General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000296255
Gene ID:	ENSG00000163902
Gene Name:	RPN1
Sequence (UNICHARACTER ENCODING)	GCACUGCUCUUCCCGGUCAUGGAGGCGCCAGCCGCCGGCUUGUUUCUGCUCCUGUUGCUUGGGACUUGGGCCCCGGCGCCGGGCAGCGCCPCCUCCGAGGCACCGCCGCUGAUCAAUGAGGACGUGAAGCGCACAGUGGACCUAAGCAGCCACCUGGCUAAGGUGACGGCCGAGGUGGUCCUGGCGCACCUGGGCGGCGGCUCCACGUCCCGAGCUACCUCUUUCCUGCUGGCUUUGGAGCCUGAGCUCGAGGCCCGGCUGGCGCACCUGGGCGUGCAGGUAAAGGGAGAAGAUGAGGAAGAGAACAAUUUGGAAGUACGUGAAACCAAAAUUAAGGGUAAAAGUGGGAGAUUCUUCACAGUCAAGCUCCCAGUUGCUCUUGAUCCUGGGGCCAAGAUUUCAGUCAUUGUGGAAACAGUCUACACCCAUGUGCUUCAPCCGUAUCCAACCCAGAUCACCCAGUCAGAGAAACAGUUUGUGGUGUUUGAGGGGAACCAUUAUUUCUACUCUCCCUAUCCAACGAAGЖCACAAACCAUGCGUGUGAAGCUUGCCUCUCGAAAUGUGGAGAGCUACACCAAGCUGGGGAЖCCCCACGCGCUCUGAGGACCUACUGGAUUAUGGGCCUUUCAGAGAUGUGCCUGCCUAUAGUCAGGAUACUUUUAAAGUACЖUUAUGAGAACAACAGCCCUUUCCUGACCAUCACCAGCAUGACCCGAGUCAUUGAAGUCUCUCACUGGGGUAAUAUUGCUGUGGAAGAAAAUGUGGACUUAAAGCACACAGGAGCUGUGCUUAAGGGGCCUUUCUCACGCUAUGAUUACCAGAGACAGCCAGAUAGUGGAAUAUCCUCCAPCCGUUCUUUUAAGACCAPCCUUCCUGCUGCUGCCCAGGAUGUUUAUUACCGGGAUGAGAUUGGCAAUGUUUCUACCAGCCACCUCCUUAUUUUGGAUGACUCUGUAGAGAUGGAAAUCCGGCCUCGCUUCCCUCUCUUUGGCGGGUGGAAGACCCAUUACЖUCGUUGGCUACAACCUCCCAAGCUAUGAGUACCUCUAUAAUUUGGGUGACCAGUAUGCACUGAAGAUGAGGUUUGUGGACCAUGUGUUUGAUGAACAAGUGAUAGAUUCUCUGACUGUGAAGAUCAPCCUGCCUGAAGGAGCCAAGAACAUUGAAAUUGAUAGUCCCUAUGAAAUCAGCCGUGCCCCAGAUGAGCUGCACUACACCUAUCUGGACACAUUUGGCCGCCCUGUGAUUGUUGCCUACAAGAAAAAUCUGGUAGAACAGCACAUUCAGGACAUUGUGGUCCACUACACGUUCAACAAGGUGCUCAUGCUGCAGGAGCCCCUGCUGGUGGUGGCGGCCUUCUACAPCCUGUUCUUCACCGUUAUCAUCUAUGUUCGGCUGGACUUCUCCAUCACCAAGGAUCCAGCCGCAGAAGCCAGGAUGAAGGUAGCCUGCAUCACAGAGCAGGUCUUGACCCUGGUCAACAAGAGAAUAGGCCUPUACCGUCACUUUGACGAGЖCCGUCAAUAGGUACAAGCAAUCCCGGGACAUCUCCACCCUCAACAGUGGCAAGAAGAGCCUGGAGACUGAACACAAGGCCUUGACCAGUGAGAUUGCACUGCUGCAGUCCAGGCUGAAGACAGAGGGCUCUGAUCUGUGCGACAGAGUGAGCGAAAUGCAGAAGCUGGAUGCACAGGUCAAGGAGCUGGUGCUGAAGUCGGCGGUGGAGGCUGAGCGCCUGGUGGCUGGCAAGCUCAAGAAAGACACGUACAUUGAGAAUGAGAAGCUCAUCUCAGGAAAGCGCCAGGAGCUGGUCACCAAGAUCGACCACAPCCUGGAUGCCCUGUAGCCCCUGCCCGCAUCCPCCAGGGGGCCCAGGGUGCCUGCACUUUGCUGUGGCAGGCAGAUUGGGUGGUAGUGGGAGGUUGUGCAUGGAGGCCAGUGAAAGCUGACAUCUGUAAAAGGCCUUCAAGGAAGAGAAACCAGGCCCUGCGUCAGGCAGUGUGAGUUUGCCGUUUGUCCUUAЖCUUUCUUUUUUUUUUUUUUUAAAAAAAGAAAACUPUAAAAAAACUCCCAUUAAAAACAAAACAUCUUUGUGUUUUGAACAAAGGAAUUUUCAAUAUUUGAUUGGUAUUCUGUUCUGAAGUCUAAGAUAUUUUUCAGCCUAUAAAGCCCCCUGUUUUAUGCCCUUCUAAUUCUGAUGUUUGGGUAUUGUGUGAGUGCЖUGUGUUUUUUUUUUUUUUUUUAAAGCGUGUGUGAACAAAUGGAAAUAAAGCAGGGACUGUGAACAUUU
Sequence (SHORT NAMES ENCODING)	GCACUGCUCUUCCCGGUCAUGGAGGCGCCAGCCGCCGGCUUGUUUCUGCUCCUGUUGCUUGGGACUUGGGCCCCGGCGCCGGGCAGCGCCYCCUCCGAGGCACCGCCGCUGAUCAAUGAGGACGUGAAGCGCACAGUGGACCUAAGCAGCCACCUGGCUAAGGUGACGGCCGAGGUGGUCCUGGCGCACCUGGGCGGCGGCUCCACGUCCCGAGCUACCUCUUUCCUGCUGGCUUUGGAGCCUGAGCUCGAGGCCCGGCUGGCGCACCUGGGCGUGCAGGUAAAGGGAGAAGAUGAGGAAGAGAACAAUUUGGAAGUACGUGAAACCAAAAUUAAGGGUAAAAGUGGGAGAUUCUUCACAGUCAAGCUCCCAGUUGCUCUUGAUCCUGGGGCCAAGAUUUCAGUCAUUGUGGAAACAGUCUACACCCAUGUGCUUCAYCCGUAUCCAACCCAGAUCACCCAGUCAGAGAAACAGUUUGUGGUGUUUGAGGGGAACCAUUAUUUCUACUCUCCCUAUCCAACGAAGm6ACACAAACCAUGCGUGUGAAGCUUGCCUCUCGAAAUGUGGAGAGCUACACCAAGCUGGGGAm6ACCCCACGCGCUCUGAGGACCUACUGGAUUAUGGGCCUUUCAGAGAUGUGCCUGCCUAUAGUCAGGAUACUUUUAAAGUACm6AUUAUGAGAACAACAGCCCUUUCCUGACCAUCACCAGCAUGACCCGAGUCAUUGAAGUCUCUCACUGGGGUAAUAUUGCUGUGGAAGAAAAUGUGGACUUAAAGCACACAGGAGCUGUGCUUAAGGGGCCUUUCUCACGCUAUGAUUACCAGAGACAGCCAGAUAGUGGAAUAUCCUCCAYCCGUUCUUUUAAGACCAYCCUUCCUGCUGCUGCCCAGGAUGUUUAUUACCGGGAUGAGAUUGGCAAUGUUUCUACCAGCCACCUCCUUAUUUUGGAUGACUCUGUAGAGAUGGAAAUCCGGCCUCGCUUCCCUCUCUUUGGCGGGUGGAAGACCCAUUACm6AUCGUUGGCUACAACCUCCCAAGCUAUGAGUACCUCUAUAAUUUGGGUGACCAGUAUGCACUGAAGAUGAGGUUUGUGGACCAUGUGUUUGAUGAACAAGUGAUAGAUUCUCUGACUGUGAAGAUCAYCCUGCCUGAAGGAGCCAAGAACAUUGAAAUUGAUAGUCCCUAUGAAAUCAGCCGUGCCCCAGAUGAGCUGCACUACACCUAUCUGGACACAUUUGGCCGCCCUGUGAUUGUUGCCUACAAGAAAAAUCUGGUAGAACAGCACAUUCAGGACAUUGUGGUCCACUACACGUUCAACAAGGUGCUCAUGCUGCAGGAGCCCCUGCUGGUGGUGGCGGCCUUCUACAYCCUGUUCUUCACCGUUAUCAUCUAUGUUCGGCUGGACUUCUCCAUCACCAAGGAUCCAGCCGCAGAAGCCAGGAUGAAGGUAGCCUGCAUCACAGAGCAGGUCUUGACCCUGGUCAACAAGAGAAUAGGCCUYUACCGUCACUUUGACGAGm6ACCGUCAAUAGGUACAAGCAAUCCCGGGACAUCUCCACCCUCAACAGUGGCAAGAAGAGCCUGGAGACUGAACACAAGGCCUUGACCAGUGAGAUUGCACUGCUGCAGUCCAGGCUGAAGACAGAGGGCUCUGAUCUGUGCGACAGAGUGAGCGAAAUGCAGAAGCUGGAUGCACAGGUCAAGGAGCUGGUGCUGAAGUCGGCGGUGGAGGCUGAGCGCCUGGUGGCUGGCAAGCUCAAGAAAGACACGUACAUUGAGAAUGAGAAGCUCAUCUCAGGAAAGCGCCAGGAGCUGGUCACCAAGAUCGACCACAYCCUGGAUGCCCUGUAGCCCCUGCCCGCAUCCYCCAGGGGGCCCAGGGUGCCUGCACUUUGCUGUGGCAGGCAGAUUGGGUGGUAGUGGGAGGUUGUGCAUGGAGGCCAGUGAAAGCUGACAUCUGUAAAAGGCCUUCAAGGAAGAGAAACCAGGCCCUGCGUCAGGCAGUGUGAGUUUGCCGUUUGUCCUUAm6ACUUUCUUUUUUUUUUUUUUUAAAAAAAGAAAACUYUAAAAAAACUCCCAUUAAAAACAAAACAUCUUUGUGUUUUGAACAAAGGAAUUUUCAAUAUUUGAUUGGUAUUCUGUUCUGAAGUCUAAGAUAUUUUUCAGCCUAUAAAGCCCCCUGUUUUAUGCCCUUCUAAUUCUGAUGUUUGGGUAUUGUGUGAGUGCm6AUGUGUUUUUUUUUUUUUUUUUAAAGCGUGUGUGAACAAAUGGAAAUAAAGCAGGGACUGUGAACAUUU
Sequence (MODOMICS CODE ENCODING)	GCACUGCUCUUCCCGGUCAUGGAGGCGCCAGCCGCCGGCUUGUUUCUGCUCCUGUUGCUUGGGACUUGGGCCCCGGCGCCGGGCAGCGCC2000000009UCCUCCGAGGCACCGCCGCUGAUCAAUGAGGACGUGAAGCGCACAGUGGACCUAAGCAGCCACCUGGCUAAGGUGACGGCCGAGGUGGUCCUGGCGCACCUGGGCGGCGGCUCCACGUCCCGAGCUACCUCUUUCCUGCUGGCUUUGGAGCCUGAGCUCGAGGCCCGGCUGGCGCACCUGGGCGUGCAGGUAAAGGGAGAAGAUGAGGAAGAGAACAAUUUGGAAGUACGUGAAACCAAAAUUAAGGGUAAAAGUGGGAGAUUCUUCACAGUCAAGCUCCCAGUUGCUCUUGAUCCUGGGGCCAAGAUUUCAGUCAUUGUGGAAACAGUCUACACCCAUGUGCUUCA2000000009UCCGUAUCCAACCCAGAUCACCCAGUCAGAGAAACAGUUUGUGGUGUUUGAGGGGAACCAUUAUUUCUACUCUCCCUAUCCAACGAAG2000000006ACACAAACCAUGCGUGUGAAGCUUGCCUCUCGAAAUGUGGAGAGCUACACCAAGCUGGGGA2000000006ACCCCACGCGCUCUGAGGACCUACUGGAUUAUGGGCCUUUCAGAGAUGUGCCUGCCUAUAGUCAGGAUACUUUUAAAGUAC2000000006AUUAUGAGAACAACAGCCCUUUCCUGACCAUCACCAGCAUGACCCGAGUCAUUGAAGUCUCUCACUGGGGUAAUAUUGCUGUGGAAGAAAAUGUGGACUUAAAGCACACAGGAGCUGUGCUUAAGGGGCCUUUCUCACGCUAUGAUUACCAGAGACAGCCAGAUAGUGGAAUAUCCUCCA2000000009UCCGUUCUUUUAAGACCA2000000009UCCUUCCUGCUGCUGCCCAGGAUGUUUAUUACCGGGAUGAGAUUGGCAAUGUUUCUACCAGCCACCUCCUUAUUUUGGAUGACUCUGUAGAGAUGGAAAUCCGGCCUCGCUUCCCUCUCUUUGGCGGGUGGAAGACCCAUUAC2000000006AUCGUUGGCUACAACCUCCCAAGCUAUGAGUACCUCUAUAAUUUGGGUGACCAGUAUGCACUGAAGAUGAGGUUUGUGGACCAUGUGUUUGAUGAACAAGUGAUAGAUUCUCUGACUGUGAAGAUCA2000000009UCCUGCCUGAAGGAGCCAAGAACAUUGAAAUUGAUAGUCCCUAUGAAAUCAGCCGUGCCCCAGAUGAGCUGCACUACACCUAUCUGGACACAUUUGGCCGCCCUGUGAUUGUUGCCUACAAGAAAAAUCUGGUAGAACAGCACAUUCAGGACAUUGUGGUCCACUACACGUUCAACAAGGUGCUCAUGCUGCAGGAGCCCCUGCUGGUGGUGGCGGCCUUCUACA2000000009UCCUGUUCUUCACCGUUAUCAUCUAUGUUCGGCUGGACUUCUCCAUCACCAAGGAUCCAGCCGCAGAAGCCAGGAUGAAGGUAGCCUGCAUCACAGAGCAGGUCUUGACCCUGGUCAACAAGAGAAUAGGCCU2000000009UUACCGUCACUUUGACGAG2000000006ACCGUCAAUAGGUACAAGCAAUCCCGGGACAUCUCCACCCUCAACAGUGGCAAGAAGAGCCUGGAGACUGAACACAAGGCCUUGACCAGUGAGAUUGCACUGCUGCAGUCCAGGCUGAAGACAGAGGGCUCUGAUCUGUGCGACAGAGUGAGCGAAAUGCAGAAGCUGGAUGCACAGGUCAAGGAGCUGGUGCUGAAGUCGGCGGUGGAGGCUGAGCGCCUGGUGGCUGGCAAGCUCAAGAAAGACACGUACAUUGAGAAUGAGAAGCUCAUCUCAGGAAAGCGCCAGGAGCUGGUCACCAAGAUCGACCACA2000000009UCCUGGAUGCCCUGUAGCCCCUGCCCGCAUCC2000000009UCCAGGGGGCCCAGGGUGCCUGCACUUUGCUGUGGCAGGCAGAUUGGGUGGUAGUGGGAGGUUGUGCAUGGAGGCCAGUGAAAGCUGACAUCUGUAAAAGGCCUUCAAGGAAGAGAAACCAGGCCCUGCGUCAGGCAGUGUGAGUUUGCCGUUUGUCCUUA2000000006ACUUUCUUUUUUUUUUUUUUUAAAAAAAGAAAACU2000000009UUAAAAAAACUCCCAUUAAAAACAAAACAUCUUUGUGUUUUGAACAAAGGAAUUUUCAAUAUUUGAUUGGUAUUCUGUUCUGAAGUCUAAGAUAUUUUUCAGCCUAUAAAGCCCCCUGUUUUAUGCCCUUCUAAUUCUGAUGUUUGGGUAUUGUGUGAGUGC2000000006AUGUGUUUUUUUUUUUUUUUUUAAAGCGUGUGUGAACAAAUGGAAAUAAAGCAGGGACUGUGAACAUUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	91	438	526	587	668	848	866	1009	1136	1361	1494	1513	1826	1858	2019	2019	2054	2216
Modification Positions	Y	Y	m6A	m6A	m6A	Y	Y	m6A	Y	Y	Y	m6A	Y	Y	Am	m6A	Y	m6A
Genomic Coordinates	3:128650728:-	3:128638012:-	3:128637924:-	3:128637863:-	3:128632141:-	3:128631961:-	3:128630139:-	3:128629996:-	3:128626751:-	3:128625586:-	3:128622329:-	3:128622310:-	3:128620427:-	3:128620395:-	None	3:128620234:-	3:128620199:-	3:128620037:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	KTLz8piFYdwC WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	ArijeGVTwYBw WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8		BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL