Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000328557
Gene ID: ENSG00000174004
Gene Name: NRROS
Sequence (UNICHARACTER ENCODING) GAGUCGCCGAGCAGCCCGCUCUCCAUGUGACUUCAGUUUCCGUCCGUUCCUUCCGCUGGUGCUAAAAUAAUCUGAUGCCCCACAGCAAGGAGGUAGCCCAGCCCCGCGUUCGGCUGCUCUCGAGGAGGCCGGAGCCCCCGGAGACGAUGCGCCCCGCGCAGCCGCCUGCGCCUGCGGGAGCCGGCUGCCCUUGAGAUGGAGUUGCUGCCUCUUUGGCUCUGCCUGGGUUUUCACUUCCUGACCGUGGGCUGGAGGAACAGAAGCGGAACAGCCACAGCAGCCUCCCAAGGAGUCUGCAAGUUGGUGGGUGGAGCCGCUGACUGCCGAGGGCAGAGCCUCGCUUCGGUGCCCAGCAGCCUCCCGCCCCACGCCCGGAUGCUCACCCUGGAUGCCAACCCUCUCAAGACCCUGUGGAAUCACUCCCUCCAGCCUUACCCUCUCCUGGAGAGCCUCAGCCUGCACAGCUGCCACCUGGAGCGCAUCAGCCGCGGCGCCUUCCAGGAGCAAGGUCACCUGCGCAGCCUGGUCCUGGGGGACAACUGCCUCUCAGAGAACUACGAAGAGACGGCAGCCGCCCUCCACGCCCUGCCGGGCCUGCGGAGGCUGGACUUGUCAGGAAACGCCCUGACGGAGGACAUGGCAGCCCUCAUGCUCCAGAACCUCUCCUCGCUGCGGUCCGUGUCCCUGGCGGGGAACACCAUCAUGCGGCUGGACGACUCCGUCUUCGAGGGCCUGGAGCGUCUCCGGGAGCUGGAUCUGCAGAGGAACUACAUCUUCGAGAUCGAGGGCGGCGCUUUCGACGGCCUGGCUGAGCUGAGGCACCUCAACCUGGCCUUCAACAACCUCCCCUGCAUCGUGGЖCUUCGGGCUCACGCGGCUGCGGGUCCUCAACGUCAGCUACAACGUCCUGGAGUGGUUCCUCGCGACCGGGGGAGAGGCUGCCUUCGAGCUGGAGACGCUGGACCUGUCUCACAACCAGCUGCUGUUCUUCCCGCUGCUGCCCCAGUACAGCAAGUUGCGGACCCUCCUGCUGCGCGACAACAACAUGGGCUUCUACCGGGACCUGUACAACACCUCGUCGCCGAGGGAGAUGGUGGCCCAGUUCCUCCUCGUGGACGGCAACGUGACCAACAUCACCACCGUCAGCCUCUGGGAAGAAUUCUCCUCCAGCGACCUCGCAGAUCUCCGCUUCCUGGACAUGAGCCAGAACCAGUUCCAGUACCUGCCAGACGGCUUCCUGAGGAAAAUGCCUUCCCUCUCCCACCUGAACCUCCACCAGAAUUGCCUGAUGACGCUUCACAUUCGGGAGCACGAGCCCCCCGGAGCGCUCACCGAGCUGGЖCCUGAGCCACAACCAGCUGUCGGAGCUGCACCUGGCUCCGGGGCUGGCCAGCUGCCUGGGCAGCCUGCGCUUGUUCAACCUGAGCUCCAACCAGCUCCUGGGCGUCCCCCCUGGCCUCUUCGCCAAUGCUAGGAACAUCACUACACUUGACAUGAGCCACAAUCAGAUCUCACUUUGUCCCCUGCCAGCUGCCUCGGЖCCGGGUGGGCCCCCCUAGCUGUGUGGAUUUCAGGAAUAUGGCAUCUUUAAGGAGCCUGUCUCUGGAGGGCUGUGGCCUGGGGGCAUUGCCAGЖCUGCCCAUUCCAAGGGЖCCUCCCUGACCUACUUAGACCUCUCAAGCAACUGGGGGGUUCUGAAUGGGAGCCUCGCCCCACUCCAGGAUGUUGCCCCCAUGUUACAGGUCCUGUCUCUCAGGAACAUGGGCCUCCACUCCAGCUUUAUGGCGUUGGЖCUUCUCUGGGUUUGGGAAUCUCAGGGЖCUUAGAUCUGUCGGGGAAUUGCUUGACCACCUUCCCAAGGUUUGGGGGCAGCCUGGCCCUGGAGACCCUGGAUCUCCGUAGAAACUCGCUCACAGCCCUUCCCCAGAAGGCUGUGUCUGAGCAGCUCUCGAGAGGUCUGCGGACCAUCUACCUCAGUCAGAAUCCAUAUGЖCUGCUGUGGGGUGGAUGGCUGGGGGGCCCUGCAGCAUGGGCAGACGGUGGCCGACUGGGCCAUGGUCACCUGCAACCUCUCCUCCAAGAUCAUCCGCGUGACGGAGCUGCCCGGAGGUGUGCCUCGGGЖCUGCAAGUGGGAGCGGCUGGACCUGGGCCUGCUCUACCUCGUGCUCAUCCUCCCCAGCUGCCUCACCCUGCUGGUGGCCUGCACUGUCAUCGUCCUCACUUUUAAGAAGCCUCUGCUUCAGGUCAUCAAGAGCCGCUGCCACUGGUCCUCCGUUUACUGACCUGGCUGUGUGCCAAGACUCGAAAUUCGGUCCGCACACAACAGGЖCACUUUCUCUGCCAGCUUUCAAGAUGUGAUGCAGAGGCCAAGUCUGACGAAUUGAAGUUUCAAUUAAAAUUUAAUAUGUUUCCAUUCCUCAUCGCCCACCCCACCCCCGCCCCCACCACCGCCCAAGUUCUUUUUCCAUCAUUAUAAUUCAUCCUCAUUAUCUUGGUAAAAUAUUUAUUAAGUGACUUUUUCAGAAAUAAAAGGCAACGUGUCUCAUAAAUAUUUUUUAAAUUAAA
Sequence (SHORT NAMES ENCODING) GAGUCGCCGAGCAGCCCGCUCUCCAUGUGACUUCAGUUUCCGUCCGUUCCUUCCGCUGGUGCUAAAAUAAUCUGAUGCCCCACAGCAAGGAGGUAGCCCAGCCCCGCGUUCGGCUGCUCUCGAGGAGGCCGGAGCCCCCGGAGACGAUGCGCCCCGCGCAGCCGCCUGCGCCUGCGGGAGCCGGCUGCCCUUGAGAUGGAGUUGCUGCCUCUUUGGCUCUGCCUGGGUUUUCACUUCCUGACCGUGGGCUGGAGGAACAGAAGCGGAACAGCCACAGCAGCCUCCCAAGGAGUCUGCAAGUUGGUGGGUGGAGCCGCUGACUGCCGAGGGCAGAGCCUCGCUUCGGUGCCCAGCAGCCUCCCGCCCCACGCCCGGAUGCUCACCCUGGAUGCCAACCCUCUCAAGACCCUGUGGAAUCACUCCCUCCAGCCUUACCCUCUCCUGGAGAGCCUCAGCCUGCACAGCUGCCACCUGGAGCGCAUCAGCCGCGGCGCCUUCCAGGAGCAAGGUCACCUGCGCAGCCUGGUCCUGGGGGACAACUGCCUCUCAGAGAACUACGAAGAGACGGCAGCCGCCCUCCACGCCCUGCCGGGCCUGCGGAGGCUGGACUUGUCAGGAAACGCCCUGACGGAGGACAUGGCAGCCCUCAUGCUCCAGAACCUCUCCUCGCUGCGGUCCGUGUCCCUGGCGGGGAACACCAUCAUGCGGCUGGACGACUCCGUCUUCGAGGGCCUGGAGCGUCUCCGGGAGCUGGAUCUGCAGAGGAACUACAUCUUCGAGAUCGAGGGCGGCGCUUUCGACGGCCUGGCUGAGCUGAGGCACCUCAACCUGGCCUUCAACAACCUCCCCUGCAUCGUGGm6ACUUCGGGCUCACGCGGCUGCGGGUCCUCAACGUCAGCUACAACGUCCUGGAGUGGUUCCUCGCGACCGGGGGAGAGGCUGCCUUCGAGCUGGAGACGCUGGACCUGUCUCACAACCAGCUGCUGUUCUUCCCGCUGCUGCCCCAGUACAGCAAGUUGCGGACCCUCCUGCUGCGCGACAACAACAUGGGCUUCUACCGGGACCUGUACAACACCUCGUCGCCGAGGGAGAUGGUGGCCCAGUUCCUCCUCGUGGACGGCAACGUGACCAACAUCACCACCGUCAGCCUCUGGGAAGAAUUCUCCUCCAGCGACCUCGCAGAUCUCCGCUUCCUGGACAUGAGCCAGAACCAGUUCCAGUACCUGCCAGACGGCUUCCUGAGGAAAAUGCCUUCCCUCUCCCACCUGAACCUCCACCAGAAUUGCCUGAUGACGCUUCACAUUCGGGAGCACGAGCCCCCCGGAGCGCUCACCGAGCUGGm6ACCUGAGCCACAACCAGCUGUCGGAGCUGCACCUGGCUCCGGGGCUGGCCAGCUGCCUGGGCAGCCUGCGCUUGUUCAACCUGAGCUCCAACCAGCUCCUGGGCGUCCCCCCUGGCCUCUUCGCCAAUGCUAGGAACAUCACUACACUUGACAUGAGCCACAAUCAGAUCUCACUUUGUCCCCUGCCAGCUGCCUCGGm6ACCGGGUGGGCCCCCCUAGCUGUGUGGAUUUCAGGAAUAUGGCAUCUUUAAGGAGCCUGUCUCUGGAGGGCUGUGGCCUGGGGGCAUUGCCAGm6ACUGCCCAUUCCAAGGGm6ACCUCCCUGACCUACUUAGACCUCUCAAGCAACUGGGGGGUUCUGAAUGGGAGCCUCGCCCCACUCCAGGAUGUUGCCCCCAUGUUACAGGUCCUGUCUCUCAGGAACAUGGGCCUCCACUCCAGCUUUAUGGCGUUGGm6ACUUCUCUGGGUUUGGGAAUCUCAGGGm6ACUUAGAUCUGUCGGGGAAUUGCUUGACCACCUUCCCAAGGUUUGGGGGCAGCCUGGCCCUGGAGACCCUGGAUCUCCGUAGAAACUCGCUCACAGCCCUUCCCCAGAAGGCUGUGUCUGAGCAGCUCUCGAGAGGUCUGCGGACCAUCUACCUCAGUCAGAAUCCAUAUGm6ACUGCUGUGGGGUGGAUGGCUGGGGGGCCCUGCAGCAUGGGCAGACGGUGGCCGACUGGGCCAUGGUCACCUGCAACCUCUCCUCCAAGAUCAUCCGCGUGACGGAGCUGCCCGGAGGUGUGCCUCGGGm6ACUGCAAGUGGGAGCGGCUGGACCUGGGCCUGCUCUACCUCGUGCUCAUCCUCCCCAGCUGCCUCACCCUGCUGGUGGCCUGCACUGUCAUCGUCCUCACUUUUAAGAAGCCUCUGCUUCAGGUCAUCAAGAGCCGCUGCCACUGGUCCUCCGUUUACUGACCUGGCUGUGUGCCAAGACUCGAAAUUCGGUCCGCACACAACAGGm6ACACUUUCUCUGCCAGCUUUCAAGAUGUGAUGCAGAGGCCAAGUCUGACGAAUUGAAGUUUCAAUUAAAAUUUAAUAUGUUUCCAUUCCUCAUCGCCCACCCCACCCCCGCCCCCACCACCGCCCAAGUUCUUUUUCCAUCAUUAUAAUUCAUCCUCAUUAUCUUGGUAAAAUAUUUAUUAAGUGACUUUUUCAGAAAUAAAAGGCAACGUGUCUCAUAAAUAUUUUUUAAAUUAAA
Sequence (MODOMICS CODE ENCODING) GAGUCGCCGAGCAGCCCGCUCUCCAUGUGACUUCAGUUUCCGUCCGUUCCUUCCGCUGGUGCUAAAAUAAUCUGAUGCCCCACAGCAAGGAGGUAGCCCAGCCCCGCGUUCGGCUGCUCUCGAGGAGGCCGGAGCCCCCGGAGACGAUGCGCCCCGCGCAGCCGCCUGCGCCUGCGGGAGCCGGCUGCCCUUGAGAUGGAGUUGCUGCCUCUUUGGCUCUGCCUGGGUUUUCACUUCCUGACCGUGGGCUGGAGGAACAGAAGCGGAACAGCCACAGCAGCCUCCCAAGGAGUCUGCAAGUUGGUGGGUGGAGCCGCUGACUGCCGAGGGCAGAGCCUCGCUUCGGUGCCCAGCAGCCUCCCGCCCCACGCCCGGAUGCUCACCCUGGAUGCCAACCCUCUCAAGACCCUGUGGAAUCACUCCCUCCAGCCUUACCCUCUCCUGGAGAGCCUCAGCCUGCACAGCUGCCACCUGGAGCGCAUCAGCCGCGGCGCCUUCCAGGAGCAAGGUCACCUGCGCAGCCUGGUCCUGGGGGACAACUGCCUCUCAGAGAACUACGAAGAGACGGCAGCCGCCCUCCACGCCCUGCCGGGCCUGCGGAGGCUGGACUUGUCAGGAAACGCCCUGACGGAGGACAUGGCAGCCCUCAUGCUCCAGAACCUCUCCUCGCUGCGGUCCGUGUCCCUGGCGGGGAACACCAUCAUGCGGCUGGACGACUCCGUCUUCGAGGGCCUGGAGCGUCUCCGGGAGCUGGAUCUGCAGAGGAACUACAUCUUCGAGAUCGAGGGCGGCGCUUUCGACGGCCUGGCUGAGCUGAGGCACCUCAACCUGGCCUUCAACAACCUCCCCUGCAUCGUGG2000000006ACUUCGGGCUCACGCGGCUGCGGGUCCUCAACGUCAGCUACAACGUCCUGGAGUGGUUCCUCGCGACCGGGGGAGAGGCUGCCUUCGAGCUGGAGACGCUGGACCUGUCUCACAACCAGCUGCUGUUCUUCCCGCUGCUGCCCCAGUACAGCAAGUUGCGGACCCUCCUGCUGCGCGACAACAACAUGGGCUUCUACCGGGACCUGUACAACACCUCGUCGCCGAGGGAGAUGGUGGCCCAGUUCCUCCUCGUGGACGGCAACGUGACCAACAUCACCACCGUCAGCCUCUGGGAAGAAUUCUCCUCCAGCGACCUCGCAGAUCUCCGCUUCCUGGACAUGAGCCAGAACCAGUUCCAGUACCUGCCAGACGGCUUCCUGAGGAAAAUGCCUUCCCUCUCCCACCUGAACCUCCACCAGAAUUGCCUGAUGACGCUUCACAUUCGGGAGCACGAGCCCCCCGGAGCGCUCACCGAGCUGG2000000006ACCUGAGCCACAACCAGCUGUCGGAGCUGCACCUGGCUCCGGGGCUGGCCAGCUGCCUGGGCAGCCUGCGCUUGUUCAACCUGAGCUCCAACCAGCUCCUGGGCGUCCCCCCUGGCCUCUUCGCCAAUGCUAGGAACAUCACUACACUUGACAUGAGCCACAAUCAGAUCUCACUUUGUCCCCUGCCAGCUGCCUCGG2000000006ACCGGGUGGGCCCCCCUAGCUGUGUGGAUUUCAGGAAUAUGGCAUCUUUAAGGAGCCUGUCUCUGGAGGGCUGUGGCCUGGGGGCAUUGCCAG2000000006ACUGCCCAUUCCAAGGG2000000006ACCUCCCUGACCUACUUAGACCUCUCAAGCAACUGGGGGGUUCUGAAUGGGAGCCUCGCCCCACUCCAGGAUGUUGCCCCCAUGUUACAGGUCCUGUCUCUCAGGAACAUGGGCCUCCACUCCAGCUUUAUGGCGUUGG2000000006ACUUCUCUGGGUUUGGGAAUCUCAGGG2000000006ACUUAGAUCUGUCGGGGAAUUGCUUGACCACCUUCCCAAGGUUUGGGGGCAGCCUGGCCCUGGAGACCCUGGAUCUCCGUAGAAACUCGCUCACAGCCCUUCCCCAGAAGGCUGUGUCUGAGCAGCUCUCGAGAGGUCUGCGGACCAUCUACCUCAGUCAGAAUCCAUAUG2000000006ACUGCUGUGGGGUGGAUGGCUGGGGGGCCCUGCAGCAUGGGCAGACGGUGGCCGACUGGGCCAUGGUCACCUGCAACCUCUCCUCCAAGAUCAUCCGCGUGACGGAGCUGCCCGGAGGUGUGCCUCGGG2000000006ACUGCAAGUGGGAGCGGCUGGACCUGGGCCUGCUCUACCUCGUGCUCAUCCUCCCCAGCUGCCUCACCCUGCUGGUGGCCUGCACUGUCAUCGUCCUCACUUUUAAGAAGCCUCUGCUUCAGGUCAUCAAGAGCCGCUGCCACUGGUCCUCCGUUUACUGACCUGGCUGUGUGCCAAGACUCGAAAUUCGGUCCGCACACAACAGG2000000006ACACUUUCUCUGCCAGCUUUCAAGAUGUGAUGCAGAGGCCAAGUCUGACGAAUUGAAGUUUCAAUUAAAAUUUAAUAUGUUUCCAUUCCUCAUCGCCCACCCCACCCCCGCCCCCACCACCGCCCAAGUUCUUUUUCCAUCAUUAUAAUUCAUCCUCAUUAUCUUGGUAAAAUAUUUAUUAAGUGACUUUUUCAGAAAUAAAAGGCAACGUGUCUCAUAAAUAUUUUUUAAAUUAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 860 1340 1538 1631 1648 1787 1814 1985 2114 2320
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 3:196660308:+ 3:196660788:+ 3:196660986:+ 3:196661079:+ 3:196661096:+ 3:196661235:+ 3:196661262:+ 3:196661433:+ 3:196661562:+ 3:196661768:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
KTLz8piFYdwC
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
aHkqKEJkRYyb
Mg9GixDBFQAT
VyCX26p5UBRL
8cMbzB4aD5Se
gBgcfFQ5WN9C
Mg9GixDBFQAT
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
aHkqKEJkRYyb
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT