General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000393278
Gene ID:	ENSG00000129071
Gene Name:	MBD4
Sequence (UNICHARACTER ENCODING)	CUUGCUCCGAGCGCGCAUGUCCGAAAGGGAAAGCCAGAAAAGCAGCAAAAGCAAUGGUGGCACUGGAGCCCCUAAGGCGCCAGCGCAACCAGAGCGCGAGCGAUUGGUCGGGGCGUGUGGGGGCGGUGCGUCUUCCUCGAGAAUGGAUUUGAUUGGUGGAGCGUGGAAAUGGCGGCUGUAGCCGAGGGGGCGGCCGGAAAGCAGCGGCGGCGUCUGGGGCGCUUUCGCAACAUUCAGACCUCGGUUGCAGCCCGGUGCCGUGAGCUGAAGAGGUUUCACAUCUUACUCCGCCCCACACCCUGGGCGUUGCGGCGCUGGGCUCGUUGCUGCAGCCGGACCCUGCUCGAUGGGCACGACUGGGCUGGAGAGUCUGAGUCUGGGGGACCGCGGAGCUGCCCCCACCGUCACCUCUAGUGAGCGCCUAGUCCCAGACCCGCCGAAUGACCUCCGCAAAGAAGAUGUUGCUAUGGAAUUGGAAAGAGUGGGAGAAGAUGAGGAACAAAUGAUGAUAAAAAGAAGCAGUGAAUGUAAUCCCUUGCUACAAGAACCCAUCGCUUCUGCUCAGUUUGGUGCUACUGCAGGAACAGAAUGCCAAGAUACCAUCCCACGAACACAGAUAGAAAGAAGGAAAACAAGCCUGUAUUUUUCCAGCAAAUAUAACAAAGAAGCUCUUAGCCCCCCACGACGUAAAGCCUPUAAGAAAUGGACACCPCCUCGGUCACCUUUUAAUCUCGUUCAAGAAACACUUUUUCAUGAUCCAUGGAAGCUUCUCAUCGCUACUAUAUUUCUCAAUCGGЖCCUCAGGCAAAAUGGCAAUACCUGUGCUUUGGAAGUUUCUGGAGAAGUAUCCUUCAGCUGAGGUAGCAAGAACCGCAGACUGGAGAGAUGUGUCAGAACUUCUUAAACCUCUUGGUCUCUACGAUCUUCGGGCAAAAACCAUUGUCAAGUUCUCAGAUGAAUACCUGACAAAGCAGUGGAAGUAUCCAAUUGAGCUUCAUGGGAUUGGUAAAUAUGGCAACGACUCUUACCGAAUUUUUUGUGUCAAUGAGUGGAAGCAGGUGCACCCUGAAGACCACAAAUUAAAUAAAUAUCAUGACUGGCUUUGGGAAAAUCAUGAAAAAUUAAGUCUAUCUUAAACUCUGCAGCUUUCAAGCUCAUCUGUUAUGCAUAGCUUUGCACUUCAAAAAAGCUUAAUUAAGUACЖACCAACCACCUUUCCAGCCAUAGAGAUUUUAAUUAGCCCAACUAGAAGCCUAGUGUGUGUGCUUUCUUAAUGUGUGUGCCAAUGGUGGAUCUUUGCUACUGAAUGUGUUUGAACAUGUUUUGAGAUUUUUUUAAAAUAAAUUAUUAUUUGACAACAAUCCAAAAAAAAUACGGCUUUUCCAAUGAUGAAAUAUAAUCAGAAGAUGAAAAAUAGUUCUAAACUAUCAAUAAUACAAAGCAAAUUUCUAUCAGCCUUGCUAAAGCUAGGGGCCCACUAAAUAUUUUUAUCGGCUAGGCGUGGUGGUGCAUGCCUGUAAUCUCGGAAGGCUGAGGCAGGAGGAUCAUUUGAGCUCAUGAGGGCCCAGGAGGUCAAGGCUUCAGUGAGCCAUGAUCAUGCCACUGCACUCCAGUCUGGAUGACAGAGAGAGACCCUGUCUCAAAAAAUAUAUAUUUAAAAAAUAAAAAUAAAAGCUGACCCCAAAG
