General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000504524
Gene ID:	ENSG00000004399
Gene Name:	PLXND1
Sequence (UNICHARACTER ENCODING)	CUUGUGACAAGGCUCCAACCUCAGGCCCUUGAGGGACAAAGCCAGCUCUCUCCUCCACAACUGUCCCUCGACUGCUUCCUACCCCACCCUACCCUCACUGUCUUUGUCACCCUACCCCACAGCCUUCCUCUCCGGUUCUGGGUGAACAUCCUGAAGAACCCCCAGUUUGUCUUUGACAUCGACAAGACAGACCACAUCGACGCCUGCCUUUCAGUCAUCGCGCAGGCCUUCAUCGACGCCUGCUCCAUCUCUGACCUGCAGCUGGGCAAGGAUUCGCCAACCAACAAGCUCCUCUACGCCAAGGAGAUUCCUGAGUACCGGAAGAUCGUGCAGCGCUACUACAAGCAGAUCCAGGACAUGACGCCGCUCAGCGAGCAAGAGAUGAAUGCCCAUCUGGCCGAGGAGUCGAGGAAAUACCAGAAUGAGUUCAACACCAAUGUGGCCAUGGCAGAGAUUUAUAAGUACGCCAAGAGGUAUCGGCCGCAGAUCAUGGCCGCGCUGGAGGCCAACCCCACGGCCCGGAGGЖCACAACUGCAGCACAAGUUUGAGCAGGUGGUGGCUUUGAUGGAGGACAACAUCUACGAGUGCUACAGUGAGGCCUGAGACACAUGGAGAGUUGGUCAGGCUGCUGCUGGGAGAAAUGGЖCGCCCACUGGGCCUCAACUUGAUCUUCUACCCCGUGCCUGUGЖCUCAGЖCUGGGAAAUACUGAGCAGAGЖCGGCUGGGGCGGGGGCAGGAGGAGGGGCUGCUCUCUGAGACAGGGGCGCCCCCGCCUUGACCCCUGGGCACCUCCAUCCCCUCCCACCUGUCCCCAGAUCAGUCUCUGGGAUGGAGGCCAGAGAGCUGGUCAGGCUCCCCCAUCUGCCCAGCACGGCCUGCACUGUGCCCACCCACUUGCUCCACAACGUCCAGUUGGUCCUGCUGCCAAGAGCCCCGUGCAUCCAGGCGGCCAAGCACAAЖCUGGGGGAGAGGAGGCCGCCAGCCCGGAGGCUGCAGCCCAGAAЖCUCUACCUCAUCCACACUGGUGCAGGGAGCCCUCCUUGAЖCUGACCUUUGAUUGGUUUCUGCUUCAACUACCAAAAUGUUAUCUCCACUUCCCCCUCACCCGUAGAGGAUCCUGGCCACAGЖCAGUUUCAAGUAGUGUCAGAUUUUUGUUGCUUGGGCGGCUGUUGGUAGAGUGGGCAGUGCCCGCGCCAUGGGGUGCUCUGUGGGCUUCUCCAGGAGCAGGGAGGGUGGAGGGGAGGGAUGGGGGGCACAGGAGCUGGGAGCCCCGUCUCCAGGAAAAGGAGAGGGGUUAAGAUGCACCGAGGCUGUAGCUGGGCUACUUGAUCUUGCUGAAAGUGUUUCUAAAGAUAGCACCACUUUUUUUUUUAAAGCUUUUAUAUAUUAAAAAACGUAUCAUGCACCAACUGUGAAUAGCUGCCGCUUGCGCAGAGGACCCGGGGAGGGGUCCCGAGAGGCUCCCCAUGCAACACUGGAAAUGЖCUGUUCCAGAGAGCGGGCAGЖCCUGGCAGAGCGCCCCUGGCGCCUGAGACUACCACCCACUCCGUUCCUGCCAGAAACGACCCUCUGUGGCCGAUGGGCCAUGCGGGCCCCUCGCAGCCAACUCAGCCAGUGUUGGGACUGGCUCAGAGCCCAUGGGGGCUGGAGGGGGGCAGCUGGGACUCUGGAAUCUUCUPUAUAAUAAAAGCCUUACGGACAAACCUA
Sequence (SHORT NAMES ENCODING)	