General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000456210
Gene ID:	ENSG00000012171
Gene Name:	SEMA3B
Sequence (UNICHARACTER ENCODING)	GACAUGGUGCUAGAGGUUGGGUGGUCAGACACUGUGAUCCCGGGUGCUGUGCCCGCACUACGGGAAGGGGAAGCAGCGCGUGGGUCUCGCAUCAGGAGGCAAGGCCAGGACCCGCUGACCCAUGCCUCCUGCCGCGGUCAGAGCCCAAGUUUGUCAAGAACGACGUGGGCGGCCAGCGCAGCCUGGUCAACAAGUGGACGACGUUCCUGAAGGCGCGGCUGGUGUGCUCGGUGCCCGGCGUCGAGGGCGACACCCACUUCGAUCAGCUCCUGCCCCAGCAAGACCUUUGGCACCUUCAGUUCCACCAAGGACUUCCCAGACGAUGUCAUCCAGUUUGCGCGGAACCACCCCCUCAUGUACAACUCUGUCCUGCCCACUGGGGGGCGCCCUCUUUUCCUACAAGUUGGAGCCAAUUACACCUUCACUCAAAUUGCCGCGGACCGGGUUGCAGCCGCUGACGGACACUAUGACGUCCUCUUCAUUGGCACAGACGUUGGCACGGUGCUGAAGGUGAUCUCGGUCCCCAAGGGCAGUAGGCCCAGCGCAGAGGGGCUGCUCCUGGAGGAGCUGCACGUGUUUGAGGACUCGGCCGCUGUCACCAGCAUGCAAAUUUCUUCCAAGAGGGCGGUUCCGGCGGCAAGACGUAAGGAAUGGCGACCCCAGCACGUUGUGCUCCGGAGACUCGUCUCGUCCCGCGCUGCUGGAACACAAGGUGUUCGGCGUGGAGGGCAGCAGCGCCUUUCUGGAGUGUGAGCCCCGCUCGCUGCAGGCGCGCGUGGAGUGGACUUUCCAGCGCGCAGGGGUGACAGCCCACACCCAGGUGCUGGCAGAGGAGCGCACCGAGCGCACCGCCCGGGGACUACUGCUGCGCAGGCUGCGGCGCCGGGACUCGGGCGUGUACUUGUGCGCCGCCGUCGAGCAGGGCUUUACGCAACCGCUGCGUCGCCUGUCGCUGCACGUGUUGAGUGCUACGCAGGCCGAACGACUGGCGCGGGCCGAGGAGGCUGCGCCCGCCGCGCCGCCGGGCCCCAAACUCUGGUACCGGGЖCUUUCUGCAGCUGGUGGAGCCGGGCGGAGGUGGCAGCGCGAACUCCCUGCGCAUGUGCCGCCCGCAGCCUGCGCUGCAGUCACUGCCCCUGGAGUCGCGGAGAAAGGGCCGUAACCGGAGGACCCACGCCCCUGAGCCUCGCGCUGAGCGGGGGCCGCGCAGCGCAACGCACUGGUGACCAGЖCUGUCCCCACGCCGGGAACCAAGCAGGAGACGACAGGCGAGAGAGGAGCCAGACAGACCCUGAAAAGAAGGЖCGGGUUGGGGCCGGGCACAUUGGGGGUCACCGGCCGAUGGAGACACCAACCGACAGGCCCUGGCUGAGGGCAGCUGCGCGGGCUUAUUUAUUAACAGGAUAACCCUUGAAUGUAGCAGCCCCGGGAGGGCGGCACAGGUCGGGCGCAGGAUUCAGCCGGAGGGAAGGGACGGGGAAGCCGAGCUCCAGAGCAACGACCAGGGCCGAGGAGGUGCCUGGAGUGCCCACCCUGGGAGACAGACCCCACCUCCUUGGGUAGUGAGCAGUGAGCAGAAAGCUGUGAЖCAGGCUGGGCUGCUGGAGGUGGGGCGAGGCAGGCCGACUGUACUAAAGUAACGCAAUAAACGCAUUAUCAGCCAAAGCUGGAAUGGCCCCAGCAGAAAACCCCAGUCCUCGGCCUUGCUAUGUGGUCUUGGGCACCUUACUAGCGGUGUCAGGGCCCGAGUUUCUCCUGUCCAAGGUUGCCUGGUGAGGAUUAAAGGUGGUUCCGGCCAGGCGCGGUGGCUCACGCCUGUAAUCCCAACACUUUCGGAGGCCCAGGCGGACGGAUCACGAGGUCAGGAGAUGGAAACCAUCCCGGCUAACACGGUGAAACCCCGUCUGUACUAAAAAUACAAAAAAUUAGUCGGGCGUGGUGGCGGGCGCCUGUAAUCCUAGCUACUCAGGAGGCUGAGGCAGGAGAAUUGCUUGAACCUGGGAGGUGGAGGUUGCAAUGAGCCUAGAUCUCGCCGCUGCACUCCAGCCUGGGCGACAGAGCGAGACUCC
Sequence (SHORT NAMES ENCODING)	GACAUGGUGCUAGAGGUUGGGUGGUCAGACACUGUGAUCCCGGGUGCUGUGCCCGCACUACGGGAAGGGGAAGCAGCGCGUGGGUCUCGCAUCAGGAGGCAAGGCCAGGACCCGCUGACCCAUGCCUCCUGCCGCGGUCAGAGCCCAAGUUUGUCAAGAACGACGUGGGCGGCCAGCGCAGCCUGGUCAACAAGUGGACGACGUUCCUGAAGGCGCGGCUGGUGUGCUCGGUGCCCGGCGUCGAGGGCGACACCCACUUCGAUCAGCUCCUGCCCCAGCAAGACCUUUGGCACCUUCAGUUCCACCAAGGACUUCCCAGACGAUGUCAUCCAGUUUGCGCGGAACCACCCCCUCAUGUACAACUCUGUCCUGCCCACUGGGGGGCGCCCUCUUUUCCUACAAGUUGGAGCCAAUUACACCUUCACUCAAAUUGCCGCGGACCGGGUUGCAGCCGCUGACGGACACUAUGACGUCCUCUUCAUUGGCACAGACGUUGGCACGGUGCUGAAGGUGAUCUCGGUCCCCAAGGGCAGUAGGCCCAGCGCAGAGGGGCUGCUCCUGGAGGAGCUGCACGUGUUUGAGGACUCGGCCGCUGUCACCAGCAUGCAAAUUUCUUCCAAGAGGGCGGUUCCGGCGGCAAGACGUAAGGAAUGGCGACCCCAGCACGUUGUGCUCCGGAGACUCGUCUCGUCCCGCGCUGCUGGAACACAAGGUGUUCGGCGUGGAGGGCAGCAGCGCCUUUCUGGAGUGUGAGCCCCGCUCGCUGCAGGCGCGCGUGGAGUGGACUUUCCAGCGCGCAGGGGUGACAGCCCACACCCAGGUGCUGGCAGAGGAGCGCACCGAGCGCACCGCCCGGGGACUACUGCUGCGCAGGCUGCGGCGCCGGGACUCGGGCGUGUACUUGUGCGCCGCCGUCGAGCAGGGCUUUACGCAACCGCUGCGUCGCCUGUCGCUGCACGUGUUGAGUGCUACGCAGGCCGAACGACUGGCGCGGGCCGAGGAGGCUGCGCCCGCCGCGCCGCCGGGCCCCAAACUCUGGUACCGGGm6ACUUUCUGCAGCUGGUGGAGCCGGGCGGAGGUGGCAGCGCGAACUCCCUGCGCAUGUGCCGCCCGCAGCCUGCGCUGCAGUCACUGCCCCUGGAGUCGCGGAGAAAGGGCCGUAACCGGAGGACCCACGCCCCUGAGCCUCGCGCUGAGCGGGGGCCGCGCAGCGCAACGCACUGGUGACCAGm6ACUGUCCCCACGCCGGGAACCAAGCAGGAGACGACAGGCGAGAGAGGAGCCAGACAGACCCUGAAAAGAAGGm6ACGGGUUGGGGCCGGGCACAUUGGGGGUCACCGGCCGAUGGAGACACCAACCGACAGGCCCUGGCUGAGGGCAGCUGCGCGGGCUUAUUUAUUAACAGGAUAACCCUUGAAUGUAGCAGCCCCGGGAGGGCGGCACAGGUCGGGCGCAGGAUUCAGCCGGAGGGAAGGGACGGGGAAGCCGAGCUCCAGAGCAACGACCAGGGCCGAGGAGGUGCCUGGAGUGCCCACCCUGGGAGACAGACCCCACCUCCUUGGGUAGUGAGCAGUGAGCAGAAAGCUGUGAm6ACAGGCUGGGCUGCUGGAGGUGGGGCGAGGCAGGCCGACUGUACUAAAGUAACGCAAUAAACGCAUUAUCAGCCAAAGCUGGAAUGGCCCCAGCAGAAAACCCCAGUCCUCGGCCUUGCUAUGUGGUCUUGGGCACCUUACUAGCGGUGUCAGGGCCCGAGUUUCUCCUGUCCAAGGUUGCCUGGUGAGGAUUAAAGGUGGUUCCGGCCAGGCGCGGUGGCUCACGCCUGUAAUCCCAACACUUUCGGAGGCCCAGGCGGACGGAUCACGAGGUCAGGAGAUGGAAACCAUCCCGGCUAACACGGUGAAACCCCGUCUGUACUAAAAAUACAAAAAAUUAGUCGGGCGUGGUGGCGGGCGCCUGUAAUCCUAGCUACUCAGGAGGCUGAGGCAGGAGAAUUGCUUGAACCUGGGAGGUGGAGGUUGCAAUGAGCCUAGAUCUCGCCGCUGCACUCCAGCCUGGGCGACAGAGCGAGACUCC
