Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000449617
Gene ID: ENSG00000093183
Gene Name: SEC22C
Sequence (UNICHARACTER ENCODING) CUACCUGCGCCUGGGCUGCCGGUGACCUGGGCCGAGCCCUCCCGGUCGGCUAAGAUUGCUGAGGAGGCGGCGGGUAGCUGGCAGGCGCCGACUUCCGAAGGCCGCCGUCCGGGCGAGGUGUCCUCAUGACUUCUCUUGUGGACCAUGUCCGUGAUCUUUUUUGCCUGCGUGGUACGGGUAAGGGAUGGЖCUGCCCCUCUCAGCCUCUACUGAUUUUUACCACACCCAAGAUUUUUUGGAAUGGAGGAGACGGCUCAAGAGUUUAGCCUUGCGACUGGCCCAGUAUCCAGGUCGAGGUUCUGCAGAAGGUUGUGACUPUAGUAUACAACAUUUUAAAGGAAGCGGAAGAAAGACAGUCUCAGGAAUAGGUCGAACUGAAGAGACAAUAUACCUGCAGCAAACAGCUACAGGACUGUUUAAAGCCAAGCAAGUGCAGAAUUCAGUUUUUCUUCUUUCGGGGACGUGGCCUGCAUGGCUAUCUGCUCCUGCCAGUGUCCAGCAGCCAUGGCCUUCUGCUUCCUGGAGЖCCCUGUGGUGGGAAUUCACAGCUUCCUAUGACACUACCUGCAUUGGCCUAGCCUCCAGGCCAUACGCUUUUCUUGAGUUUGACAGCAUCAUUCAGAAAGUGAAGUGGCAUUUUAACUAUGUAAGUUCCUCUCAGAUGGAGUGCAGCUUGGAAAAAAUUCAGGAGGAGCUCAAGUUGCAGCCUCCAGCGGUUCUCACUCUGGAGGACACAGAUGUGGCAAAUGGGGUGAUGAAUGGUCACACACCGAUGCACUUGGAGCCUGCUCCUAAUUUCCGAAUGGAACCAGUGACAGCCCUGGGUAUCCUCUCCCUCAUUCUCAACAUCAUGUGUGCUGCCCUGAAUCUCAUUCGAGGAGUUCACCUUGCAGAACAUUCUPUACAGGUUGCCCAUGAGGAAAUUGGAAACAUUCUGGCUUUUCUUGUUCCUUUCGUAGCCUGCAUUUUCCAGGAUCCAAGGAGCUGGUUCUGCUGGUUGGACCAAACCUCGUGAGCCAGCCACCCCUGACCCAAAUGAGGAGAGCUCUGAUUCUCCCAPCCGGGAGCAGUGAUGUCAAЖCUUCUGCUGCUGGGGAAAUCUCAUCAGCAGGGAGCCUGUGGAAAAGGGCAUGUCAGUGAAAUCUGGGAAUGGCUGGAUUCGGAAACAUCUGCCCAUGUGUAUUGAUGGCAGAGCUGUUGCCCACAAGCGCCUUUUAUUUAGGGUAAAAUUAACAAAUCCAUUCUAUUCCUCUGACCCAUGCUUAGUACAUAUGACCUPUAACCCUUACAUUUAUAUGAUUCUGGGGUUGCUUCAGAAGUGUUAUUUCAUGAAUCAUUCAUAUGAUUUGAUCCCCCAGGAUUCUAUUUUGUUUAAUGGGCUUUUCUACUAAAAGCAUAAAAUACUGAGGCUGAUUUAGUCAGGGCAAAACCAUUUACUPUACAUAUUCG
Sequence (SHORT NAMES ENCODING) CUACCUGCGCCUGGGCUGCCGGUGACCUGGGCCGAGCCCUCCCGGUCGGCUAAGAUUGCUGAGGAGGCGGCGGGUAGCUGGCAGGCGCCGACUUCCGAAGGCCGCCGUCCGGGCGAGGUGUCCUCAUGACUUCUCUUGUGGACCAUGUCCGUGAUCUUUUUUGCCUGCGUGGUACGGGUAAGGGAUGGm6ACUGCCCCUCUCAGCCUCUACUGAUUUUUACCACACCCAAGAUUUUUUGGAAUGGAGGAGACGGCUCAAGAGUUUAGCCUUGCGACUGGCCCAGUAUCCAGGUCGAGGUUCUGCAGAAGGUUGUGACUYUAGUAUACAACAUUUUAAAGGAAGCGGAAGAAAGACAGUCUCAGGAAUAGGUCGAACUGAAGAGACAAUAUACCUGCAGCAAACAGCUACAGGACUGUUUAAAGCCAAGCAAGUGCAGAAUUCAGUUUUUCUUCUUUCGGGGACGUGGCCUGCAUGGCUAUCUGCUCCUGCCAGUGUCCAGCAGCCAUGGCCUUCUGCUUCCUGGAGm6ACCCUGUGGUGGGAAUUCACAGCUUCCUAUGACACUACCUGCAUUGGCCUAGCCUCCAGGCCAUACGCUUUUCUUGAGUUUGACAGCAUCAUUCAGAAAGUGAAGUGGCAUUUUAACUAUGUAAGUUCCUCUCAGAUGGAGUGCAGCUUGGAAAAAAUUCAGGAGGAGCUCAAGUUGCAGCCUCCAGCGGUUCUCACUCUGGAGGACACAGAUGUGGCAAAUGGGGUGAUGAAUGGUCACACACCGAUGCACUUGGAGCCUGCUCCUAAUUUCCGAAUGGAACCAGUGACAGCCCUGGGUAUCCUCUCCCUCAUUCUCAACAUCAUGUGUGCUGCCCUGAAUCUCAUUCGAGGAGUUCACCUUGCAGAACAUUCUYUACAGGUUGCCCAUGAGGAAAUUGGAAACAUUCUGGCUUUUCUUGUUCCUUUCGUAGCCUGCAUUUUCCAGGAUCCAAGGAGCUGGUUCUGCUGGUUGGACCAAACCUCGUGAGCCAGCCACCCCUGACCCAAAUGAGGAGAGCUCUGAUUCUCCCAYCCGGGAGCAGUGAUGUCAAm6ACUUCUGCUGCUGGGGAAAUCUCAUCAGCAGGGAGCCUGUGGAAAAGGGCAUGUCAGUGAAAUCUGGGAAUGGCUGGAUUCGGAAACAUCUGCCCAUGUGUAUUGAUGGCAGAGCUGUUGCCCACAAGCGCCUUUUAUUUAGGGUAAAAUUAACAAAUCCAUUCUAUUCCUCUGACCCAUGCUUAGUACAUAUGACCUYUAACCCUUACAUUUAUAUGAUUCUGGGGUUGCUUCAGAAGUGUUAUUUCAUGAAUCAUUCAUAUGAUUUGAUCCCCCAGGAUUCUAUUUUGUUUAAUGGGCUUUUCUACUAAAAGCAUAAAAUACUGAGGCUGAUUUAGUCAGGGCAAAACCAUUUACUYUACAUAUUCG
Sequence (MODOMICS CODE ENCODING) CUACCUGCGCCUGGGCUGCCGGUGACCUGGGCCGAGCCCUCCCGGUCGGCUAAGAUUGCUGAGGAGGCGGCGGGUAGCUGGCAGGCGCCGACUUCCGAAGGCCGCCGUCCGGGCGAGGUGUCCUCAUGACUUCUCUUGUGGACCAUGUCCGUGAUCUUUUUUGCCUGCGUGGUACGGGUAAGGGAUGG2000000006ACUGCCCCUCUCAGCCUCUACUGAUUUUUACCACACCCAAGAUUUUUUGGAAUGGAGGAGACGGCUCAAGAGUUUAGCCUUGCGACUGGCCCAGUAUCCAGGUCGAGGUUCUGCAGAAGGUUGUGACU2000000009UUAGUAUACAACAUUUUAAAGGAAGCGGAAGAAAGACAGUCUCAGGAAUAGGUCGAACUGAAGAGACAAUAUACCUGCAGCAAACAGCUACAGGACUGUUUAAAGCCAAGCAAGUGCAGAAUUCAGUUUUUCUUCUUUCGGGGACGUGGCCUGCAUGGCUAUCUGCUCCUGCCAGUGUCCAGCAGCCAUGGCCUUCUGCUUCCUGGAG2000000006ACCCUGUGGUGGGAAUUCACAGCUUCCUAUGACACUACCUGCAUUGGCCUAGCCUCCAGGCCAUACGCUUUUCUUGAGUUUGACAGCAUCAUUCAGAAAGUGAAGUGGCAUUUUAACUAUGUAAGUUCCUCUCAGAUGGAGUGCAGCUUGGAAAAAAUUCAGGAGGAGCUCAAGUUGCAGCCUCCAGCGGUUCUCACUCUGGAGGACACAGAUGUGGCAAAUGGGGUGAUGAAUGGUCACACACCGAUGCACUUGGAGCCUGCUCCUAAUUUCCGAAUGGAACCAGUGACAGCCCUGGGUAUCCUCUCCCUCAUUCUCAACAUCAUGUGUGCUGCCCUGAAUCUCAUUCGAGGAGUUCACCUUGCAGAACAUUCU2000000009UUACAGGUUGCCCAUGAGGAAAUUGGAAACAUUCUGGCUUUUCUUGUUCCUUUCGUAGCCUGCAUUUUCCAGGAUCCAAGGAGCUGGUUCUGCUGGUUGGACCAAACCUCGUGAGCCAGCCACCCCUGACCCAAAUGAGGAGAGCUCUGAUUCUCCCA2000000009UCCGGGAGCAGUGAUGUCAA2000000006ACUUCUGCUGCUGGGGAAAUCUCAUCAGCAGGGAGCCUGUGGAAAAGGGCAUGUCAGUGAAAUCUGGGAAUGGCUGGAUUCGGAAACAUCUGCCCAUGUGUAUUGAUGGCAGAGCUGUUGCCCACAAGCGCCUUUUAUUUAGGGUAAAAUUAACAAAUCCAUUCUAUUCCUCUGACCCAUGCUUAGUACAUAUGACCU2000000009UUAACCCUUACAUUUAUAUGAUUCUGGGGUUGCUUCAGAAGUGUUAUUUCAUGAAUCAUUCAUAUGAUUUGAUCCCCCAGGAUUCUAUUUUGUUUAAUGGGCUUUUCUACUAAAAGCAUAAAAUACUGAGGCUGAUUUAGUCAGGGCAAAACCAUUUACU2000000009UUACAUAUUCG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 189 317 525 900 1058 1078 1276 1436
Modification Positions m6A Y m6A Y Y m6A Y Y
Genomic Coordinates 3:42569002:- 3:42568874:- 3:42563604:- 3:42557583:- 3:42548571:- 3:42548551:- 3:42548353:- 3:42548193:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
Lny8GcCeVGc9
LZJKems7W2wi
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
8cMbzB4aD5Se
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
JkWoGWVwjNda
Yfn77uLS5tv8