General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000325404
Gene ID:	ENSG00000181449
Gene Name:	SOX2
Sequence (UNICHARACTER ENCODING)	GAUGGUUGUCUAUUAACUUGUUCAAAAAAGUAUCAGGAGUUGUCAAGGCAGAGAAGAGAGUGUUUGCAAAAGGGGGAAAGUAGUUUGCUGCCUCUUUAAGACUAGGACUGAGAGAAAGAAGAGGAGAGAGAAAGAAAGGGAGAGAAGUUUGAGCCCCAGGCUUAAGCCUUUCCAAAAAAUAAUAAUAACAAUCAUCGGCGGCGGCAGGAUCGGCCAGAGGAGGAGGGAAGCGCUUUUUUUGAUCCUGAUUCCAGUUUGCCUCUCUCUUUUUUUCCCCCAAAUUAUUCUUCGCCUGAUUUUCCUCGCGGAGCCCUGCGCUCCCGACACCCCCGCCCGCCUCCCCUCCUCCUCUCCCCCCGCCCGCGGGCCCCCCAAAGUCCCGGCCGGGCCGAGGGUCGGCGGCCGCCGGCGGGCCGGGCCCGCGCACAGCGCCCGCAUGUACAACAUGAUGGAGACGGAGCUGAAGCCGCCGGGCCCGCAGCAAACUUCGGGGGGCGGCGGCGGCAACUCCACCGCGGCGGCGGCCGGCGGCAACCAGAAAAACAGCCCGGACCGCGUCAAGCGGCCCAUGAAUGCCUUCAUGGUGUGGUCCCGCGGGCAGCGGCGCAAGAUGGCCCAGGAGAACCCCAAGAUGCACAACUCGGAGAUCAGCAAGCGCCUGGGCGCCGAGUGGAAACUUUUGUCGGAGACGGAGAAGCGGCCGUUCAUCGACGAGGCUAAGCGGCUGCGAGCGCUGCACAUGAAGGAGCACCCGGAUUAUAAAUACCGGCCCCGGCGGAAAACCAAGACGCUCAUGAAGAAGGAUAAGUACACGCUGCCCGGCGGGCUGCUGGCCCCCGGCGGCAAUAGCAUGGCGAGCGGGGUCGGGGUGGGCGCCGGCCUGGGCGCGGGCGUGAACCAGCGCAUGGЖCAGUUACGCGCACAUGAACGGCUGGAGCAACGGCAGCUACAGCAUGAUGCAGGACCAGCUGGGCUACCCGCAGCACCCGGGCCUCAAUGCGCACGGCGCAGCGCAGAUGCAGCCCAUGCACCGCUACGACGUGAGCGCCCUGCAGUACAACUCCAUGACCAGCUCGCAGACCUACAUGAACGGCUCGCCCACCUACAGCAUGUCCUACUCGCAGCAGGGCACCCCUGGCAUGGCUCUUGGCUCCAUGGGUUCGGUGGUCAAGUCCGAGGCCAGCUCCAGCCCCCCUGUGGUUACCUCUUCCUCCCACUCCAGGGCGCCCUGCCAGGCCGGGGACCUCCGGGЖCAUGAUCAGCAUGUAUCUCCCCGGCGCCGAGGUGCCGGAACCCGCCGCCCCCAGCAGЖCUUCACAUGUCCCAGCACUACCAGAGCGGCCCGGUGCCCGGCACGGCCAUUAACGGCACACUGCCCCUCUCACACAUGUGAGGGCCGGACAGCGAACUGGAGGGGGGAGAAAUUUUCAAAGAAAAACGAGGGAAAUGGGAGGGGUGCAAAAGAGGAGAGUAAGAAACAGCAUGGAGAAAACCCGGUACGCUCAAAAAGAAAAAGGAAAAAAAAAAAUCCCAUCACCCACAGCAAAUGACAGCUGCAAAAGAGAACACCAAUCCCAPCCACACUCACGCAAAAACCGCGAUGCCGACAAGAAAACUUUUAUGAGAGAGAUCCUGGЖCUUCUUUUUGGGGGACUAUUUUUGUACAGAGAAAACCUGGGGAGGGUGGGGAGGGCGGGGGAAUGGACCUUGUAUAGAUCUGGAGGAAAGAAAGCUACGAAAAACUUUUUAAAAGUUCUAGUGGUACGGUAGGAGCUUUGCAGGAAGUUUGCAAAAGUCUPUACCAAUAAUAUUUAGAGCUAGUCUCCAAGCGACGAAAAAAAUGUUUUAAUAUUUGCAAGCAACUUUUGUACAGUAUUUAUCGAGAUAAACAUGGCAAUCAAAAUGUCCAUUGUUUAUAAGCUGAGAAUUUGCCAAUAUUUUUCAAGGAGAGGCUUCUUGCUGAAUUUUGAUUCUGCAGCUGAAAUUUAGGACAGUUGCAAACGUGAAAAGAAGAAAAUUAUUCAAAUUUGGЖCAUUUUAAUUGUUUAAAAAUUGUACAAAAGGAAAAAAUUAGAAUAAGUACUGGCGAACCAUCUCUGUGGUCUUGUUUAAAAAGGGCAAAAGUUUUAGACUGUACUAAAUUUUAUAЖCUUACUGUUAAAAGCAAAAAUGGCCAUGCAGGUUGACACCGUUGGUAAUUUAUAAUAGCUUUUGUUCGAUCCCAACUUUCCAUUUUGUUCAGAUAAAAAAAACCAUGAAAUUACUGUGUUUGAAAUAUUUUCUUAUGGUUUGUAAUAUUUCUGUAAAUUUAUUGUGAUAUUUUAAGGUUUUCCCCCCUPUAUUUUCCGUAGUUGUAUUUUAAAAGAUUCGGCUCUGUAUUAUUUGAAUCAGUCUGCCGAGAAUCCAUGUAUAUAUUUGAACUAAUAUCAPCCUUAUAACAGGUACAUUUUCAACUUAAGUUUUUACUCCAUUAUGCACAGUUUGAGAUAAAUAAAUUUUUGAAAUAUGGACACUGAAA
Sequence (SHORT NAMES ENCODING)	GAUGGUUGUCUAUUAACUUGUUCAAAAAAGUAUCAGGAGUUGUCAAGGCAGAGAAGAGAGUGUUUGCAAAAGGGGGAAAGUAGUUUGCUGCCUCUUUAAGACUAGGACUGAGAGAAAGAAGAGGAGAGAGAAAGAAAGGGAGAGAAGUUUGAGCCCCAGGCUUAAGCCUUUCCAAAAAAUAAUAAUAACAAUCAUCGGCGGCGGCAGGAUCGGCCAGAGGAGGAGGGAAGCGCUUUUUUUGAUCCUGAUUCCAGUUUGCCUCUCUCUUUUUUUCCCCCAAAUUAUUCUUCGCCUGAUUUUCCUCGCGGAGCCCUGCGCUCCCGACACCCCCGCCCGCCUCCCCUCCUCCUCUCCCCCCGCCCGCGGGCCCCCCAAAGUCCCGGCCGGGCCGAGGGUCGGCGGCCGCCGGCGGGCCGGGCCCGCGCACAGCGCCCGCAUGUACAACAUGAUGGAGACGGAGCUGAAGCCGCCGGGCCCGCAGCAAACUUCGGGGGGCGGCGGCGGCAACUCCACCGCGGCGGCGGCCGGCGGCAACCAGAAAAACAGCCCGGACCGCGUCAAGCGGCCCAUGAAUGCCUUCAUGGUGUGGUCCCGCGGGCAGCGGCGCAAGAUGGCCCAGGAGAACCCCAAGAUGCACAACUCGGAGAUCAGCAAGCGCCUGGGCGCCGAGUGGAAACUUUUGUCGGAGACGGAGAAGCGGCCGUUCAUCGACGAGGCUAAGCGGCUGCGAGCGCUGCACAUGAAGGAGCACCCGGAUUAUAAAUACCGGCCCCGGCGGAAAACCAAGACGCUCAUGAAGAAGGAUAAGUACACGCUGCCCGGCGGGCUGCUGGCCCCCGGCGGCAAUAGCAUGGCGAGCGGGGUCGGGGUGGGCGCCGGCCUGGGCGCGGGCGUGAACCAGCGCAUGGm6ACAGUUACGCGCACAUGAACGGCUGGAGCAACGGCAGCUACAGCAUGAUGCAGGACCAGCUGGGCUACCCGCAGCACCCGGGCCUCAAUGCGCACGGCGCAGCGCAGAUGCAGCCCAUGCACCGCUACGACGUGAGCGCCCUGCAGUACAACUCCAUGACCAGCUCGCAGACCUACAUGAACGGCUCGCCCACCUACAGCAUGUCCUACUCGCAGCAGGGCACCCCUGGCAUGGCUCUUGGCUCCAUGGGUUCGGUGGUCAAGUCCGAGGCCAGCUCCAGCCCCCCUGUGGUUACCUCUUCCUCCCACUCCAGGGCGCCCUGCCAGGCCGGGGACCUCCGGGm6ACAUGAUCAGCAUGUAUCUCCCCGGCGCCGAGGUGCCGGAACCCGCCGCCCCCAGCAGm6ACUUCACAUGUCCCAGCACUACCAGAGCGGCCCGGUGCCCGGCACGGCCAUUAACGGCACACUGCCCCUCUCACACAUGUGAGGGCCGGACAGCGAACUGGAGGGGGGAGAAAUUUUCAAAGAAAAACGAGGGAAAUGGGAGGGGUGCAAAAGAGGAGAGUAAGAAACAGCAUGGAGAAAACCCGGUACGCUCAAAAAGAAAAAGGAAAAAAAAAAAUCCCAUCACCCACAGCAAAUGACAGCUGCAAAAGAGAACACCAAUCCCAYCCACACUCACGCAAAAACCGCGAUGCCGACAAGAAAACUUUUAUGAGAGAGAUCCUGGm6ACUUCUUUUUGGGGGACUAUUUUUGUACAGAGAAAACCUGGGGAGGGUGGGGAGGGCGGGGGAAUGGACCUUGUAUAGAUCUGGAGGAAAGAAAGCUACGAAAAACUUUUUAAAAGUUCUAGUGGUACGGUAGGAGCUUUGCAGGAAGUUUGCAAAAGUCUYUACCAAUAAUAUUUAGAGCUAGUCUCCAAGCGACGAAAAAAAUGUUUUAAUAUUUGCAAGCAACUUUUGUACAGUAUUUAUCGAGAUAAACAUGGCAAUCAAAAUGUCCAUUGUUUAUAAGCUGAGAAUUUGCCAAUAUUUUUCAAGGAGAGGCUUCUUGCUGAAUUUUGAUUCUGCAGCUGAAAUUUAGGACAGUUGCAAACGUGAAAAGAAGAAAAUUAUUCAAAUUUGGm6ACAUUUUAAUUGUUUAAAAAUUGUACAAAAGGAAAAAAUUAGAAUAAGUACUGGCGAACCAUCUCUGUGGUCUUGUUUAAAAAGGGCAAAAGUUUUAGACUGUACUAAAUUUUAUAm6ACUUACUGUUAAAAGCAAAAAUGGCCAUGCAGGUUGACACCGUUGGUAAUUUAUAAUAGCUUUUGUUCGAUCCCAACUUUCCAUUUUGUUCAGAUAAAAAAAACCAUGAAAUUACUGUGUUUGAAAUAUUUUCUUAUGGUUUGUAAUAUUUCUGUAAAUUUAUUGUGAUAUUUUAAGGUUUUCCCCCCUYUAUUUUCCGUAGUUGUAUUUUAAAAGAUUCGGCUCUGUAUUAUUUGAAUCAGUCUGCCGAGAAUCCAUGUAUAUAUUUGAACUAAUAUCAYCCUUAUAACAGGUACAUUUUCAACUUAAGUUUUUACUCCAUUAUGCACAGUUUGAGAUAAAUAAAUUUUUGAAAUAUGGACACUGAAA
