General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000491062
Gene ID:	ENSG00000114416
Gene Name:	FXR1
Sequence (UNICHARACTER ENCODING)	CUUUGCGGUUCCAACAUGGCGGAGCUGACGGUGGAGGUUCGCGGCUCUAACGGGGCUUUCUACAAGGUAUAUUCAAGAGCAAAUGACCAAGAGCCAUGUGGGUGGUGGUUGGCUAAAGUUCGGAUGAUGAAAGGAGAAUUUUAUGUCAUUGAAUAUGCUGCUUGUGACGCUACUUACЖAUGAAAUAGUCACAUUUGAACGACUUCGGCCUGUCAAUCAAAAUAAAACUGUCAAAAAAAAUACCUUCUPUAAAUGCACAGUGGAUGUUCCUGAGGAUUUGAGAGAGGCGUGUGCUAAUGAAAAUGCACAUAAAGAUUUUAAGAAAGCAGUAGGAGCAUGCAGAAUUUUUUACCAUCCAGAAACAACACAGCUAAUGAUACUGUCUGCCAGUGAAGCAACUGUGAAGAGAGUAAЖCAUCUUAAGUGACAUGCAUUUGCGAAGUAUUCGUACGAAGUUGAUGCUUAUGUCCAGAAAUGAAGAGGCCACUAAGCAUUUAGAAUGCACAAAACAACUUGCAGCAGCUUUUCAUGAGGAAUUUGUUGUGAGAGAAGAUUUAAUGGGCCUGGCAAUAGGAACACAUGGUAGUAACAPCCAGCAAGCUAGGAAGGUUCCUGGAGUUACCGCCAUUGAGCUAGAUGAAGAUACUGGAACAUUCAGAAUCUACGGAGAGAGUGCUGAUGCUGUAAAAAAGGCUAGAGGUUUCUUGGAAUUUGUGGAGGAUUUUAUUCAGGUUCCUAGGAAUCUCGUUGGAAAAGUAAUUGGAAAAAAUGGCAAAGUUAUUCAAGAAAUAGUGGACAAAUCUGGUGUGGUUCGAGUGAGAAUUGAAGGGGACAAUGAAAAUAAAUUACCCAGAGAAGACGGUAUGGUUCCAUUUGUAUUUGUUGGCACUAAAGAAAGCAUUGGAAAUGUGCAGGUUCUUCUAGAGUAUCAUAUUGCCUAUCUAAAGGAAGUAGAACAGCUAAGAAUGGAACGCCUACAGAUUGAUGAACAGCUGCGACAGAUUGGUUCUAGGUCUUAUAGCGGAAGAGGCAGAGGUCGUCGGGGACCUAAUUACACCPCCGGUUAUGGUACAAAUUCUGAGCUGUCUAACCCCUCUGAAACGGAAUCUGAGCGUAAAGACGAGCUGAGUGAUUGGUCAUUGGCAGGAGAAGAUGAUCGAGACAGCCGACAUCAGCGUGACAGCAGGAGACGCCCAGGAGGAAGAGGCAGAAGUGUUUCAGGGGGUCGAGGUCGUGGUGGACCACGUGGUGGCAAAUCCPCCAUCAGUUCUGUGCUCAAAGAUCCAGЖCAGCAAUCCAUACЖGCUUACUUGAUAAUACAGAAUCAGAUCAGACUGCAGACACUGAUGCCAGCGAAUCUCAUCACAGUACUAACCGUCGUAGGCGGUCUCGUAGACGAAGGACUGAUGAAGAUGCUGUUCUGAUGGAUGGAAUGACUGAAUCUGAUACAGCUUCAGUUAAUGAAAAUGGGCUAGGCAAAAGAUGUGAUUGAAGAGCAUGGUCCUUCAGAAAAGGCAAUAAACGGCCCAACUAGUGCUUCUGGCGAUGACAUUUCUAAGCUACAGCGUACUCCAGGAGAAGAAAAGAUUAAUACCUUAAAAGAAGAAAACACUCAAGAAGCAGCAGUCCUGAAUGGUGUUUCAUAAЖCUGAAGAAGUUCCUAGUUUACAGUUCUUUUACAUUACAUUUACAAUAGUGCUUGUACAAGCUUGCCAAAGAUAGAAUAUGGAUCGCCAGUCUPUACAUCGCACUUUCAGUUCCPCCAUUUGGAAU