Sequence (SHORT NAMES ENCODING)	CUUGCUCCGAGCGCGCAUGUCCGAAAGGGAAAGCCAGAAAAGCAGCAAAAGCAAUGGUGGCACUGGAGCCCCUAAGGCGCCAGCGCAACCAGAGCGCGAGCGAUUGGUCGGGGCGUGUGGGGGCGGUGCGUCUUCCUCGAGAAUGGAUUUGAUUGGUGGAGCGUGGAAAUGGCGGCUGUAGCCGAGGGGGCGGCCGGAAAGCAGCGGCGGCGUCUGGGGCGCUUUCGCAACAUUCAGACCUCGGUUGCAGCCCGGUGCCGUGAGCUGAAGAGGUUUCACAUCUUACUCCGCCCCACACCCUGGGCGUUGCGGCGCUGGGCUCGUUGCUGCAGCCGGACCCUGCUCGAUGGGCACGACUGGGCUGGAGAGUCUGAGUCUGGGGGACCGCGGAGCUGCCCCCACCGUCACCUCUAGUGAGCGCCUAGUCCCAGACCCGCCGAAUGACCUCCGCAAAGAAGAUGUUGCUAUGGAAUUGGAAAGAGUGGGAGAAGAUGAGGAACAAAUGAUGAUAAAAAGAAGCAGUGAAUGUAAUCCCUUGCUACAAGAACCCAUCGCUUCUGCUCAGUUUGGUGCUACUGCAGGAACAGAAUGCCAAGAUACCAUCCCACGAACACAGAUAGAAAGAAGGAAAACAAGCCUGUAUUUUUCCAGCAAAUAUAACAAAGAAGCUCUUAGCCCCCCACGACGUAAAGCCUYUAAGAAAUGGACACCYCCUCGGUCACCUUUUAAUCUCGUUCAAGAAACACUUUUUCAUGAUCCAUGGAAGCUUCUCAUCGCUACUAUAUUUCUCAAUCGGm6ACCUCAGGCAAAAUGGCAAUACCUGUGCUUUGGAAGUUUCUGGAGAAGUAUCCUUCAGCUGAGGUAGCAAGAACCGCAGACUGGAGAGAUGUGUCAGAACUUCUUAAACCUCUUGGUCUCUACGAUCUUCGGGCAAAAACCAUUGUCAAGUUCUCAGAUGAAUACCUGACAAAGCAGUGGAAGUAUCCAAUUGAGCUUCAUGGGAUUGGUAAAUAUGGCAACGACUCUUACCGAAUUUUUUGUGUCAAUGAGUGGAAGCAGGUGCACCCUGAAGACCACAAAUUAAAUAAAUAUCAUGACUGGCUUUGGGAAAAUCAUGAAAAAUUAAGUCUAUCUUAAACUCUGCAGCUUUCAAGCUCAUCUGUUAUGCAUAGCUUUGCACUUCAAAAAAGCUUAAUUAAGUACm6AACCAACCACCUUUCCAGCCAUAGAGAUUUUAAUUAGCCCAACUAGAAGCCUAGUGUGUGUGCUUUCUUAAUGUGUGUGCCAAUGGUGGAUCUUUGCUACUGAAUGUGUUUGAACAUGUUUUGAGAUUUUUUUAAAAUAAAUUAUUAUUUGACAACAAUCCAAAAAAAAUACGGCUUUUCCAAUGAUGAAAUAUAAUCAGAAGAUGAAAAAUAGUUCUAAACUAUCAAUAAUACAAAGCAAAUUUCUAUCAGCCUUGCUAAAGCUAGGGGCCCACUAAAUAUUUUUAUCGGCUAGGCGUGGUGGUGCAUGCCUGUAAUCUCGGAAGGCUGAGGCAGGAGGAUCAUUUGAGCUCAUGAGGGCCCAGGAGGUCAAGGCUUCAGUGAGCCAUGAUCAUGCCACUGCACUCCAGUCUGGAUGACAGAGAGAGACCCUGUCUCAAAAAAUAUAUAUUUAAAAAAUAAAAAUAAAAGCUGACCCCAAAG
