23977515:+	3:23977519:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5FhTyQVy2tKW 5Nnepx5V7yHo 6UuHp6YApVKv aHkqKEJkRYyb jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 BkoLW2CBToyL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL aJksAshEgQ8U D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	msuJfBpJvM5H VyCX26p5UBRL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 XUkp6ghERQML Yfn77uLS5tv8	4HMi5ykupT9V 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 BkoLW2CBToyL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL aJksAshEgQ8U BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	msuJfBpJvM5H aJksAshEgQ8U BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8