General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000620660
Gene ID:	ENSG00000163785
Gene Name:	RYK
Sequence (UNICHARACTER ENCODING)	CGGCUCGGGGCUGUGAGCGGCUCGGGGCCGGGGGUGGGCGGCGGUGCGGCGGGCGGCCGACGCUCCUCUUCGGCGGCGGCGGCGGCGGCCAUGCGUGGGGCGGCGCGGCUGGGGCGGCCGGGCCGGAGUUGCCUCCCGGGGGCCCGCGGCCUGAGGGCCCCGCCGCCGCCGCCGCUGCUGCUUCUGCUUGCGCUGUUGCCGCUGCUGCCCGCGCCUGGCGCUGCCGCCGCCCCCGCCCCGCGGCCCCCGGAGCUGCAGUCGGCUUCCGCGGGGCCCAGCGUGAGUCUCUACCUGAGCGAGGACGAGGUGCGCCGGCUGAUCGGUCUUGAUGCAGAACUPUAUUAUGUGAGAAAUGACCUUAUUAGUCACUACGCUCUAUCCUPUAGUCUGUUAGUACCCAGUGAGACAAAUUUCCUGCACUUCACCUGGCAUGCGAAGUCCAAGGUUGAAUAUAAGCUGGGAUUCCAAGUGGACAAUGUUUUGGCAAUGGAUAUGCCCCAGGUCAACAUUUCUGUUCAGGGGGAAGUUCCACGCACUPUAUCAGUGUUUCGGGUAGAGCUUUCCUGUACUGGCAAAGUAGAUUCUGAAGUUAUGAUACUAAUGCAGCUCAACUUGACAGUAAAUUCUUCAAAAAAUUUUACCGUCUUAAAUUUUAAACGAAGGAAAAUGUGCUACAAAAAACUUGAAGAAGUAAAAACUUCAGCCUUGGACAAAAACACUAGCAGAACUAUUUAUGAUCCUGUACAUGCAGCUCCAACCACUUCUACGCGUGUGUUUUAUAUUAGUGUAGGGGUUUGUUGUGCAGUAAUAUUUCUCGUAGCAAUAAUAUUAGCUGUUUUGCACCUUCAUAGUAUGAAAAGGAUUGAACUGGAUGACAGCAUUAGUGCCAGCAGUAGUUCCCAAGGGCUGUCUCAGCCAPCCACCCAGACGACUCAGUAUCUGAGAGCAGACACGCCCAACAAUGCAACUCCUAUCACCAGCUCCUUAGGUUAUCCUACCUUGCGGAUAGAGAAGAACGACUUGAGAAGUGUCACUCUUUUGGAGGCCAAAGGCAAGGUGAAGGAUAUAGCAAUAUCCAGAGAGAGGAUAACUCUAAAAGAUGUACUCCAAGAAGGUACUUUUGGGCGUAUUUUCCAUGGGAUUUUAAUAGAUGAAAAAGAUCCAAAUAAAGAAAAACAAGCAUUUGUCAAAACAGUUAAAGAUCAAGCUUCUGAAAUUCAGGUGACAAUGAUGCUCACUGAAAGUUGUAAGCUGCGAGGUCUUCAUCACAGAAAUCUUCUUCCUAUUACUCAUGUGUGUAUAGAAGAAGGAGAAAAGCCCAUGGUGAUAUUGCCUUACAUGAAUUGGGGGAAUCUUAAAUUGUUUUUACGACAGUGCAAGUUAGUAGAGGCCAAUAAUCCACAGGCAAUUUCUCAGCAAGACCUGGUACACAUGGCUAUUCAGAUUGCCUGUGGAAUGAGCUACCUGGCCAGAAGGGAAGUCAPCCACAAAGACCUGGCUGCCAGGAACUGUGUCAUUGAUGACACACUUCAAGUUAAGAUCACAGACAAUGCCCUCUCCAGAGACUUGUUCCCCAUGGACUAUCACUGUCUGGGGGACAAUGAAAACAGGCCAGUUCGUUGGAUGGCUCUUGAAAGUCUGGUUAAUAACGAGUUCUCUAGCGCUAGUGAUGUGPGGGCCUUUGGAGUGACGCUGUGGGAACUCAUGACUCUGGGCCAGACUCCCUACGUGGACAUUGACCCCUUCGAGAUGGCCGCAUACCUGAAAGAUGGUUACCGAAUAGCCCAGCCAAUCAACUGUCCUGAUGAAUUAUUUGCUGUGAUGGCCUGUUGCUGGGCCUUAGAUCCAGAGGAGAGGCCCAAGUUUCAGCAGCUGGUACAGUGCCUAЖCAGAGUUUCAUGCAGCCCUGGGGGCCUACGUCUGACUCCUCUCCAAUCCCACACCAUCAGGAAGAAGGUGCCUGUCGGGGCUCACUUGAAGCCUGUCAGGGAUGCUUUGUAUCUAACACAACGCCAACAGAAGCACAUUUGUCUUCCAGAACACCGUGCCUUAGAAAUGCUPUAGAAUCUGAЖCUUUUUAAGACAGACUUAAUAAUGUGGCAUAUUUUCUAGAUAUCACUUUUAUUAGGUUGAACUGAAAGGGUUUUUGUAAAUUUUUUGGCCAAAAUUUUUUAAAACAUACUUACUUUGGЖCUAGGGGUACAUUCUUACAAAAUAAAUAAACAGUUUUUAAAAUUGUUUAGACACAGAUAUUUGGAAUUAGCUAUCUUAGUGCCAACUGCUUUUUAUUUUUUUACUUCAUCAAGGUGAUGUAAGUGACUCACCUPUAAAGUUUUUUUAGUGUUAUUUUUUAUCABUACUCUGGGAAAUGGUUUGUCUUCAAGAUGCAAUACUUUUCUUAGUAAAGGAAAAACAGCAUAAAAAGAUACCUGGUCUGCCUUGUACAAGAAAAGGCAAUAUUAGAGGAAGAAAAUUUAAAGAAAAGCUAGAGGAAAAAAAAAUUUUUUUAAAAAUACUUAUUAGAAGCAAACUGCCCUUGCAUGGAAAACUGUUUAUUUUUUUCAGUGAAAAGGAAUUCUGCUUUCGUGUUUUUGGGAAAGCAGGAACUGAGUUCAUUACAUCUPUAAUUUGGCAGAAAUUAGCCUUUCUGUGAACCAGAUGUGGUUUGGGGCAGAUCUGUAGUAAЖCAAUGGUGAUUUUAUUUAUUUUUACUCUCUGGAAAAGGAGAUAAUACAAUUCCAGAAAGUGAACUCAUAUUUCUAAGGUUAAGAUUCCCUUUUAUUGCACCUAGAAUAGUGCUAUGCACAGAGCGGGUGCUUGAGUUGUUGUCGUUUUUUGUUUGUUUUUUAAAUGUAAACUGGUAAAUUUUGUGCUUAUCUUCAAGGCUGGCUUAAGUAUAAAAUUGUUUUUUAAЖCACUUGAAAAAUUAAAGGAUUUGUUUUAUAUU
Sequence (SHORT NAMES ENCODING)	CGGCUCGGGGCUGUGAGCGGCUCGGGGCCGGGGGUGGGCGGCGGUGCGGCGGGCGGCCGACGCUCCUCUUCGGCGGCGGCGGCGGCGGCCAUGCGUGGGGCGGCGCGGCUGGGGCGGCCGGGCCGGAGUUGCCUCCCGGGGGCCCGCGGCCUGAGGGCCCCGCCGCCGCCGCCGCUGCUGCUUCUGCUUGCGCUGUUGCCGCUGCUGCCCGCGCCUGGCGCUGCCGCCGCCCCCGCCCCGCGGCCCCCGGAGCUGCAGUCGGCUUCCGCGGGGCCCAGCGUGAGUCUCUACCUGAGCGAGGACGAGGUGCGCCGGCUGAUCGGUCUUGAUGCAGAACUYUAUUAUGUGAGAAAUGACCUUAUUAGUCACUACGCUCUAUCCUYUAGUCUGUUAGUACCCAGUGAGACAAAUUUCCUGCACUUCACCUGGCAUGCGAAGUCCAAGGUUGAAUAUAAGCUGGGAUUCCAAGUGGACAAUGUUUUGGCAAUGGAUAUGCCCCAGGUCAACAUUUCUGUUCAGGGGGAAGUUCCACGCACUYUAUCAGUGUUUCGGGUAGAGCUUUCCUGUACUGGCAAAGUAGAUUCUGAAGUUAUGAUACUAAUGCAGCUCAACUUGACAGUAAAUUCUUCAAAAAAUUUUACCGUCUUAAAUUUUAAACGAAGGAAAAUGUGCUACAAAAAACUUGAAGAAGUAAAAACUUCAGCCUUGGACAAAAACACUAGCAGAACUAUUUAUGAUCCUGUACAUGCAGCUCCAACCACUUCUACGCGUGUGUUUUAUAUUAGUGUAGGGGUUUGUUGUGCAGUAAUAUUUCUCGUAGCAAUAAUAUUAGCUGUUUUGCACCUUCAUAGUAUGAAAAGGAUUGAACUGGAUGACAGCAUUAGUGCCAGCAGUAGUUCCCAAGGGCUGUCUCAGCCAYCCACCCAGACGACUCAGUAUCUGAGAGCAGACACGCCCAACAAUGCAACUCCUAUCACCAGCUCCUUAGGUUAUCCUACCUUGCGGAUAGAGAAGAACGACUUGAGAAGUGUCACUCUUUUGGAGGCCAAAGGCAAGGUGAAGGAUAUAGCAAUAUCCAGAGAGAGGAUAACUCUAAAAGAUGUACUCCAAGAAGGUACUUUUGGGCGUAUUUUCCAUGGGAUUUUAAUAGAUGAAAAAGAUCCAAAUAAAGAAAAACAAGCAUUUGUCAAAACAGUUAAAGAUCAAGCUUCUGAAAUUCAGGUGACAAUGAUGCUCACUGAAAGUUGUAAGCUGCGAGGUCUUCAUCACAGAAAUCUUCUUCCUAUUACUCAUGUGUGUAUAGAAGAAGGAGAAAAGCCCAUGGUGAUAUUGCCUUACAUGAAUUGGGGGAAUCUUAAAUUGUUUUUACGACAGUGCAAGUUAGUAGAGGCCAAUAAUCCACAGGCAAUUUCUCAGCAAGACCUGGUACACAUGGCUAUUCAGAUUGCCUGUGGAAUGAGCUACCUGGCCAGAAGGGAAGUCAYCCACAAAGACCUGGCUGCCAGGAACUGUGUCAUUGAUGACACACUUCAAGUUAAGAUCACAGACAAUGCCCUCUCCAGAGACUUGUUCCCCAUGGACUAUCACUGUCUGGGGGACAAUGAAAACAGGCCAGUUCGUUGGAUGGCUCUUGAAAGUCUGGUUAAUAACGAGUUCUCUAGCGCUAGUGAUGUGYGGGCCUUUGGAGUGACGCUGUGGGAACUCAUGACUCUGGGCCAGACUCCCUACGUGGACAUUGACCCCUUCGAGAUGGCCGCAUACCUGAAAGAUGGUUACCGAAUAGCCCAGCCAAUCAACUGUCCUGAUGAAUUAUUUGCUGUGAUGGCCUGUUGCUGGGCCUUAGAUCCAGAGGAGAGGCCCAAGUUUCAGCAGCUGGUACAGUGCCUAm6ACAGAGUUUCAUGCAGCCCUGGGGGCCUACGUCUGACUCCUCUCCAAUCCCACACCAUCAGGAAGAAGGUGCCUGUCGGGGCUCACUUGAAGCCUGUCAGGGAUGCUUUGUAUCUAACACAACGCCAACAGAAGCACAUUUGUCUUCCAGAACACCGUGCCUUAGAAAUGCUYUAGAAUCUGAm6ACUUUUUAAGACAGACUUAAUAAUGUGGCAUAUUUUCUAGAUAUCACUUUUAUUAGGUUGAACUGAAAGGGUUUUUGUAAAUUUUUUGGCCAAAAUUUUUUAAAACAUACUUACUUUGGm6ACUAGGGGUACAUUCUUACAAAAUAAAUAAACAGUUUUUAAAAUUGUUUAGACACAGAUAUUUGGAAUUAGCUAUCUUAGUGCCAACUGCUUUUUAUUUUUUUACUUCAUCAAGGUGAUGUAAGUGACUCACCUYUAAAGUUUUUUUAGUGUUAUUUUUUAUCACmUACUCUGGGAAAUGGUUUGUCUUCAAGAUGCAAUACUUUUCUUAGUAAAGGAAAAACAGCAUAAAAAGAUACCUGGUCUGCCUUGUACAAGAAAAGGCAAUAUUAGAGGAAGAAAAUUUAAAGAAAAGCUAGAGGAAAAAAAAAUUUUUUUAAAAAUACUUAUUAGAAGCAAACUGCCCUUGCAUGGAAAACUGUUUAUUUUUUUCAGUGAAAAGGAAUUCUGCUUUCGUGUUUUUGGGAAAGCAGGAACUGAGUUCAUUACAUCUYUAAUUUGGCAGAAAUUAGCCUUUCUGUGAACCAGAUGUGGUUUGGGGCAGAUCUGUAGUAAm6ACAAUGGUGAUUUUAUUUAUUUUUACUCUCUGGAAAAGGAGAUAAUACAAUUCCAGAAAGUGAACUCAUAUUUCUAAGGUUAAGAUUCCCUUUUAUUGCACCUAGAAUAGUGCUAUGCACAGAGCGGGUGCUUGAGUUGUUGUCGUUUUUUGUUUGUUUUUUAAAUGUAAACUGGUAAAUUUUGUGCUUAUCUUCAAGGCUGGCUUAAGUAUAAAAUUGUUUUUUAAm6ACACUUGAAAAAUUAAAGGAUUUGUUUUAUAUU
Sequence (MODOMICS CODE ENCODING)	CGGCUCGGGGCUGUGAGCGGCUCGGGGCCGGGGGUGGGCGGCGGUGCGGCGGGCGGCCGACGCUCCUCUUCGGCGGCGGCGGCGGCGGCCAUGCGUGGGGCGGCGCGGCUGGGGCGGCCGGGCCGGAGUUGCCUCCCGGGGGCCCGCGGCCUGAGGGCCCCGCCGCCGCCGCCGCUGCUGCUUCUGCUUGCGCUGUUGCCGCUGCUGCCCGCGCCUGGCGCUGCCGCCGCCCCCGCCCCGCGGCCCCCGGAGCUGCAGUCGGCUUCCGCGGGGCCCAGCGUGAGUCUCUACCUGAGCGAGGACGAGGUGCGCCGGCUGAUCGGUCUUGAUGCAGAACU2000000009UUAUUAUGUGAGAAAUGACCUUAUUAGUCACUACGCUCUAUCCU2000000009UUAGUCUGUUAGUACCCAGUGAGACAAAUUUCCUGCACUUCACCUGGCAUGCGAAGUCCAAGGUUGAAUAUAAGCUGGGAUUCCAAGUGGACAAUGUUUUGGCAAUGGAUAUGCCCCAGGUCAACAUUUCUGUUCAGGGGGAAGUUCCACGCACU2000000009UUAUCAGUGUUUCGGGUAGAGCUUUCCUGUACUGGCAAAGUAGAUUCUGAAGUUAUGAUACUAAUGCAGCUCAACUUGACAGUAAAUUCUUCAAAAAAUUUUACCGUCUUAAAUUUUAAACGAAGGAAAAUGUGCUACAAAAAACUUGAAGAAGUAAAAACUUCAGCCUUGGACAAAAACACUAGCAGAACUAUUUAUGAUCCUGUACAUGCAGCUCCAACCACUUCUACGCGUGUGUUUUAUAUUAGUGUAGGGGUUUGUUGUGCAGUAAUAUUUCUCGUAGCAAUAAUAUUAGCUGUUUUGCACCUUCAUAGUAUGAAAAGGAUUGAACUGGAUGACAGCAUUAGUGCCAGCAGUAGUUCCCAAGGGCUGUCUCAGCCA2000000009UCCACCCAGACGACUCAGUAUCUGAGAGCAGACACGCCCAACAAUGCAACUCCUAUCACCAGCUCCUUAGGUUAUCCUACCUUGCGGAUAGAGAAGAACGACUUGAGAAGUGUCACUCUUUUGGAGGCCAAAGGCAAGGUGAAGGAUAUAGCAAUAUCCAGAGAGAGGAUAACUCUAAAAGAUGUACUCCAAGAAGGUACUUUUGGGCGUAUUUUCCAUGGGAUUUUAAUAGAUGAAAAAGAUCCAAAUAAAGAAAAACAAGCAUUUGUCAAAACAGUUAAAGAUCAAGCUUCUGAAAUUCAGGUGACAAUGAUGCUCACUGAAAGUUGUAAGCUGCGAGGUCUUCAUCACAGAAAUCUUCUUCCUAUUACUCAUGUGUGUAUAGAAGAAGGAGAAAAGCCCAUGGUGAUAUUGCCUUACAUGAAUUGGGGGAAUCUUAAAUUGUUUUUACGACAGUGCAAGUUAGUAGAGGCCAAUAAUCCACAGGCAAUUUCUCAGCAAGACCUGGUACACAUGGCUAUUCAGAUUGCCUGUGGAAUGAGCUACCUGGCCAGAAGGGAAGUCA2000000009UCCACAAAGACCUGGCUGCCAGGAACUGUGUCAUUGAUGACACACUUCAAGUUAAGAUCACAGACAAUGCCCUCUCCAGAGACUUGUUCCCCAUGGACUAUCACUGUCUGGGGGACAAUGAAAACAGGCCAGUUCGUUGGAUGGCUCUUGAAAGUCUGGUUAAUAACGAGUUCUCUAGCGCUAGUGAUGUG2000000009UGGGCCUUUGGAGUGACGCUGUGGGAACUCAUGACUCUGGGCCAGACUCCCUACGUGGACAUUGACCCCUUCGAGAUGGCCGCAUACCUGAAAGAUGGUUACCGAAUAGCCCAGCCAAUCAACUGUCCUGAUGAAUUAUUUGCUGUGAUGGCCUGUUGCUGGGCCUUAGAUCCAGAGGAGAGGCCCAAGUUUCAGCAGCUGGUACAGUGCCUA2000000006ACAGAGUUUCAUGCAGCCCUGGGGGCCUACGUCUGACUCCUCUCCAAUCCCACACCAUCAGGAAGAAGGUGCCUGUCGGGGCUCACUUGAAGCCUGUCAGGGAUGCUUUGUAUCUAACACAACGCCAACAGAAGCACAUUUGUCUUCCAGAACACCGUGCCUUAGAAAUGCU2000000009UUAGAAUCUGA2000000006ACUUUUUAAGACAGACUUAAUAAUGUGGCAUAUUUUCUAGAUAUCACUUUUAUUAGGUUGAACUGAAAGGGUUUUUGUAAAUUUUUUGGCCAAAAUUUUUUAAAACAUACUUACUUUGG2000000006ACUAGGGGUACAUUCUUACAAAAUAAAUAAACAGUUUUUAAAAUUGUUUAGACACAGAUAUUUGGAAUUAGCUAUCUUAGUGCCAACUGCUUUUUAUUUUUUUACUUCAUCAAGGUGAUGUAAGUGACUCACCU2000000009UUAAAGUUUUUUUAGUGUUAUUUUUUAUCA2000000090CUACUCUGGGAAAUGGUUUGUCUUCAAGAUGCAAUACUUUUCUUAGUAAAGGAAAAACAGCAUAAAAAGAUACCUGGUCUGCCUUGUACAAGAAAAGGCAAUAUUAGAGGAAGAAAAUUUAAAGAAAAGCUAGAGGAAAAAAAAAUUUUUUUAAAAAUACUUAUUAGAAGCAAACUGCCCUUGCAUGGAAAACUGUUUAUUUUUUUCAGUGAAAAGGAAUUCUGCUUUCGUGUUUUUGGGAAAGCAGGAACUGAGUUCAUUACAUCU2000000009UUAAUUUGGCAGAAAUUAGCCUUUCUGUGAACCAGAUGUGGUUUGGGGCAGAUCUGUAGUAA2000000006ACAAUGGUGAUUUUAUUUAUUUUUACUCUCUGGAAAAGGAGAUAAUACAAUUCCAGAAAGUGAACUCAUAUUUCUAAGGUUAAGAUUCCCUUUUAUUGCACCUAGAAUAGUGCUAUGCACAGAGCGGGUGCUUGAGUUGUUGUCGUUUUUUGUUUGUUUUUUAAAUGUAAACUGGUAAAUUUUGUGCUUAUCUUCAAGGCUGGCUUAAGUAUAAAAUUGUUUUUUAA2000000006ACACUUGAAAAAUUAAAGGAUUUGUUUUAUAUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	339	383	538	919	1484	1675	1888	2060	2071	2190	2324	2354	2621	2683	2910
Modification Positions	Y	Y	Y	Y	Y	Y	m6A	Y	m6A	m6A	Y	Cm	Y	m6A	m6A
Genomic Coordinates	3:134222523:-	3:134222479:-	3:134211514:-	3:134195142:-	3:134175960:-	3:134159373:-	3:134158188:-	3:134158016:-	3:134158005:-	3:134157886:-	3:134157752:-	3:134157722:-	3:134157455:-	3:134157393:-	3:134157166:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	KTLz8piFYdwC KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8