Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000543411
Gene ID: ENSG00000114812
Gene Name: VIPR1
Sequence (UNICHARACTER ENCODING) CUCUUAGCUCUGGGGCCACAGCGCCAGCGCCACUCUGCCAGGCUCCCGGCCAUCGCCCGCCUGGUGCGCCGCCCGCCAGCUCUUUGCCCGCGCGGGGCCGCCCGCCGCGGGCUCAGGGCAGACCAUGCGCCCGCCAAGUCCGCUGCCCGCCCGCUGGCUAUGCGUGCUGGCAGGCGCCCUCGCCUGGGCCCUUGGGCCGGCGGCUGCAGCAAGAUGUGGGACAACCUCACCUGCUGGCCAGCCACCCCUCGGGGCCAGGUAGUUGUCUUGGCCUGUCCCCUCAUCUUCAAGCUCUUCUCCUCCAUUCAAGGCCGCAAUGUAAGCCGCAGCUGCACCGACGAAGGCUGGACGCACCUGGAGCCUGGCCCGUACCCCAUUGCCUGUGGUUUGGAUGACAAGGCAGCGAGUUUGGAUGAGCAGACCAUGUUCUACGGUUCUGUGAAGACCGGCUACACCAUUGGCUACGGCCUGUCCCUCGCCACCCUUCUGGUCGCCACAGCUAUCCUGAGCCUGUUCAGGAAGCUCCACUGCACGCGGAACUACAUCCACAUGCACCUCUUCAUAUCCUUCAUCCUGAGGGCUGCCGCUGUCUUCAUCAAAGACUUGGCCCUCUUCGACAGCGGGGAGUCGGACCAGUGCUCCGAGGGCUCGGUGGGCUGUAAGGCAGCCAUGGUCUUUUUCCAAUAUUGUGUCAUGGCUAACUUCUUCUGGCUGCUGGUGGAGGGCCUCUACCUGUACACCCUGCUUGCCGUCUCCUUCUUCUCUGAGCGGAAGUACUUCUGGGGGUACAUACUCAUCGGCUGGGGGGUACCCAGCACAUUCACCAUGGUGUGGACCAUCGCCAGGAUCCAUUUUGAGGAUUAUGGGUGCUGGGACACCAUCAACUCCUCACUGUGGUGGAUCAUAAAGGGCCCCAUCCUCACCUCCAUCUUGGUAAACUUCAUCCUGUUUAUUUGCAUCAUCCGAAUCCUGCUUCAGAAACUGCGGCCCCCAGAUAUCAGGAAGAGUGACAGCAGUCCAUACUCAAGGCUAGCCAGGUCCACACUCCUGCUGAUCCCCCUGUUUGGAGUACACUACAUCAUGUUCGCCUUCUUUCCGGACAAUUUUAAGCCUGAAGUGAAGAUGGUCUUUGAGCUCGUCGUGGGGUCUUUCCAGGGUUUUGUGGUGGCUAUCCUCUACUGCUUCCUCAAUGGUGAGGUGCAGGCGGAGCUGAGGCGGAAGUGGCGGCGCUGGCACCUGCAGGGCGUCCUGGGCUGGAACCCCAAAUACCGGCACCCGUCGGGAGGCAGCAACGGCGCCACGUGCAGCACGCAGGUUUCCAUGCUGACCCGCGUCAGCCCAGGUGCCCGCCGCUCCUCCAGCUUCCAAGCCGAAGUCUCCCUGGUCUGACCACCAGGAUCCCAGGGGCCCAAGGCGGCCCCUCCCGCCCCUUCCCACUCACCCCGGCAGACGCCGGGGACAGAGGCCUGCCCGGGCGCGGCCAGCCCCGGCCCUGGGCUCGGAGGCUGCCCCCGGCCCCCUGGUCUCUGGUCCGGЖCACUCCUAGAGAACGCAGCCCUAGAGCCUGCCUGGAGCGUUUCUAGCAAGUGAGAGAGAUGGGAGCUCCUCUCCUGGAGGAUUGCAGGUGGAЖCUCAGUCAUUAGACUCCUCCUCCAAAGGCCCCCUACGCCAAUCAAGGGCAAAAAGUCUACAUACUUUCAUCCUGACUCUGCCCCCUGCUGGCUCUUCUGCCCAAUUGGAGGAAAGCAACCGGUGGAUCCUCAAACAACACUGGUGUGACCUGAGGGCAGAAAGGUUCUGCCCGGGAAGGUCACCAGCACCAACACCACGGUAGUGCCUGAAAUUUCACCAUUGCUGUCAAGUUCCUUUGGGUUAAGCAUUACCACUCAGGCAUUUGЖCUGAAGAUGCAGCUCACUACCCUAUUCUCUCUUUACGCUUAGUUAUCAGCUUUUUAAAGUGGGUUAUUCUGGAGUUUUUGUUUGGAGAGCACACCUAUCUUAGUGGUUCCCCACCGAAGUGGACUGGCCCCUGGGUCAGUCUGGUGGGAGGACGGUGCAACCCAAGGЖCUGAGGGЖCUCUGAAGCCUCUGGGAAAUGAGAAGGCAGCCACCAGCGAAUGCUAGGUCUCGGЖCUAAGCCUACCUGCUCUCCAAGUCUCAGUGGCUUCAUCUGUCAAGUGGGAUCUGUCACACCAGCCAUACUUAUCUCUCUGUGCUGUGGAAGCAACAGGAAUCAAGAGCUGCCCUCCUUGUCCACCCACCUAUGUGCCAACUGUUGUAACUAGGCUCAGAGAUGUGCACCCAUGGGCUCUGACAGAAAGCAGAUACCUCACCCUGCUACACAUACAGGAUUUGAЖCUCAGAUCUGUCUGAUAGGAAUGUGAAAGCACGGЖCUCUUACUGCUAACUUUUGUGUAUCGUAACCAGCCAGAUCCUCUUGGUUAUUUGUUUACCACUUGUAUUAUUAAUGCCAUUAUCCCUGAAUCCCCCUUGCCACCCCACCCUCCCUGGAGUGUGGCUGAGGAGGCCUCCAUCUCAUGUAUCAUCUGGAUAGGAGCCUGCUGGUCACAGCCUCCUCUGUCUGCCCUUCACCCCAGUGGCCACUCAGCUUCCUACCCACACCUCUGCCAGAAGAUCCCCUCAGGЖCUGCAACAGGCUUGUGCAACAAUAAAUGUUGGCUUGGAUUGGC
Sequence (SHORT NAMES ENCODING) CUCUUAGCUCUGGGGCCACAGCGCCAGCGCCACUCUGCCAGGCUCCCGGCCAUCGCCCGCCUGGUGCGCCGCCCGCCAGCUCUUUGCCCGCGCGGGGCCGCCCGCCGCGGGCUCAGGGCAGACCAUGCGCCCGCCAAGUCCGCUGCCCGCCCGCUGGCUAUGCGUGCUGGCAGGCGCCCUCGCCUGGGCCCUUGGGCCGGCGGCUGCAGCAAGAUGUGGGACAACCUCACCUGCUGGCCAGCCACCCCUCGGGGCCAGGUAGUUGUCUUGGCCUGUCCCCUCAUCUUCAAGCUCUUCUCCUCCAUUCAAGGCCGCAAUGUAAGCCGCAGCUGCACCGACGAAGGCUGGACGCACCUGGAGCCUGGCCCGUACCCCAUUGCCUGUGGUUUGGAUGACAAGGCAGCGAGUUUGGAUGAGCAGACCAUGUUCUACGGUUCUGUGAAGACCGGCUACACCAUUGGCUACGGCCUGUCCCUCGCCACCCUUCUGGUCGCCACAGCUAUCCUGAGCCUGUUCAGGAAGCUCCACUGCACGCGGAACUACAUCCACAUGCACCUCUUCAUAUCCUUCAUCCUGAGGGCUGCCGCUGUCUUCAUCAAAGACUUGGCCCUCUUCGACAGCGGGGAGUCGGACCAGUGCUCCGAGGGCUCGGUGGGCUGUAAGGCAGCCAUGGUCUUUUUCCAAUAUUGUGUCAUGGCUAACUUCUUCUGGCUGCUGGUGGAGGGCCUCUACCUGUACACCCUGCUUGCCGUCUCCUUCUUCUCUGAGCGGAAGUACUUCUGGGGGUACAUACUCAUCGGCUGGGGGGUACCCAGCACAUUCACCAUGGUGUGGACCAUCGCCAGGAUCCAUUUUGAGGAUUAUGGGUGCUGGGACACCAUCAACUCCUCACUGUGGUGGAUCAUAAAGGGCCCCAUCCUCACCUCCAUCUUGGUAAACUUCAUCCUGUUUAUUUGCAUCAUCCGAAUCCUGCUUCAGAAACUGCGGCCCCCAGAUAUCAGGAAGAGUGACAGCAGUCCAUACUCAAGGCUAGCCAGGUCCACACUCCUGCUGAUCCCCCUGUUUGGAGUACACUACAUCAUGUUCGCCUUCUUUCCGGACAAUUUUAAGCCUGAAGUGAAGAUGGUCUUUGAGCUCGUCGUGGGGUCUUUCCAGGGUUUUGUGGUGGCUAUCCUCUACUGCUUCCUCAAUGGUGAGGUGCAGGCGGAGCUGAGGCGGAAGUGGCGGCGCUGGCACCUGCAGGGCGUCCUGGGCUGGAACCCCAAAUACCGGCACCCGUCGGGAGGCAGCAACGGCGCCACGUGCAGCACGCAGGUUUCCAUGCUGACCCGCGUCAGCCCAGGUGCCCGCCGCUCCUCCAGCUUCCAAGCCGAAGUCUCCCUGGUCUGACCACCAGGAUCCCAGGGGCCCAAGGCGGCCCCUCCCGCCCCUUCCCACUCACCCCGGCAGACGCCGGGGACAGAGGCCUGCCCGGGCGCGGCCAGCCCCGGCCCUGGGCUCGGAGGCUGCCCCCGGCCCCCUGGUCUCUGGUCCGGm6ACACUCCUAGAGAACGCAGCCCUAGAGCCUGCCUGGAGCGUUUCUAGCAAGUGAGAGAGAUGGGAGCUCCUCUCCUGGAGGAUUGCAGGUGGAm6ACUCAGUCAUUAGACUCCUCCUCCAAAGGCCCCCUACGCCAAUCAAGGGCAAAAAGUCUACAUACUUUCAUCCUGACUCUGCCCCCUGCUGGCUCUUCUGCCCAAUUGGAGGAAAGCAACCGGUGGAUCCUCAAACAACACUGGUGUGACCUGAGGGCAGAAAGGUUCUGCCCGGGAAGGUCACCAGCACCAACACCACGGUAGUGCCUGAAAUUUCACCAUUGCUGUCAAGUUCCUUUGGGUUAAGCAUUACCACUCAGGCAUUUGm6ACUGAAGAUGCAGCUCACUACCCUAUUCUCUCUUUACGCUUAGUUAUCAGCUUUUUAAAGUGGGUUAUUCUGGAGUUUUUGUUUGGAGAGCACACCUAUCUUAGUGGUUCCCCACCGAAGUGGACUGGCCCCUGGGUCAGUCUGGUGGGAGGACGGUGCAACCCAAGGm6ACUGAGGGm6ACUCUGAAGCCUCUGGGAAAUGAGAAGGCAGCCACCAGCGAAUGCUAGGUCUCGGm6ACUAAGCCUACCUGCUCUCCAAGUCUCAGUGGCUUCAUCUGUCAAGUGGGAUCUGUCACACCAGCCAUACUUAUCUCUCUGUGCUGUGGAAGCAACAGGAAUCAAGAGCUGCCCUCCUUGUCCACCCACCUAUGUGCCAACUGUUGUAACUAGGCUCAGAGAUGUGCACCCAUGGGCUCUGACAGAAAGCAGAUACCUCACCCUGCUACACAUACAGGAUUUGAm6ACUCAGAUCUGUCUGAUAGGAAUGUGAAAGCACGGm6ACUCUUACUGCUAACUUUUGUGUAUCGUAACCAGCCAGAUCCUCUUGGUUAUUUGUUUACCACUUGUAUUAUUAAUGCCAUUAUCCCUGAAUCCCCCUUGCCACCCCACCCUCCCUGGAGUGUGGCUGAGGAGGCCUCCAUCUCAUGUAUCAUCUGGAUAGGAGCCUGCUGGUCACAGCCUCCUCUGUCUGCCCUUCACCCCAGUGGCCACUCAGCUUCCUACCCACACCUCUGCCAGAAGAUCCCCUCAGGm6ACUGCAACAGGCUUGUGCAACAAUAAAUGUUGGCUUGGAUUGGC