Sequence (MODOMICS CODE ENCODING)	CUUGCUCCGAGCGCGCAUGUCCGAAAGGGAAAGCCAGAAAAGCAGCAAAAGCAAUGGUGGCACUGGAGCCCCUAAGGCGCCAGCGCAACCAGAGCGCGAGCGAUUGGUCGGGGCGUGUGGGGGCGGUGCGUCUUCCUCGAGAAUGGAUUUGAUUGGUGGAGCGUGGAAAUGGCGGCUGUAGCCGAGGGGGCGGCCGGAAAGCAGCGGCGGCGUCUGGGGCGCUUUCGCAACAUUCAGACCUCGGUUGCAGCCCGGUGCCGUGAGCUGAAGAGGUUUCACAUCUUACUCCGCCCCACACCCUGGGCGUUGCGGCGCUGGGCUCGUUGCUGCAGCCGGACCCUGCUCGAUGGGCACGACUGGGCUGGAGAGUCUGAGUCUGGGGGACCGCGGAGCUGCCCCCACCGUCACCUCUAGUGAGCGCCUAGUCCCAGACCCGCCGAAUGACCUCCGCAAAGAAGAUGUUGCUAUGGAAUUGGAAAGAGUGGGAGAAGAUGAGGAACAAAUGAUGAUAAAAAGAAGCAGUGAAUGUAAUCCCUUGCUACAAGAACCCAUCGCUUCUGCUCAGUUUGGUGCUACUGCAGGAACAGAAUGCCAAGAUACCAUCCCACGAACACAGAUAGAAAGAAGGAAAACAAGCCUGUAUUUUUCCAGCAAAUAUAACAAAGAAGCUCUUAGCCCCCCACGACGUAAAGCCU2000000009UUAAGAAAUGGACACC2000000009UCCUCGGUCACCUUUUAAUCUCGUUCAAGAAACACUUUUUCAUGAUCCAUGGAAGCUUCUCAUCGCUACUAUAUUUCUCAAUCGG2000000006ACCUCAGGCAAAAUGGCAAUACCUGUGCUUUGGAAGUUUCUGGAGAAGUAUCCUUCAGCUGAGGUAGCAAGAACCGCAGACUGGAGAGAUGUGUCAGAACUUCUUAAACCUCUUGGUCUCUACGAUCUUCGGGCAAAAACCAUUGUCAAGUUCUCAGAUGAAUACCUGACAAAGCAGUGGAAGUAUCCAAUUGAGCUUCAUGGGAUUGGUAAAUAUGGCAACGACUCUUACCGAAUUUUUUGUGUCAAUGAGUGGAAGCAGGUGCACCCUGAAGACCACAAAUUAAAUAAAUAUCAUGACUGGCUUUGGGAAAAUCAUGAAAAAUUAAGUCUAUCUUAAACUCUGCAGCUUUCAAGCUCAUCUGUUAUGCAUAGCUUUGCACUUCAAAAAAGCUUAAUUAAGUAC2000000006AACCAACCACCUUUCCAGCCAUAGAGAUUUUAAUUAGCCCAACUAGAAGCCUAGUGUGUGUGCUUUCUUAAUGUGUGUGCCAAUGGUGGAUCUUUGCUACUGAAUGUGUUUGAACAUGUUUUGAGAUUUUUUUAAAAUAAAUUAUUAUUUGACAACAAUCCAAAAAAAAUACGGCUUUUCCAAUGAUGAAAUAUAAUCAGAAGAUGAAAAAUAGUUCUAAACUAUCAAUAAUACAAAGCAAAUUUCUAUCAGCCUUGCUAAAGCUAGGGGCCCACUAAAUAUUUUUAUCGGCUAGGCGUGGUGGUGCAUGCCUGUAAUCUCGGAAGGCUGAGGCAGGAGGAUCAUUUGAGCUCAUGAGGGCCCAGGAGGUCAAGGCUUCAGUGAGCCAUGAUCAUGCCACUGCACUCCAGUCUGGAUGACAGAGAGAGACCCUGUCUCAAAAAAUAUAUAUUUAAAAAAUAAAAAUAAAAGCUGACCCCAAAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	696	712	797	1202
Modification Positions	Y	Y	m6A	m6A
Genomic Coordinates	3:129433957:-	3:129433941:-	3:129433856:-	3:129431434:-
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	6UuHp6YApVKv NjZ8bGGJsNSR aJksAshEgQ8U D6ncpa2PPWj3 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY