General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000491060
Gene ID:	ENSG00000183763
Gene Name:	TRAIP
Sequence (UNICHARACTER ENCODING)	CCCUGCAGGAGUCCCAGCUCUCACUGGGUGGCCAGAGCUGUGCAGGAGAGCCAGAUGAGGAACUGGUUGGUGCCUUCCCUAUUUUUGUCCGGAAUGCCAPCCUAGGCCAGAAACAGCCCAAGAGGCCCAGGUCAGAGUCCUCUUGCAGCAAAGAUGUGGUAAGGACAGGCUUCGAUGGGCUCGGUGGCCGGACAAAAUUCAUCCAGCCUGUAUCCUUUUCCUGUGAUGUUGAGCUGAGCUGAACUGUGGAGCCCAUACUAUGCCUCACCUAUACCCCCAGCCUGCCAGUGCCAACAGCCUCAGGUGUGCAGUGCUGGGCCUCAUUCUGUGUAUCAGCGCCGCCCACCCCCGGCUCUGAGCCUUUCUUGCCCUGCAUUGCAGUCCUUUCUCGCCCUGCAUUGCAGUCCUUUCUCCAUGCCUCUUCCUUGACAGCUCCUCCAGACUGACACAGUCAUGAUCCGCCCAUUGCCUGUUAAGCCCAAGACCAAGGUUAAGCAGAGGGUGAGGGUGAAGACAGUGCCUUCUCUCUUCCAGGCCAAGCUGGACACCUUCCUGUGGUCGUGAGAACAGUGAGUCUGACCAAUGGCCAGACACAUGCCUGCAACUUGUAGGUCAAGGЖCUGUCCAGGCAGGGGUUUUGUGGЖCAGAGCCCCACUUUCGGGACCAGCCUGAGGUGUAAGGGCAGACAAЖCAGGUGAGGGUGAGUGUGGCACCCAGAGЖCUGCUCUUCCUGCCCUCACCCUGCCCCACUCCUACGACUGGGAGCUGACAUGACCAGCCCACUGAUCCUGUCAGCAGGUCCUGCUCCUGUUGCCAGGCUCCUGUUUAUAGCCAUGAUCAGAUGUGGUCAGЖCUCUUUCUGGGCCUGGAGЖCCACGGUCACUUGUUGACUGUCUCUGUGGACCAGAGUGCUUGAGGCAUCUCAGGCAGCCUCAGCCCAAGCUUCUACCUGCCUUUGACUUGCUUCUAGGCAUAGCCUGGGCCAAGCAGGGUGGGGAAUGGAGGAUAGCAUGGGAUGUAUGGAGAGGAUGGAAGAUUUUCAUGUAAAAUA
Sequence (SHORT NAMES ENCODING)	CCCUGCAGGAGUCCCAGCUCUCACUGGGUGGCCAGAGCUGUGCAGGAGAGCCAGAUGAGGAACUGGUUGGUGCCUUCCCUAUUUUUGUCCGGAAUGCCAYCCUAGGCCAGAAACAGCCCAAGAGGCCCAGGUCAGAGUCCUCUUGCAGCAAAGAUGUGGUAAGGACAGGCUUCGAUGGGCUCGGUGGCCGGACAAAAUUCAUCCAGCCUGUAUCCUUUUCCUGUGAUGUUGAGCUGAGCUGAACUGUGGAGCCCAUACUAUGCCUCACCUAUACCCCCAGCCUGCCAGUGCCAACAGCCUCAGGUGUGCAGUGCUGGGCCUCAUUCUGUGUAUCAGCGCCGCCCACCCCCGGCUCUGAGCCUUUCUUGCCCUGCAUUGCAGUCCUUUCUCGCCCUGCAUUGCAGUCCUUUCUCCAUGCCUCUUCCUUGACAGCUCCUCCAGACUGACACAGUCAUGAUCCGCCCAUUGCCUGUUAAGCCCAAGACCAAGGUUAAGCAGAGGGUGAGGGUGAAGACAGUGCCUUCUCUCUUCCAGGCCAAGCUGGACACCUUCCUGUGGUCGUGAGAACAGUGAGUCUGACCAAUGGCCAGACACAUGCCUGCAACUUGUAGGUCAAGGm6ACUGUCCAGGCAGGGGUUUUGUGGm6ACAGAGCCCCACUUUCGGGACCAGCCUGAGGUGUAAGGGCAGACAAm6ACAGGUGAGGGUGAGUGUGGCACCCAGAGm6ACUGCUCUUCCUGCCCUCACCCUGCCCCACUCCUACGACUGGGAGCUGACAUGACCAGCCCACUGAUCCUGUCAGCAGGUCCUGCUCCUGUUGCCAGGCUCCUGUUUAUAGCCAUGAUCAGAUGUGGUCAGm6ACUCUUUCUGGGCCUGGAGm6ACCACGGUCACUUGUUGACUGUCUCUGUGGACCAGAGUGCUUGAGGCAUCUCAGGCAGCCUCAGCCCAAGCUUCUACCUGCCUUUGACUUGCUUCUAGGCAUAGCCUGGGCCAAGCAGGGUGGGGAAUGGAGGAUAGCAUGGGAUGUAUGGAGAGGAUGGAAGAUUUUCAUGUAAAAUA
Sequence (MODOMICS CODE ENCODING)	CCCUGCAGGAGUCCCAGCUCUCACUGGGUGGCCAGAGCUGUGCAGGAGAGCCAGAUGAGGAACUGGUUGGUGCCUUCCCUAUUUUUGUCCGGAAUGCCA2000000009UCCUAGGCCAGAAACAGCCCAAGAGGCCCAGGUCAGAGUCCUCUUGCAGCAAAGAUGUGGUAAGGACAGGCUUCGAUGGGCUCGGUGGCCGGACAAAAUUCAUCCAGCCUGUAUCCUUUUCCUGUGAUGUUGAGCUGAGCUGAACUGUGGAGCCCAUACUAUGCCUCACCUAUACCCCCAGCCUGCCAGUGCCAACAGCCUCAGGUGUGCAGUGCUGGGCCUCAUUCUGUGUAUCAGCGCCGCCCACCCCCGGCUCUGAGCCUUUCUUGCCCUGCAUUGCAGUCCUUUCUCGCCCUGCAUUGCAGUCCUUUCUCCAUGCCUCUUCCUUGACAGCUCCUCCAGACUGACACAGUCAUGAUCCGCCCAUUGCCUGUUAAGCCCAAGACCAAGGUUAAGCAGAGGGUGAGGGUGAAGACAGUGCCUUCUCUCUUCCAGGCCAAGCUGGACACCUUCCUGUGGUCGUGAGAACAGUGAGUCUGACCAAUGGCCAGACACAUGCCUGCAACUUGUAGGUCAAGG2000000006ACUGUCCAGGCAGGGGUUUUGUGG2000000006ACAGAGCCCCACUUUCGGGACCAGCCUGAGGUGUAAGGGCAGACAA2000000006ACAGGUGAGGGUGAGUGUGGCACCCAGAG2000000006ACUGCUCUUCCUGCCCUCACCCUGCCCCACUCCUACGACUGGGAGCUGACAUGACCAGCCCACUGAUCCUGUCAGCAGGUCCUGCUCCUGUUGCCAGGCUCCUGUUUAUAGCCAUGAUCAGAUGUGGUCAG2000000006ACUCUUUCUGGGCCUGGAG2000000006ACCACGGUCACUUGUUGACUGUCUCUGUGGACCAGAGUGCUUGAGGCAUCUCAGGCAGCCUCAGCCCAAGCUUCUACCUGCCUUUGACUUGCUUCUAGGCAUAGCCUGGGCCAAGCAGGGUGGGGAAUGGAGGAUAGCAUGGGAUGUAUGGAGAGGAUGGAAGAUUUUCAUGUAAAAUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	100	619	643	689	718	849	868
Modification Positions	Y	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	3:49829675:-	3:49829048:-	3:49829024:-	3:49828978:-	3:49828949:-	3:49828818:-	3:49828799:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq iezFbUdmY3A6 Yfn77uLS5tv8	6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	msuJfBpJvM5H BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8