Sequence (MODOMICS CODE ENCODING) CUCUUAGCUCUGGGGCCACAGCGCCAGCGCCACUCUGCCAGGCUCCCGGCCAUCGCCCGCCUGGUGCGCCGCCCGCCAGCUCUUUGCCCGCGCGGGGCCGCCCGCCGCGGGCUCAGGGCAGACCAUGCGCCCGCCAAGUCCGCUGCCCGCCCGCUGGCUAUGCGUGCUGGCAGGCGCCCUCGCCUGGGCCCUUGGGCCGGCGGCUGCAGCAAGAUGUGGGACAACCUCACCUGCUGGCCAGCCACCCCUCGGGGCCAGGUAGUUGUCUUGGCCUGUCCCCUCAUCUUCAAGCUCUUCUCCUCCAUUCAAGGCCGCAAUGUAAGCCGCAGCUGCACCGACGAAGGCUGGACGCACCUGGAGCCUGGCCCGUACCCCAUUGCCUGUGGUUUGGAUGACAAGGCAGCGAGUUUGGAUGAGCAGACCAUGUUCUACGGUUCUGUGAAGACCGGCUACACCAUUGGCUACGGCCUGUCCCUCGCCACCCUUCUGGUCGCCACAGCUAUCCUGAGCCUGUUCAGGAAGCUCCACUGCACGCGGAACUACAUCCACAUGCACCUCUUCAUAUCCUUCAUCCUGAGGGCUGCCGCUGUCUUCAUCAAAGACUUGGCCCUCUUCGACAGCGGGGAGUCGGACCAGUGCUCCGAGGGCUCGGUGGGCUGUAAGGCAGCCAUGGUCUUUUUCCAAUAUUGUGUCAUGGCUAACUUCUUCUGGCUGCUGGUGGAGGGCCUCUACCUGUACACCCUGCUUGCCGUCUCCUUCUUCUCUGAGCGGAAGUACUUCUGGGGGUACAUACUCAUCGGCUGGGGGGUACCCAGCACAUUCACCAUGGUGUGGACCAUCGCCAGGAUCCAUUUUGAGGAUUAUGGGUGCUGGGACACCAUCAACUCCUCACUGUGGUGGAUCAUAAAGGGCCCCAUCCUCACCUCCAUCUUGGUAAACUUCAUCCUGUUUAUUUGCAUCAUCCGAAUCCUGCUUCAGAAACUGCGGCCCCCAGAUAUCAGGAAGAGUGACAGCAGUCCAUACUCAAGGCUAGCCAGGUCCACACUCCUGCUGAUCCCCCUGUUUGGAGUACACUACAUCAUGUUCGCCUUCUUUCCGGACAAUUUUAAGCCUGAAGUGAAGAUGGUCUUUGAGCUCGUCGUGGGGUCUUUCCAGGGUUUUGUGGUGGCUAUCCUCUACUGCUUCCUCAAUGGUGAGGUGCAGGCGGAGCUGAGGCGGAAGUGGCGGCGCUGGCACCUGCAGGGCGUCCUGGGCUGGAACCCCAAAUACCGGCACCCGUCGGGAGGCAGCAACGGCGCCACGUGCAGCACGCAGGUUUCCAUGCUGACCCGCGUCAGCCCAGGUGCCCGCCGCUCCUCCAGCUUCCAAGCCGAAGUCUCCCUGGUCUGACCACCAGGAUCCCAGGGGCCCAAGGCGGCCCCUCCCGCCCCUUCCCACUCACCCCGGCAGACGCCGGGGACAGAGGCCUGCCCGGGCGCGGCCAGCCCCGGCCCUGGGCUCGGAGGCUGCCCCCGGCCCCCUGGUCUCUGGUCCGG2000000006