Sequence (SHORT NAMES ENCODING)	CUUUGCGGUUCCAACAUGGCGGAGCUGACGGUGGAGGUUCGCGGCUCUAACGGGGCUUUCUACAAGGUAUAUUCAAGAGCAAAUGACCAAGAGCCAUGUGGGUGGUGGUUGGCUAAAGUUCGGAUGAUGAAAGGAGAAUUUUAUGUCAUUGAAUAUGCUGCUUGUGACGCUACUUACm6AAUGAAAUAGUCACAUUUGAACGACUUCGGCCUGUCAAUCAAAAUAAAACUGUCAAAAAAAAUACCUUCUYUAAAUGCACAGUGGAUGUUCCUGAGGAUUUGAGAGAGGCGUGUGCUAAUGAAAAUGCACAUAAAGAUUUUAAGAAAGCAGUAGGAGCAUGCAGAAUUUUUUACCAUCCAGAAACAACACAGCUAAUGAUACUGUCUGCCAGUGAAGCAACUGUGAAGAGAGUAAm6ACAUCUUAAGUGACAUGCAUUUGCGAAGUAUUCGUACGAAGUUGAUGCUUAUGUCCAGAAAUGAAGAGGCCACUAAGCAUUUAGAAUGCACAAAACAACUUGCAGCAGCUUUUCAUGAGGAAUUUGUUGUGAGAGAAGAUUUAAUGGGCCUGGCAAUAGGAACACAUGGUAGUAACAYCCAGCAAGCUAGGAAGGUUCCUGGAGUUACCGCCAUUGAGCUAGAUGAAGAUACUGGAACAUUCAGAAUCUACGGAGAGAGUGCUGAUGCUGUAAAAAAGGCUAGAGGUUUCUUGGAAUUUGUGGAGGAUUUUAUUCAGGUUCCUAGGAAUCUCGUUGGAAAAGUAAUUGGAAAAAAUGGCAAAGUUAUUCAAGAAAUAGUGGACAAAUCUGGUGUGGUUCGAGUGAGAAUUGAAGGGGACAAUGAAAAUAAAUUACCCAGAGAAGACGGUAUGGUUCCAUUUGUAUUUGUUGGCACUAAAGAAAGCAUUGGAAAUGUGCAGGUUCUUCUAGAGUAUCAUAUUGCCUAUCUAAAGGAAGUAGAACAGCUAAGAAUGGAACGCCUACAGAUUGAUGAACAGCUGCGACAGAUUGGUUCUAGGUCUUAUAGCGGAAGAGGCAGAGGUCGUCGGGGACCUAAUUACACCYCCGGUUAUGGUACAAAUUCUGAGCUGUCUAACCCCUCUGAAACGGAAUCUGAGCGUAAAGACGAGCUGAGUGAUUGGUCAUUGGCAGGAGAAGAUGAUCGAGACAGCCGACAUCAGCGUGACAGCAGGAGACGCCCAGGAGGAAGAGGCAGAAGUGUUUCAGGGGGUCGAGGUCGUGGUGGACCACGUGGUGGCAAAUCCYCCAUCAGUUCUGUGCUCAAAGAUCCAGm6ACAGCAAUCCAUACm6AGCUUACUUGAUAAUACAGAAUCAGAUCAGACUGCAGACACUGAUGCCAGCGAAUCUCAUCACAGUACUAACCGUCGUAGGCGGUCUCGUAGACGAAGGACUGAUGAAGAUGCUGUUCUGAUGGAUGGAAUGACUGAAUCUGAUACAGCUUCAGUUAAUGAAAAUGGGCUAGGCAAAAGAUGUGAUUGAAGAGCAUGGUCCUUCAGAAAAGGCAAUAAACGGCCCAACUAGUGCUUCUGGCGAUGACAUUUCUAAGCUACAGCGUACUCCAGGAGAAGAAAAGAUUAAUACCUUAAAAGAAGAAAACACUCAAGAAGCAGCAGUCCUGAAUGGUGUUUCAUAAm6ACUGAAGAAGUUCCUAGUUUACAGUUCUUUUACAUUACAUUUACAAUAGUGCUUGUACAAGCUUGCCAAAGAUAGAAUAUGGAUCGCCAGUCUYUACAUCGCACUUUCAGUUCCYCCAUUUGGAAU
Sequence (MODOMICS CODE ENCODING)	CUUUGCGGUUCCAACAUGGCGGAGCUGACGGUGGAGGUUCGCGGCUCUAACGGGGCUUUCUACAAGGUAUAUUCAAGAGCAAAUGACCAAGAGCCAUGUGGGUGGUGGUUGGCUAAAGUUCGGAUGAUGAAAGGAGAAUUUUAUGUCAUUGAAUAUGCUGCUUGUGACGCUACUUAC2000000006AAUGAAAUAGUCACAUUUGAACGACUUCGGCCUGUCAAUCAAAAUAAAACUGUCAAAAAAAAUACCUUCU2000000009UUAAAUGCACAGUGGAUGUUCCUGAGGAUUUGAGAGAGGCGUGUGCUAAUGAAAAUGCACAUAAAGAUUUUAAGAAAGCAGUAGGAGCAUGCAGAAUUUUUUACCAUCCAGAAACAACACAGCUAAUGAUACUGUCUGCCAGUGAAGCAACUGUGAAGAGAGUAA2000000006ACAUCUUAAGUGACAUGCAUUUGCGAAGUAUUCGUACGAAGUUGAUGCUUAUGUCCAGAAAUGAAGAGGCCACUAAGCAUUUAGAAUGCACAAAACAACUUGCAGCAGCUUUUCAUGAGGAAUUUGUUGUGAGAGAAGAUUUAAUGGGCCUGGCAAUAGGAACACAUGGUAGUAACA2000000009UCCAGCAAGCUAGGAAGGUUCCUGGAGUUACCGCCAUUGAGCUAGAUGAAGAUACUGGAACAUUCAGAAUCUACGGAGAGAGUGCUGAUGCUGUAAAAAAGGCUAGAGGUUUCUUGGAAUUUGUGGAGGAUUUUAUUCAGGUUCCUAGGAAUCUCGUUGGAAAAGUAAUUGGAAAAAAUGGCAAAGUUAUUCAAGAAAUAGUGGACAAAUCUGGUGUGGUUCGAGUGAGAAUUGAAGGGGACAAUGAAAAUAAAUUACCCAGAGAAGACGGUAUGGUUCCAUUUGUAUUUGUUGGCACUAAAGAAAGCAUUGGAAAUGUGCAGGUUCUUCUAGAGUAUCAUAUUGCCUAUCUAAAGGAAGUAGAACAGCUAAGAAUGGAACGCCUACAGAUUGAUGAACAGCUGCGACAGAUUGGUUCUAGGUCUUAUAGCGGAAGAGGCAGAGGUCGUCGGGGACCUAAUUACACC2000000009UCCGGUUAUGGUACAAAUUCUGAGCUGUCUAACCCCUCUGAAACGGAAUCUGAGCGUAAAGACGAGCUGAGUGAUUGGUCAUUGGCAGGAGAAGAUGAUCGAGACAGCCGACAUCAGCGUGACAGCAGGAGACGCCCAGGAGGAAGAGGCAGAAGUGUUUCAGGGGGUCGAGGUCGUGGUGGACCACGUGGUGGCAAAUCC2000000009UCCAUCAGUUCUGUGCUCAAAGAUCCAG2000000006ACAGCAAUCCAUAC2000000006AGCUUACUUGAUAAUACAGAAUCAGAUCAGACUGCAGACACUGAUGCCAGCGAAUCUCAUCACAGUACUAACCGUCGUAGGCGGUCUCGUAGACGAAGGACUGAUGAAGAUGCUGUUCUGAUGGAUGGAAUGACUGAAUCUGAUACAGCUUCAGUUAAUGAAAAUGGGCUAGGCAAAAGAUGUGAUUGAAGAGCAUGGUCCUUCAGAAAAGGCAAUAAACGGCCCAACUAGUGCUUCUGGCGAUGACAUUUCUAAGCUACAGCGUACUCCAGGAGAAGAAAAGAUUAAUACCUUAAAAGAAGAAAACACUCAAGAAGCAGCAGUCCUGAAUGGUGUUUCAUAA2000000006ACUGAAGAAGUUCCUAGUUUACAGUUCUUUUACAUUACAUUUACAAUAGUGCUUGUACAAGCUUGCCAAAGAUAGAAUAUGGAUCGCCAGUCU2000000009UUACAUCGCACUUUCAGUUCC2000000009UCCAUUUGGAAU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	178	248	413	590	1057	1258	1286	1300	1643	1736	1757
Modification Positions	m6A	Y	m6A	Y	Y	Y	m6A	m6A	m6A	Y	Y
Genomic Coordinates	3:180948386:+	3:180948456:+	3:180949258:+	3:180951389:+	3:180963081:+	3:180968242:+	3:180970173:+	3:180970187:+	3:180976293:+	3:180976386:+	3:180976407:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	ArijeGVTwYBw nfCHyrYzE6fB WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KTLz8piFYdwC BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8