General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000440097
Gene ID:	ENSG00000144791
Gene Name:	LIMD1
Sequence (UNICHARACTER ENCODING)	GCAGCGGAGGACCCAGCGCCUGGAACGUACCUGCGCCUCAGCCGCCGCGCGUUUGCUCCGGCCCGACUCGCGGCCUCGGCGCCCUCCCGGCCGAUUCAGCUUCACCCGGCCCAGUCGGCUGCUGCCUUGCUGUGAGUUUCCGUGUUUGGUUGCCUAAGGAGGAUGUGAUUUUACUUUUUUGCUGUUUUCUUUUUCCUUUUAUAAUUUGAAGAGGAGAAAAGAACUCCGCUGAGCAGGCCCGGGACGGCGAAGUGCCACCAGCUACCCCAACAAGGЖCGUCUCCAGGGGAAAGGGAGUUGGAAGCAAACUUGGUCCAGCUGGCGUUGAGGUCUCAACUUCGGCUGGЖCUCUUAAAUCCUGGGGUCAUGCCCUUCACGCUAGGCAGGUGGAAGUCUUUACUUGUACUGGGCCGGЖCUUGAGCCCCGACCCUUCGCCAGCAUCUCCCCGCUGCCCUCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGGCACCUGGGCUAGGCCCGGACACCUGUCUGCAGCAUGGAUAAGUAUGACGACCUGGGCCUGGAGGCCAGUAAAUUCAUCGAGGЖCCUGAACAUGUAUGAGGCCUCUAAGGAUGGGCUCUUCCGAGUGGЖCAAGGGUGCAGGCAACAACCCCGAGUUUGAGGAAACUCGCAGGGUGUUCGCCACCAAGAUGGCCAAAAUCCACCUCCAGCAGCAGCAGCAGCAGCUCCUGCAGGAGGAGЖCUCUGCCCAGGGGGAGUAGAGGCCCUGUCAAUGGAGGGGGCCGCCUGGGCCCACAGGCCCGUUGGGAAGUUGUGGGCAGCAAGCUGЖCUGUGGAUGGUGCUGCCAAGCCUCCUCUUGCUGCCUCGACAGGGGCACCUGGGGCAGUCACCACCCUCGCUGCUGGGCAGCCCCCGUACCCACCGCAGGAGCAGAGAUCCAGGCCAUACCUGCAUGGCACGAGGCAUGGCAGCCAGGЖCUGUGGUUCCAGGGAGAGCCUGGCGACUUCUGAGAUGUCUGCUUUCCACCAGCCAGGCCCCUGUGAGGAUCCUUCCUGCCUCACUCAUGGAGЖCUAUUAUGACAACCUCUCCUUGGCAAGCCCAAAGUGGGGUGACAAACCAGGAGUGUCCCCCAGCAUCGGCCUGAGUGUAGGGAGUGGGUGGCCUAGCUCCCCGGGGAGUGACCCACCACUGCCCAAACCCUGCGGGGACCAUCCCCUAAAUCACCGACAGCUCUCCCUGAGCUCCAGCAGGUCUUCUGAGGGUAGCCUCGGUGGUCAGAAUAGUGGCAUUGGUGGCCGCAGCAGCGAGAAGCCAACAGGCCUUUGGUCCACUGCCUCCUCCCAGCGGGUGAGCCCUGGCCUGCCUUCCCCAAACUUGGAGAACGGAGCACCAGCUGUGGGGCCUGUUCAGCCCAGGЖCCCCUUCUGUGUCAGCACCCUUGGCCCUGAGCUGCCCCAGGCAAGGAGGUCUUCCAAGAUCAAЖCUCGGGGCUGGGGGGUGAGGUUUCAGGUGUGAUGUCCAAACCCAAUGUGGЖCCCCCAACCCUGGUUCCAGGAUGGGCCCAAAUCUUACCUUUCCAGUUCUGCCCCGUCAUCCUCGCCAGCUGGUCUGGЖCGGUUCACAGCAGGGUGCGGUCCCUGGGCUGGGGCCGAAGCCUGGCUGCACAGЖCCUUGGCACUGGUCCCAAGCUCAGCCCCACCAGUCUUGUCCAUCCAGUGAUGUCCACCCUGCCUGAGUUAUCUUGUAAAGAGGGUCCCCUGGGCUGGUCUUCUGAUGGUAGCCUGGGAUCUGUGCUCCUGGЖCAGCCCCAGCUCCCCUAGGGUAAGGCUGCCCUGCCAGCCCCUCGUCCCAGGUCCUGAGCUGAGACCCUCUGCUGCUGAGUUGAAAUUAGAAGCCCUCACCCAACGUCUGGAGCGAGAGAUGGAUGCUCACCCGAAGGCUGAUUACUUUGGAGCCUGUGUGAAAUGCAGCAAAGGGGUGUUUGGGGCUGGCCAGGCCUGUCAGGCCAUGGGGAACCUCUACCAUGACACAUGCUUCACCUGUGCAGCUUGCAGCCGGAAGCUGAGAGGAAAAGCCUUUUAUUUUGUCAACGGCAAAGUGUUUUGUGAAGAAGACUUCCUGUACUCUGGUUUCCAGCAGUCGGCUGACAGGUGUUUUCUUUGUGGACAUCUGAUCAUGGACAUGAUCCUGCAAGCCCUGGGGAAGUCCUACCACCCCGGCUGUUUCCGCUGUGUCAUCUGUAAUGAGUGUUUGGAUGGGGUGCCCUUCACCGUGGACUCAGAGAACAAGAUCUACUGUGUCCGAGAUUACCACAAGGUGCUGGCCCCCAAGUGUGCAGCCUGUGGGCUUCCCAUCCUUCCACCUGAGGUAAGAUGCCCUUCCAGACAUGCUCCCAGGGGCUUCUAAGACAUGAAUAUCUCCCUGGGCUCAUUUACAAGAUCCAUGUCCUGUCCUUACAGCUUUUAAGGUAUCCUUUUAAAAAUCUCAACUCUGGCCUGGUGCAGUGGCUCACGCCUGUAAUCCCACCCCUUUUAGGAGGCCCAGGCAGGAAAAUUGCUUGAGGCCUGGAGUUUAAGAACAGCCUGGGCAACAUAGCAAGACCUCAUCUCUACAAAAAAUUGUUAAAAAUUGGCCAAGUGUGGUGGCAUGUGCCUGUAGUCCUAGCUGCUUGAGCCCAAGAGUUUGAGGCUGCAGCGAGCUAUGAUGGUGCUACUGCAUUCCAGCAGGUGACAGCAAGACCUUGUCUCCAAAAAAAAAAAA
Sequence (SHORT NAMES ENCODING)	GCAGCGGAGGACCCAGCGCCUGGAACGUACCUGCGCCUCAGCCGCCGCGCGUUUGCUCCGGCCCGACUCGCGGCCUCGGCGCCCUCCCGGCCGAUUCAGCUUCACCCGGCCCAGUCGGCUGCUGCCUUGCUGUGAGUUUCCGUGUUUGGUUGCCUAAGGAGGAUGUGAUUUUACUUUUUUGCUGUUUUCUUUUUCCUUUUAUAAUUUGAAGAGGAGAAAAGAACUCCGCUGAGCAGGCCCGGGACGGCGAAGUGCCACCAGCUACCCCAACAAGGm6ACGUCUCCAGGGGAAAGGGAGUUGGAAGCAAACUUGGUCCAGCUGGCGUUGAGGUCUCAACUUCGGCUGGm6ACUCUUAAAUCCUGGGGUCAUGCCCUUCACGCUAGGCAGGUGGAAGUCUUUACUUGUACUGGGCCGGm6ACUUGAGCCCCGACCCUUCGCCAGCAUCUCCCCGCUGCCCUCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGGCACCUGGGCUAGGCCCGGACACCUGUCUGCAGCAUGGAUAAGUAUGACGACCUGGGCCUGGAGGCCAGUAAAUUCAUCGAGGm6ACCUGAACAUGUAUGAGGCCUCUAAGGAUGGGCUCUUCCGAGUGGm6ACAAGGGUGCAGGCAACAACCCCGAGUUUGAGGAAACUCGCAGGGUGUUCGCCACCAAGAUGGCCAAAAUCCACCUCCAGCAGCAGCAGCAGCAGCUCCUGCAGGAGGAGm6ACUCUGCCCAGGGGGAGUAGAGGCCCUGUCAAUGGAGGGGGCCGCCUGGGCCCACAGGCCCGUUGGGAAGUUGUGGGCAGCAAGCUGm6ACUGUGGAUGGUGCUGCCAAGCCUCCUCUUGCUGCCUCGACAGGGGCACCUGGGGCAGUCACCACCCUCGCUGCUGGGCAGCCCCCGUACCCACCGCAGGAGCAGAGAUCCAGGCCAUACCUGCAUGGCACGAGGCAUGGCAGCCAGGm6ACUGUGGUUCCAGGGAGAGCCUGGCGACUUCUGAGAUGUCUGCUUUCCACCAGCCAGGCCCCUGUGAGGAUCCUUCCUGCCUCACUCAUGGAGm6ACUAUUAUGACAACCUCUCCUUGGCAAGCCCAAAGUGGGGUGACAAACCAGGAGUGUCCCCCAGCAUCGGCCUGAGUGUAGGGAGUGGGUGGCCUAGCUCCCCGGGGAGUGACCCACCACUGCCCAAACCCUGCGGGGACCAUCCCCUAAAUCACCGACAGCUCUCCCUGAGCUCCAGCAGGUCUUCUGAGGGUAGCCUCGGUGGUCAGAAUAGUGGCAUUGGUGGCCGCAGCAGCGAGAAGCCAACAGGCCUUUGGUCCACUGCCUCCUCCCAGCGGGUGAGCCCUGGCCUGCCUUCCCCAAACUUGGAGAACGGAGCACCAGCUGUGGGGCCUGUUCAGCCCAGGm6ACCCCUUCUGUGUCAGCACCCUUGGCCCUGAGCUGCCCCAGGCAAGGAGGUCUUCCAAGAUCAAm6ACUCGGGGCUGGGGGGUGAGGUUUCAGGUGUGAUGUCCAAACCCAAUGUGGm6ACCCCCAACCCUGGUUCCAGGAUGGGCCCAAAUCUUACCUUUCCAGUUCUGCCCCGUCAUCCUCGCCAGCUGGUCUGGm6ACGGUUCACAGCAGGGUGCGGUCCCUGGGCUGGGGCCGAAGCCUGGCUGCACAGm6ACCUUGGCACUGGUCCCAAGCUCAGCCCCACCAGUCUUGUCCAUCCAGUGAUGUCCACCCUGCCUGAGUUAUCUUGUAAAGAGGGUCCCCUGGGCUGGUCUUCUGAUGGUAGCCUGGGAUCUGUGCUCCUGGm6ACAGCCCCAGCUCCCCUAGGGUAAGGCUGCCCUGCCAGCCCCUCGUCCCAGGUCCUGAGCUGAGACCCUCUGCUGCUGAGUUGAAAUUAGAAGCCCUCACCCAACGUCUGGAGCGAGAGAUGGAUGCUCACCCGAAGGCUGAUUACUUUGGAGCCUGUGUGAAAUGCAGCAAAGGGGUGUUUGGGGCUGGCCAGGCCUGUCAGGCCAUGGGGAACCUCUACCAUGACACAUGCUUCACCUGUGCAGCUUGCAGCCGGAAGCUGAGAGGAAAAGCCUUUUAUUUUGUCAACGGCAAAGUGUUUUGUGAAGAAGACUUCCUGUACUCUGGUUUCCAGCAGUCGGCUGACAGGUGUUUUCUUUGUGGACAUCUGAUCAUGGACAUGAUCCUGCAAGCCCUGGGGAAGUCCUACCACCCCGGCUGUUUCCGCUGUGUCAUCUGUAAUGAGUGUUUGGAUGGGGUGCCCUUCACCGUGGACUCAGAGAACAAGAUCUACUGUGUCCGAGAUUACCACAAGGUGCUGGCCCCCAAGUGUGCAGCCUGUGGGCUUCCCAUCCUUCCACCUGAGGUAAGAUGCCCUUCCAGACAUGCUCCCAGGGGCUUCUAAGACAUGAAUAUCUCCCUGGGCUCAUUUACAAGAUCCAUGUCCUGUCCUUACAGCUUUUAAGGUAUCCUUUUAAAAAUCUCAACUCUGGCCUGGUGCAGUGGCUCACGCCUGUAAUCCCACCCCUUUUAGGAGGCCCAGGCAGGAAAAUUGCUUGAGGCCUGGAGUUUAAGAACAGCCUGGGCAACAUAGCAAGACCUCAUCUCUACAAAAAAUUGUUAAAAAUUGGCCAAGUGUGGUGGCAUGUGCCUGUAGUCCUAGCUGCUUGAGCCCAAGAGUUUGAGGCUGCAGCGAGCUAUGAUGGUGCUACUGCAUUCCAGCAGGUGACAGCAAGACCUUGUCUCCAAAAAAAAAAAA