ACACUCCUAGAGAACGCAGCCCUAGAGCCUGCCUGGAGCGUUUCUAGCAAGUGAGAGAGAUGGGAGCUCCUCUCCUGGAGGAUUGCAGGUGGA2000000006ACUCAGUCAUUAGACUCCUCCUCCAAAGGCCCCCUACGCCAAUCAAGGGCAAAAAGUCUACAUACUUUCAUCCUGACUCUGCCCCCUGCUGGCUCUUCUGCCCAAUUGGAGGAAAGCAACCGGUGGAUCCUCAAACAACACUGGUGUGACCUGAGGGCAGAAAGGUUCUGCCCGGGAAGGUCACCAGCACCAACACCACGGUAGUGCCUGAAAUUUCACCAUUGCUGUCAAGUUCCUUUGGGUUAAGCAUUACCACUCAGGCAUUUG2000000006ACUGAAGAUGCAGCUCACUACCCUAUUCUCUCUUUACGCUUAGUUAUCAGCUUUUUAAAGUGGGUUAUUCUGGAGUUUUUGUUUGGAGAGCACACCUAUCUUAGUGGUUCCCCACCGAAGUGGACUGGCCCCUGGGUCAGUCUGGUGGGAGGACGGUGCAACCCAAGG2000000006ACUGAGGG2000000006ACUCUGAAGCCUCUGGGAAAUGAGAAGGCAGCCACCAGCGAAUGCUAGGUCUCGG2000000006ACUAAGCCUACCUGCUCUCCAAGUCUCAGUGGCUUCAUCUGUCAAGUGGGAUCUGUCACACCAGCCAUACUUAUCUCUCUGUGCUGUGGAAGCAACAGGAAUCAAGAGCUGCCCUCCUUGUCCACCCACCUAUGUGCCAACUGUUGUAACUAGGCUCAGAGAUGUGCACCCAUGGGCUCUGACAGAAAGCAGAUACCUCACCCUGCUACACAUACAGGAUUUGA2000000006ACUCAGAUCUGUCUGAUAGGAAUGUGAAAGCACGG2000000006ACUCUUACUGCUAACUUUUGUGUAUCGUAACCAGCCAGAUCCUCUUGGUUAUUUGUUUACCACUUGUAUUAUUAAUGCCAUUAUCCCUGAAUCCCCCUUGCCACCCCACCCUCCCUGGAGUGUGGCUGAGGAGGCCUCCAUCUCAUGUAUCAUCUGGAUAGGAGCCUGCUGGUCACAGCCUCCUCUGUCUGCCCUUCACCCCAGUGGCCACUCAGCUUCCUACCCACACCUCUGCCAGAAGAUCCCCUCAGG2000000006ACUGCAACAGGCUUGUGCAACAAUAAAUGUUGGCUUGGAUUGGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1536 1629 1896 2064 2072 2127 2351 2386 2638
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 3:42536428:+ 3:42536521:+ 3:42536788:+ 3:42536956:+ 3:42536964:+ 3:42537019:+ 3:42537243:+ 3:42537278:+ 3:42537530:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
msuJfBpJvM5H
VyCX26p5UBRL
msuJfBpJvM5H
VyCX26p5UBRL
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
5Nnepx5V7yHo
msuJfBpJvM5H
VyCX26p5UBRL
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
UKen6WEino9G
msuJfBpJvM5H
VyCX26p5UBRL