Sequence (MODOMICS CODE ENCODING)	GACAUGGUGCUAGAGGUUGGGUGGUCAGACACUGUGAUCCCGGGUGCUGUGCCCGCACUACGGGAAGGGGAAGCAGCGCGUGGGUCUCGCAUCAGGAGGCAAGGCCAGGACCCGCUGACCCAUGCCUCCUGCCGCGGUCAGAGCCCAAGUUUGUCAAGAACGACGUGGGCGGCCAGCGCAGCCUGGUCAACAAGUGGACGACGUUCCUGAAGGCGCGGCUGGUGUGCUCGGUGCCCGGCGUCGAGGGCGACACCCACUUCGAUCAGCUCCUGCCCCAGCAAGACCUUUGGCACCUUCAGUUCCACCAAGGACUUCCCAGACGAUGUCAUCCAGUUUGCGCGGAACCACCCCCUCAUGUACAACUCUGUCCUGCCCACUGGGGGGCGCCCUCUUUUCCUACAAGUUGGAGCCAAUUACACCUUCACUCAAAUUGCCGCGGACCGGGUUGCAGCCGCUGACGGACACUAUGACGUCCUCUUCAUUGGCACAGACGUUGGCACGGUGCUGAAGGUGAUCUCGGUCCCCAAGGGCAGUAGGCCCAGCGCAGAGGGGCUGCUCCUGGAGGAGCUGCACGUGUUUGAGGACUCGGCCGCUGUCACCAGCAUGCAAAUUUCUUCCAAGAGGGCGGUUCCGGCGGCAAGACGUAAGGAAUGGCGACCCCAGCACGUUGUGCUCCGGAGACUCGUCUCGUCCCGCGCUGCUGGAACACAAGGUGUUCGGCGUGGAGGGCAGCAGCGCCUUUCUGGAGUGUGAGCCCCGCUCGCUGCAGGCGCGCGUGGAGUGGACUUUCCAGCGCGCAGGGGUGACAGCCCACACCCAGGUGCUGGCAGAGGAGCGCACCGAGCGCACCGCCCGGGGACUACUGCUGCGCAGGCUGCGGCGCCGGGACUCGGGCGUGUACUUGUGCGCCGCCGUCGAGCAGGGCUUUACGCAACCGCUGCGUCGCCUGUCGCUGCACGUGUUGAGUGCUACGCAGGCCGAACGACUGGCGCGGGCCGAGGAGGCUGCGCCCGCCGCGCCGCCGGGCCCCAAACUCUGGUACCGGG2000000006ACUUUCUGCAGCUGGUGGAGCCGGGCGGAGGUGGCAGCGCGAACUCCCUGCGCAUGUGCCGCCCGCAGCCUGCGCUGCAGUCACUGCCCCUGGAGUCGCGGAGAAAGGGCCGUAACCGGAGGACCCACGCCCCUGAGCCUCGCGCUGAGCGGGGGCCGCGCAGCGCAACGCACUGGUGACCAG2000000006ACUGUCCCCACGCCGGGAACCAAGCAGGAGACGACAGGCGAGAGAGGAGCCAGACAGACCCUGAAAAGAAGG2000000006ACGGGUUGGGGCCGGGCACAUUGGGGGUCACCGGCCGAUGGAGACACCAACCGACAGGCCCUGGCUGAGGGCAGCUGCGCGGGCUUAUUUAUUAACAGGAUAACCCUUGAAUGUAGCAGCCCCGGGAGGGCGGCACAGGUCGGGCGCAGGAUUCAGCCGGAGGGAAGGGACGGGGAAGCCGAGCUCCAGAGCAACGACCAGGGCCGAGGAGGUGCCUGGAGUGCCCACCCUGGGAGACAGACCCCACCUCCUUGGGUAGUGAGCAGUGAGCAGAAAGCUGUGA2000000006ACAGGCUGGGCUGCUGGAGGUGGGGCGAGGCAGGCCGACUGUACUAAAGUAACGCAAUAAACGCAUUAUCAGCCAAAGCUGGAAUGGCCCCAGCAGAAAACCCCAGUCCUCGGCCUUGCUAUGUGGUCUUGGGCACCUUACUAGCGGUGUCAGGGCCCGAGUUUCUCCUGUCCAAGGUUGCCUGGUGAGGAUUAAAGGUGGUUCCGGCCAGGCGCGGUGGCUCACGCCUGUAAUCCCAACACUUUCGGAGGCCCAGGCGGACGGAUCACGAGGUCAGGAGAUGGAAACCAUCCCGGCUAACACGGUGAAACCCCGUCUGUACUAAAAAUACAAAAAAUUAGUCGGGCGUGGUGGCGGGCGCCUGUAAUCCUAGCUACUCAGGAGGCUGAGGCAGGAGAAUUGCUUGAACCUGGGAGGUGGAGGUUGCAAUGAGCCUAGAUCUCGCCGCUGCACUCCAGCCUGGGCGACAGAGCGAGACUCC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1047	1230	1302	1585
Modification Positions	m6A	m6A	m6A	m6A
Genomic Coordinates	3:50276528:+	3:50276711:+	3:50276783:+	3:50277066:+
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 dknfVe6BK8aP	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn dknfVe6BK8aP	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