Sequence (MODOMICS CODE ENCODING)	GCAGCGGAGGACCCAGCGCCUGGAACGUACCUGCGCCUCAGCCGCCGCGCGUUUGCUCCGGCCCGACUCGCGGCCUCGGCGCCCUCCCGGCCGAUUCAGCUUCACCCGGCCCAGUCGGCUGCUGCCUUGCUGUGAGUUUCCGUGUUUGGUUGCCUAAGGAGGAUGUGAUUUUACUUUUUUGCUGUUUUCUUUUUCCUUUUAUAAUUUGAAGAGGAGAAAAGAACUCCGCUGAGCAGGCCCGGGACGGCGAAGUGCCACCAGCUACCCCAACAAGG2000000006ACGUCUCCAGGGGAAAGGGAGUUGGAAGCAAACUUGGUCCAGCUGGCGUUGAGGUCUCAACUUCGGCUGG2000000006ACUCUUAAAUCCUGGGGUCAUGCCCUUCACGCUAGGCAGGUGGAAGUCUUUACUUGUACUGGGCCGG2000000006ACUUGAGCCCCGACCCUUCGCCAGCAUCUCCCCGCUGCCCUCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGGCACCUGGGCUAGGCCCGGACACCUGUCUGCAGCAUGGAUAAGUAUGACGACCUGGGCCUGGAGGCCAGUAAAUUCAUCGAGG2000000006ACCUGAACAUGUAUGAGGCCUCUAAGGAUGGGCUCUUCCGAGUGG2000000006ACAAGGGUGCAGGCAACAACCCCGAGUUUGAGGAAACUCGCAGGGUGUUCGCCACCAAGAUGGCCAAAAUCCACCUCCAGCAGCAGCAGCAGCAGCUCCUGCAGGAGGAG2000000006ACUCUGCCCAGGGGGAGUAGAGGCCCUGUCAAUGGAGGGGGCCGCCUGGGCCCACAGGCCCGUUGGGAAGUUGUGGGCAGCAAGCUG2000000006ACUGUGGAUGGUGCUGCCAAGCCUCCUCUUGCUGCCUCGACAGGGGCACCUGGGGCAGUCACCACCCUCGCUGCUGGGCAGCCCCCGUACCCACCGCAGGAGCAGAGAUCCAGGCCAUACCUGCAUGGCACGAGGCAUGGCAGCCAGG2000000006ACUGUGGUUCCAGGGAGAGCCUGGCGACUUCUGAGAUGUCUGCUUUCCACCAGCCAGGCCCCUGUGAGGAUCCUUCCUGCCUCACUCAUGGAG2000000006ACUAUUAUGACAACCUCUCCUUGGCAAGCCCAAAGUGGGGUGACAAACCAGGAGUGUCCCCCAGCAUCGGCCUGAGUGUAGGGAGUGGGUGGCCUAGCUCCCCGGGGAGUGACCCACCACUGCCCAAACCCUGCGGGGACCAUCCCCUAAAUCACCGACAGCUCUCCCUGAGCUCCAGCAGGUCUUCUGAGGGUAGCCUCGGUGGUCAGAAUAGUGGCAUUGGUGGCCGCAGCAGCGAGAAGCCAACAGGCCUUUGGUCCACUGCCUCCUCCCAGCGGGUGAGCCCUGGCCUGCCUUCCCCAAACUUGGAGAACGGAGCACCAGCUGUGGGGCCUGUUCAGCCCAGG2000000006ACCCCUUCUGUGUCAGCACCCUUGGCCCUGAGCUGCCCCAGGCAAGGAGGUCUUCCAAGAUCAA2000000006ACUCGGGGCUGGGGGGUGAGGUUUCAGGUGUGAUGUCCAAACCCAAUGUGG2000000006ACCCCCAACCCUGGUUCCAGGAUGGGCCCAAAUCUUACCUUUCCAGUUCUGCCCCGUCAUCCUCGCCAGCUGGUCUGG2000000006ACGGUUCACAGCAGGGUGCGGUCCCUGGGCUGGGGCCGAAGCCUGGCUGCACAG2000000006ACCUUGGCACUGGUCCCAAGCUCAGCCCCACCAGUCUUGUCCAUCCAGUGAUGUCCACCCUGCCUGAGUUAUCUUGUAAAGAGGGUCCCCUGGGCUGGUCUUCUGAUGGUAGCCUGGGAUCUGUGCUCCUGG2000000006ACAGCCCCAGCUCCCCUAGGGUAAGGCUGCCCUGCCAGCCCCUCGUCCCAGGUCCUGAGCUGAGACCCUCUGCUGCUGAGUUGAAAUUAGAAGCCCUCACCCAACGUCUGGAGCGAGAGAUGGAUGCUCACCCGAAGGCUGAUUACUUUGGAGCCUGUGUGAAAUGCAGCAAAGGGGUGUUUGGGGCUGGCCAGGCCUGUCAGGCCAUGGGGAACCUCUACCAUGACACAUGCUUCACCUGUGCAGCUUGCAGCCGGAAGCUGAGAGGAAAAGCCUUUUAUUUUGUCAACGGCAAAGUGUUUUGUGAAGAAGACUUCCUGUACUCUGGUUUCCAGCAGUCGGCUGACAGGUGUUUUCUUUGUGGACAUCUGAUCAUGGACAUGAUCCUGCAAGCCCUGGGGAAGUCCUACCACCCCGGCUGUUUCCGCUGUGUCAUCUGUAAUGAGUGUUUGGAUGGGGUGCCCUUCACCGUGGACUCAGAGAACAAGAUCUACUGUGUCCGAGAUUACCACAAGGUGCUGGCCCCCAAGUGUGCAGCCUGUGGGCUUCCCAUCCUUCCACCUGAGGUAAGAUGCCCUUCCAGACAUGCUCCCAGGGGCUUCUAAGACAUGAAUAUCUCCCUGGGCUCAUUUACAAGAUCCAUGUCCUGUCCUUACAGCUUUUAAGGUAUCCUUUUAAAAAUCUCAACUCUGGCCUGGUGCAGUGGCUCACGCCUGUAAUCCCACCCCUUUUAGGAGGCCCAGGCAGGAAAAUUGCUUGAGGCCUGGAGUUUAAGAACAGCCUGGGCAACAUAGCAAGACCUCAUCUCUACAAAAAAUUGUUAAAAAUUGGCCAAGUGUGGUGGCAUGUGCCUGUAGUCCUAGCUGCUUGAGCCCAAGAGUUUGAGGCUGCAGCGAGCUAUGAUGGUGCUACUGCAUUCCAGCAGGUGACAGCAAGACCUUGUCUCCAAAAAAAAAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	276	346	413	606	651	761	848	996	1089	1436	1500	1551	1629	1683	1815
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	3:45594599:+	3:45594669:+	3:45594736:+	3:45594929:+	3:45594974:+	3:45595084:+	3:45595171:+	3:45595319:+	3:45595412:+	3:45595759:+	3:45595823:+	3:45595874:+	3:45595952:+	3:45596006:+	3:45596138:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
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