Sequence (MODOMICS CODE ENCODING)	GAUGGUUGUCUAUUAACUUGUUCAAAAAAGUAUCAGGAGUUGUCAAGGCAGAGAAGAGAGUGUUUGCAAAAGGGGGAAAGUAGUUUGCUGCCUCUUUAAGACUAGGACUGAGAGAAAGAAGAGGAGAGAGAAAGAAAGGGAGAGAAGUUUGAGCCCCAGGCUUAAGCCUUUCCAAAAAAUAAUAAUAACAAUCAUCGGCGGCGGCAGGAUCGGCCAGAGGAGGAGGGAAGCGCUUUUUUUGAUCCUGAUUCCAGUUUGCCUCUCUCUUUUUUUCCCCCAAAUUAUUCUUCGCCUGAUUUUCCUCGCGGAGCCCUGCGCUCCCGACACCCCCGCCCGCCUCCCCUCCUCCUCUCCCCCCGCCCGCGGGCCCCCCAAAGUCCCGGCCGGGCCGAGGGUCGGCGGCCGCCGGCGGGCCGGGCCCGCGCACAGCGCCCGCAUGUACAACAUGAUGGAGACGGAGCUGAAGCCGCCGGGCCCGCAGCAAACUUCGGGGGGCGGCGGCGGCAACUCCACCGCGGCGGCGGCCGGCGGCAACCAGAAAAACAGCCCGGACCGCGUCAAGCGGCCCAUGAAUGCCUUCAUGGUGUGGUCCCGCGGGCAGCGGCGCAAGAUGGCCCAGGAGAACCCCAAGAUGCACAACUCGGAGAUCAGCAAGCGCCUGGGCGCCGAGUGGAAACUUUUGUCGGAGACGGAGAAGCGGCCGUUCAUCGACGAGGCUAAGCGGCUGCGAGCGCUGCACAUGAAGGAGCACCCGGAUUAUAAAUACCGGCCCCGGCGGAAAACCAAGACGCUCAUGAAGAAGGAUAAGUACACGCUGCCCGGCGGGCUGCUGGCCCCCGGCGGCAAUAGCAUGGCGAGCGGGGUCGGGGUGGGCGCCGGCCUGGGCGCGGGCGUGAACCAGCGCAUGG2000000006ACAGUUACGCGCACAUGAACGGCUGGAGCAACGGCAGCUACAGCAUGAUGCAGGACCAGCUGGGCUACCCGCAGCACCCGGGCCUCAAUGCGCACGGCGCAGCGCAGAUGCAGCCCAUGCACCGCUACGACGUGAGCGCCCUGCAGUACAACUCCAUGACCAGCUCGCAGACCUACAUGAACGGCUCGCCCACCUACAGCAUGUCCUACUCGCAGCAGGGCACCCCUGGCAUGGCUCUUGGCUCCAUGGGUUCGGUGGUCAAGUCCGAGGCCAGCUCCAGCCCCCCUGUGGUUACCUCUUCCUCCCACUCCAGGGCGCCCUGCCAGGCCGGGGACCUCCGGG2000000006ACAUGAUCAGCAUGUAUCUCCCCGGCGCCGAGGUGCCGGAACCCGCCGCCCCCAGCAG2000000006ACUUCACAUGUCCCAGCACUACCAGAGCGGCCCGGUGCCCGGCACGGCCAUUAACGGCACACUGCCCCUCUCACACAUGUGAGGGCCGGACAGCGAACUGGAGGGGGGAGAAAUUUUCAAAGAAAAACGAGGGAAAUGGGAGGGGUGCAAAAGAGGAGAGUAAGAAACAGCAUGGAGAAAACCCGGUACGCUCAAAAAGAAAAAGGAAAAAAAAAAAUCCCAUCACCCACAGCAAAUGACAGCUGCAAAAGAGAACACCAAUCCCA2000000009UCCACACUCACGCAAAAACCGCGAUGCCGACAAGAAAACUUUUAUGAGAGAGAUCCUGG2000000006ACUUCUUUUUGGGGGACUAUUUUUGUACAGAGAAAACCUGGGGAGGGUGGGGAGGGCGGGGGAAUGGACCUUGUAUAGAUCUGGAGGAAAGAAAGCUACGAAAAACUUUUUAAAAGUUCUAGUGGUACGGUAGGAGCUUUGCAGGAAGUUUGCAAAAGUCU2000000009UUACCAAUAAUAUUUAGAGCUAGUCUCCAAGCGACGAAAAAAAUGUUUUAAUAUUUGCAAGCAACUUUUGUACAGUAUUUAUCGAGAUAAACAUGGCAAUCAAAAUGUCCAUUGUUUAUAAGCUGAGAAUUUGCCAAUAUUUUUCAAGGAGAGGCUUCUUGCUGAAUUUUGAUUCUGCAGCUGAAAUUUAGGACAGUUGCAAACGUGAAAAGAAGAAAAUUAUUCAAAUUUGG2000000006ACAUUUUAAUUGUUUAAAAAUUGUACAAAAGGAAAAAAUUAGAAUAAGUACUGGCGAACCAUCUCUGUGGUCUUGUUUAAAAAGGGCAAAAGUUUUAGACUGUACUAAAUUUUAUA2000000006ACUUACUGUUAAAAGCAAAAAUGGCCAUGCAGGUUGACACCGUUGGUAAUUUAUAAUAGCUUUUGUUCGAUCCCAACUUUCCAUUUUGUUCAGAUAAAAAAAACCAUGAAAUUACUGUGUUUGAAAUAUUUUCUUAUGGUUUGUAAUAUUUCUGUAAAUUUAUUGUGAUAUUUUAAGGUUUUCCCCCCU2000000009UUAUUUUCCGUAGUUGUAUUUUAAAAGAUUCGGCUCUGUAUUAUUUGAAUCAGUCUGCCGAGAAUCCAUGUAUAUAUUUGAACUAAUAUCA2000000009UCCUUAUAACAGGUACAUUUUCAACUUAAGUUUUUACUCCAUUAUGCACAGUUUGAGAUAAAUAAAUUUUUGAAAUAUGGACACUGAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	909	1251	1309	1575	1634	1795	2028	2144	2333	2424
Modification Positions	m6A	m6A	m6A	Y	m6A	Y	m6A	m6A	Y	Y
Genomic Coordinates	3:181712833:+	3:181713175:+	3:181713233:+	3:181713499:+	3:181713558:+	3:181713719:+	3:181713952:+	3:181714068:+	3:181714257:+	3:181714348:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL eGNFqdoGxzRm	aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL eGNFqdoGxzRm	5Nnepx5V7yHo msuJfBpJvM5H VyCX26p5UBRL eGNFqdoGxzRm	BtsJQJ3DteUq eGNFqdoGxzRm	msuJfBpJvM5H VyCX26p5UBRL	BtsJQJ3DteUq eGNFqdoGxzRm	BtsJQJ3DteUq eGNFqdoGxzRm kx7BHU7ZycYE Yfn77uLS5tv8	BtsJQJ3DteUq eGNFqdoGxzRm kx7BHU7ZycYE	BtsJQJ3DteUq eGNFqdoGxzRm kx7BHU7ZycYE S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq eGNFqdoGxzRm kx7BHU7ZycYE S9vNeQQYrhac Yfn77uLS5tv8