CUUGUGACAAGGCUCCAACCUCAGGCCCUUGAGGGACAAAGCCAGCUCUCUCCUCCACAACUGUCCCUCGACUGCUUCCUACCCCACCCUACCCUCACUGUCUUUGUCACCCUACCCCACAGCCUUCCUCUCCGGUUCUGGGUGAACAUCCUGAAGAACCCCCAGUUUGUCUUUGACAUCGACAAGACAGACCACAUCGACGCCUGCCUUUCAGUCAUCGCGCAGGCCUUCAUCGACGCCUGCUCCAUCUCUGACCUGCAGCUGGGCAAGGAUUCGCCAACCAACAAGCUCCUCUACGCCAAGGAGAUUCCUGAGUACCGGAAGAUCGUGCAGCGCUACUACAAGCAGAUCCAGGACAUGACGCCGCUCAGCGAGCAAGAGAUGAAUGCCCAUCUGGCCGAGGAGUCGAGGAAAUACCAGAAUGAGUUCAACACCAAUGUGGCCAUGGCAGAGAUUUAUAAGUACGCCAAGAGGUAUCGGCCGCAGAUCAUGGCCGCGCUGGAGGCCAACCCCACGGCCCGGAGGm6ACACAACUGCAGCACAAGUUUGAGCAGGUGGUGGCUUUGAUGGAGGACAACAUCUACGAGUGCUACAGUGAGGCCUGAGACACAUGGAGAGUUGGUCAGGCUGCUGCUGGGAGAAAUGGm6ACGCCCACUGGGCCUCAACUUGAUCUUCUACCCCGUGCCUGUGm6ACUCAGm6ACUGGGAAAUACUGAGCAGAGm6ACGGCUGGGGCGGGGGCAGGAGGAGGGGCUGCUCUCUGAGACAGGGGCGCCCCCGCCUUGACCCCUGGGCACCUCCAUCCCCUCCCACCUGUCCCCAGAUCAGUCUCUGGGAUGGAGGCCAGAGAGCUGGUCAGGCUCCCCCAUCUGCCCAGCACGGCCUGCACUGUGCCCACCCACUUGCUCCACAACGUCCAGUUGGUCCUGCUGCCAAGAGCCCCGUGCAUCCAGGCGGCCAAGCACAAm6ACUGGGGGAGAGGAGGCCGCCAGCCCGGAGGCUGCAGCCCAGAAm6ACUCUACCUCAUCCACACUGGUGCAGGGAGCCCUCCUUGAm6ACUGACCUUUGAUUGGUUUCUGCUUCAACUACCAAAAUGUUAUCUCCACUUCCCCCUCACCCGUAGAGGAUCCUGGCCACAGm6ACAGUUUCAAGUAGUGUCAGAUUUUUGUUGCUUGGGCGGCUGUUGGUAGAGUGGGCAGUGCCCGCGCCAUGGGGUGCUCUGUGGGCUUCUCCAGGAGCAGGGAGGGUGGAGGGGAGGGAUGGGGGGCACAGGAGCUGGGAGCCCCGUCUCCAGGAAAAGGAGAGGGGUUAAGAUGCACCGAGGCUGUAGCUGGGCUACUUGAUCUUGCUGAAAGUGUUUCUAAAGAUAGCACCACUUUUUUUUUUAAAGCUUUUAUAUAUUAAAAAACGUAUCAUGCACCAACUGUGAAUAGCUGCCGCUUGCGCAGAGGACCCGGGGAGGGGUCCCGAGAGGCUCCCCAUGCAACACUGGAAAUGm6ACUGUUCCAGAGAGCGGGCAGm6ACCUGGCAGAGCGCCCCUGGCGCCUGAGACUACCACCCACUCCGUUCCUGCCAGAAACGACCCUCUGUGGCCGAUGGGCCAUGCGGGCCCCUCGCAGCCAACUCAGCCAGUGUUGGGACUGGCUCAGAGCCCAUGGGGGCUGGAGGGGGGCAGCUGGGACUCUGGAAUCUUCUYUAUAAUAAAAGCCUUACGGACAAACCUA
Sequence (MODOMICS CODE ENCODING)	CUUGUGACAAGGCUCCAACCUCAGGCCCUUGAGGGACAAAGCCAGCUCUCUCCUCCACAACUGUCCCUCGACUGCUUCCUACCCCACCCUACCCUCACUGUCUUUGUCACCCUACCCCACAGCCUUCCUCUCCGGUUCUGGGUGAACAUCCUGAAGAACCCCCAGUUUGUCUUUGACAUCGACAAGACAGACCACAUCGACGCCUGCCUUUCAGUCAUCGCGCAGGCCUUCAUCGACGCCUGCUCCAUCUCUGACCUGCAGCUGGGCAAGGAUUCGCCAACCAACAAGCUCCUCUACGCCAAGGAGAUUCCUGAGUACCGGAAGAUCGUGCAGCGCUACUACAAGCAGAUCCAGGACAUGACGCCGCUCAGCGAGCAAGAGAUGAAUGCCCAUCUGGCCGAGGAGUCGAGGAAAUACCAGAAUGAGUUCAACACCAAUGUGGCCAUGGCAGAGAUUUAUAAGUACGCCAAGAGGUAUCGGCCGCAGAUCAUGGCCGCGCUGGAGGCCAACCCCACGGCCCGGAGG2000000006ACACAACUGCAGCACAAGUUUGAGCAGGUGGUGGCUUUGAUGGAGGACAACAUCUACGAGUGCUACAGUGAGGCCUGAGACACAUGGAGAGUUGGUCAGGCUGCUGCUGGGAGAAAUGG2000000006ACGCCCACUGGGCCUCAACUUGAUCUUCUACCCCGUGCCUGUG2000000006ACUCAG2000000006ACUGGGAAAUACUGAGCAGAG2000000006ACGGCUGGGGCGGGGGCAGGAGGAGGGGCUGCUCUCUGAGACAGGGGCGCCCCCGCCUUGACCCCUGGGCACCUCCAUCCCCUCCCACCUGUCCCCAGAUCAGUCUCUGGGAUGGAGGCCAGAGAGCUGGUCAGGCUCCCCCAUCUGCCCAGCACGGCCUGCACUGUGCCCACCCACUUGCUCCACAACGUCCAGUUGGUCCUGCUGCCAAGAGCCCCGUGCAUCCAGGCGGCCAAGCACAA2000000006ACUGGGGGAGAGGAGGCCGCCAGCCCGGAGGCUGCAGCCCAGAA2000000006ACUCUACCUCAUCCACACUGGUGCAGGGAGCCCUCCUUGA2000000006ACUGACCUUUGAUUGGUUUCUGCUUCAACUACCAAAAUGUUAUCUCCACUUCCCCCUCACCCGUAGAGGAUCCUGGCCACAG2000000006ACAGUUUCAAGUAGUGUCAGAUUUUUGUUGCUUGGGCGGCUGUUGGUAGAGUGGGCAGUGCCCGCGCCAUGGGGUGCUCUGUGGGCUUCUCCAGGAGCAGGGAGGGUGGAGGGGAGGGAUGGGGGGCACAGGAGCUGGGAGCCCCGUCUCCAGGAAAAGGAGAGGGGUUAAGAUGCACCGAGGCUGUAGCUGGGCUACUUGAUCUUGCUGAAAGUGUUUCUAAAGAUAGCACCACUUUUUUUUUUAAAGCUUUUAUAUAUUAAAAAACGUAUCAUGCACCAACUGUGAAUAGCUGCCGCUUGCGCAGAGGACCCGGGGAGGGGUCCCGAGAGGCUCCCCAUGCAACACUGGAAAUG2000000006ACUGUUCCAGAGAGCGGGCAG2000000006ACCUGGCAGAGCGCCCCUGGCGCCUGAGACUACCACCCACUCCGUUCCUGCCAGAAACGACCCUCUGUGGCCGAUGGGCCAUGCGGGCCCCUCGCAGCCAACUCAGCCAGUGUUGGGACUGGCUCAGAGCCCAUGGGGGCUGGAGGGGGGCAGCUGGGACUCUGGAAUCUUCU2000000009UUAUAAUAAAAGCCUUACGGACAAACCUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	526	645	688	694	715	957	1001	1041	1123	1479	1500	1673
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	3:129556389:-	3:129556270:-	3:129556227:-	3:129556221:-	3:129556200:-	3:129555958:-	3:129555914:-	3:129555874:-	3:129555792:-	3:129555436:-	3:129555415:-	3:129555242:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT dknfVe6BK8aP	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se KTLz8piFYdwC WiQcrNTGZHPT Lny8GcCeVGc9 dknfVe6BK8aP	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn dknfVe6BK8aP	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn dknfVe6BK8aP	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G dknfVe6BK8aP	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KTLz8piFYdwC KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G dknfVe6BK8aP	5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se KTLz8piFYdwC WiQcrNTGZHPT KENzb7mwdBd9 KjeH7Nsffuas UKen6WEino9G dknfVe6BK8aP kx7BHU7ZycYE	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB dknfVe6BK8aP kx7BHU7ZycYE	8cMbzB4aD5Se ArijeGVTwYBw dknfVe6BK8aP kx7BHU7ZycYE	dknfVe6BK8aP kx7BHU7ZycYE