General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000504689
Gene ID:	ENSG00000004399
Gene Name:	PLXND1
Sequence (UNICHARACTER ENCODING)	GAUUCGCCAACCAACAAGCUCCUCUACGCCAAGGAGAUUCCUGAGUACCGGAAGAUCGUGCAGCGCUACUACAAGCAGAUCCAGGACAUGACGCCGCUCAGCGAGCAAGAGAUGAAUGCCCAUCUGGCCGAGGAGUCGAGGAAAUACCAGAAUGAGUUCAACACCAAUGUGGCCAUGGCAGAGAUUUAUAAGUACGCCAAGAGGUAUCGGCCGCAGCUUUUAUAUAUUAAAAAACGUAUCAUGCACCAACUGUGAAUAGCUGCCGCUUGCGCAGAGGACCCGGGGAGGGGUCCCGAGAGGCUCCCCAUGCAACACUGGAAAUGЖCUGUUCCAGAGAGCGGGCAGЖCCUGGCAGAGCGCCCCUGGCGCCUGAGACUACCACCCACUCCGUUCCUGCCAGAAACGACCCUCUGUGGCCGAUGGGCCAUGCGGGCCCCUCGCAGCCAACUCAGCCAGUGUUGGGACUGGCUCAGAGCCCAUGGGGGCUGGAGGGGGGCAGCUGGGACUCUGGAAUCUUCUPUAUAAUAAAAGCCUUACGGACAAACCUA
Sequence (SHORT NAMES ENCODING)	GAUUCGCCAACCAACAAGCUCCUCUACGCCAAGGAGAUUCCUGAGUACCGGAAGAUCGUGCAGCGCUACUACAAGCAGAUCCAGGACAUGACGCCGCUCAGCGAGCAAGAGAUGAAUGCCCAUCUGGCCGAGGAGUCGAGGAAAUACCAGAAUGAGUUCAACACCAAUGUGGCCAUGGCAGAGAUUUAUAAGUACGCCAAGAGGUAUCGGCCGCAGCUUUUAUAUAUUAAAAAACGUAUCAUGCACCAACUGUGAAUAGCUGCCGCUUGCGCAGAGGACCCGGGGAGGGGUCCCGAGAGGCUCCCCAUGCAACACUGGAAAUGm6ACUGUUCCAGAGAGCGGGCAGm6ACCUGGCAGAGCGCCCCUGGCGCCUGAGACUACCACCCACUCCGUUCCUGCCAGAAACGACCCUCUGUGGCCGAUGGGCCAUGCGGGCCCCUCGCAGCCAACUCAGCCAGUGUUGGGACUGGCUCAGAGCCCAUGGGGGCUGGAGGGGGGCAGCUGGGACUCUGGAAUCUUCUYUAUAAUAAAAGCCUUACGGACAAACCUA
Sequence (MODOMICS CODE ENCODING)	GAUUCGCCAACCAACAAGCUCCUCUACGCCAAGGAGAUUCCUGAGUACCGGAAGAUCGUGCAGCGCUACUACAAGCAGAUCCAGGACAUGACGCCGCUCAGCGAGCAAGAGAUGAAUGCCCAUCUGGCCGAGGAGUCGAGGAAAUACCAGAAUGAGUUCAACACCAAUGUGGCCAUGGCAGAGAUUUAUAAGUACGCCAAGAGGUAUCGGCCGCAGCUUUUAUAUAUUAAAAAACGUAUCAUGCACCAACUGUGAAUAGCUGCCGCUUGCGCAGAGGACCCGGGGAGGGGUCCCGAGAGGCUCCCCAUGCAACACUGGAAAUG2000000006ACUGUUCCAGAGAGCGGGCAG2000000006ACCUGGCAGAGCGCCCCUGGCGCCUGAGACUACCACCCACUCCGUUCCUGCCAGAAACGACCCUCUGUGGCCGAUGGGCCAUGCGGGCCCCUCGCAGCCAACUCAGCCAGUGUUGGGACUGGCUCAGAGCCCAUGGGGGCUGGAGGGGGGCAGCUGGGACUCUGGAAUCUUCU2000000009UUAUAAUAAAAGCCUUACGGACAAACCUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	324	345	518
Modification Positions	m6A	m6A	Y
Genomic Coordinates	3:129555436:-	3:129555415:-	3:129555242:-
Level of Experimental Evidence	3	3	3
Level of Experimental Reliability	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB dknfVe6BK8aP kx7BHU7ZycYE	8cMbzB4aD5Se ArijeGVTwYBw dknfVe6BK8aP kx7BHU7ZycYE	dknfVe6BK8aP kx7BHU7ZycYE