General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000522525
Gene ID:	ENSG00000206573
Gene Name:	THUMPD3-AS1
Sequence (UNICHARACTER ENCODING)	GCCAAUCAGCGGAAGCCGCCGGGGCCGCCUAGAGAAGAGGCUGUGCUUCGGCGCUCCGGCUCCUCAGAGAGCCUCGGCUAGGUGUGGAAACAGGAAGAGAACUAGAACUGGAAGUAAAGCAUUGAAGAUGUGACUGAAUUGCUGCAAUCUCAUGAUCAAAUUUGAAUGGAUGAGGAGUUGCUUUUUAGGGAUGAGCAAAGAAAGUGGUUUCUCGAGAUGGAAUCUACUGGUUGCUCCUUGAGGGCAGGACAGUUCUUAUGGCUPUAUCCGUUGCGUAAGCACAGAGAGGUCUGCGAGGUCAAAACUAUUGUCAUGAUAGCAAGAUGCCUGUCUUUUUCAUUUAUUCUCACGGUGUGCAGAGGCUACAUGAUGUGUGAUGACAPCCUCAUUGAUGUUAAUGAAUGGUGCUAUACUUGAAUUUUCUAAGGUGUCAUUAGGUAGGUUUAGGUAUGCAUACUUGUUUUUAGAAAUUAUUUUUUUCCUUUUUCCCAUUUUUAGAAAUCAACUCAUUUUUUAGGUUAUGCCUUCAGUAAUCUUUGCAACCUCAAUAUUGUGUAAUGGUUACUPUAAAAUACUGUAGUUUUCUUUGUGCCUAAGUAUAAACAUAAGUACAUUUUGUUGUUUUGUUUGCAAUAGUGGUUUAAAUAUUUUCCCAAAAUAUCCAAAUUUAAAAAUUCUACAACUPUAGAAUUUAAUAAAUUUAUUCUAAAAUAUUUAUAUAUUUUUUCAUUUAAGAAUGGAUCGGCUUAAAAAGACUGCUUCUCAUUUACUUACUGGCUAUACCAUCUGUAUACUAAUAAAAAACAAGAUUUGAUUUGGAAGGACUGACUCAAACUAACGAAAAUAUGAAACCUGUCUUUCUGCUUUGGAGAUAUUUACCUAAUCAUGUUCUGCAGUAGAAUAAUUUAGUUCUUUUGUCUUUUUUUGGAGAUGAGGUCUUGCUGUGUUGCCCAGGCUAUUCACAGCUGCCAUCAUAGUGAACUACAGCCUGAAACUCCUGGGUUCAAGAGAUCCUUCUGCCUCAGCCUCCUGAGUAGCUGGAACUAUAGGCAUGCGCCACCAAGCCUGGGCUUUUAAAAAAAUUUUAAAAAGAAUUUUGAGACAGGAUCUUGCCAUGUUGCUCAGGCUAGUCUUCAACUCCUAGCCCUGAGUGAUCUUGCUUUGGGCCUCUCAAAAUGUUGAGUUAAUAGGCGUGAGCCACCAUACCCAGCCAAAAAUUUUUUUAGAGAUGGGAAUGGAAUGAUCUUGAAUAGUGUUGGUGCCACCUAUGUUGUGGCAUCAUUUUGAAACCAAUCAUUCAGAGUGCUUUUUUUGGUAAGGCAUUAUUUUUUAAUGCAGGUAUGCCACUACUGGGAAAAAAAAAAAAACAGGUUUUAAAGCUAGAAAUGAAAAGCUACUUAAGUAUCUUAAAGGAUAAGUUACUUUAUUAUACACUAGAAACAUACACAAUAGCUGAAAAACUUAAAAAAUCUCACACUGCUGAAUGUCUCUGCUGGCUGAAGUGUAAGUAAAAGAUCAUAGUAGUGCCGCUGUUGAGUGAUAAAGCAACUUGUCAUUAAAGAUGUGUGUGCAGACAUGGAUUCUGAGUUAAUAUCUCAUCUGUAGAAGUAUAUAUUUGUCCCUUGCUUUGGGAUUGGUUUCUGGACAGCACUCCCCCACCCUUGCUGGCCAUUUGCCAAGGACACCAAAACCCAAGGAUGUUGAAUUCCCUUUUAUAAAAUGGCGCUGUAUCUGCAUACAACUUACACACAUCCUCCCAUAUACUUUAAAUCAUUUCCAGAUUUCUUAUACUUCAUACAAUGUGAAUGCUAUAUAAAUAGUUGUUACAUUGUGUACUUAUAUUUGUACUAUUGUAUUAAAUAUUCUCAAAUAUUUUCA
Sequence (SHORT NAMES ENCODING)	GCCAAUCAGCGGAAGCCGCCGGGGCCGCCUAGAGAAGAGGCUGUGCUUCGGCGCUCCGGCUCCUCAGAGAGCCUCGGCUAGGUGUGGAAACAGGAAGAGAACUAGAACUGGAAGUAAAGCAUUGAAGAUGUGACUGAAUUGCUGCAAUCUCAUGAUCAAAUUUGAAUGGAUGAGGAGUUGCUUUUUAGGGAUGAGCAAAGAAAGUGGUUUCUCGAGAUGGAAUCUACUGGUUGCUCCUUGAGGGCAGGACAGUUCUUAUGGCUYUAUCCGUUGCGUAAGCACAGAGAGGUCUGCGAGGUCAAAACUAUUGUCAUGAUAGCAAGAUGCCUGUCUUUUUCAUUUAUUCUCACGGUGUGCAGAGGCUACAUGAUGUGUGAUGACAYCCUCAUUGAUGUUAAUGAAUGGUGCUAUACUUGAAUUUUCUAAGGUGUCAUUAGGUAGGUUUAGGUAUGCAUACUUGUUUUUAGAAAUUAUUUUUUUCCUUUUUCCCAUUUUUAGAAAUCAACUCAUUUUUUAGGUUAUGCCUUCAGUAAUCUUUGCAACCUCAAUAUUGUGUAAUGGUUACUYUAAAAUACUGUAGUUUUCUUUGUGCCUAAGUAUAAACAUAAGUACAUUUUGUUGUUUUGUUUGCAAUAGUGGUUUAAAUAUUUUCCCAAAAUAUCCAAAUUUAAAAAUUCUACAACUYUAGAAUUUAAUAAAUUUAUUCUAAAAUAUUUAUAUAUUUUUUCAUUUAAGAAUGGAUCGGCUUAAAAAGACUGCUUCUCAUUUACUUACUGGCUAUACCAUCUGUAUACUAAUAAAAAACAAGAUUUGAUUUGGAAGGACUGACUCAAACUAACGAAAAUAUGAAACCUGUCUUUCUGCUUUGGAGAUAUUUACCUAAUCAUGUUCUGCAGUAGAAUAAUUUAGUUCUUUUGUCUUUUUUUGGAGAUGAGGUCUUGCUGUGUUGCCCAGGCUAUUCACAGCUGCCAUCAUAGUGAACUACAGCCUGAAACUCCUGGGUUCAAGAGAUCCUUCUGCCUCAGCCUCCUGAGUAGCUGGAACUAUAGGCAUGCGCCACCAAGCCUGGGCUUUUAAAAAAAUUUUAAAAAGAAUUUUGAGACAGGAUCUUGCCAUGUUGCUCAGGCUAGUCUUCAACUCCUAGCCCUGAGUGAUCUUGCUUUGGGCCUCUCAAAAUGUUGAGUUAAUAGGCGUGAGCCACCAUACCCAGCCAAAAAUUUUUUUAGAGAUGGGAAUGGAAUGAUCUUGAAUAGUGUUGGUGCCACCUAUGUUGUGGCAUCAUUUUGAAACCAAUCAUUCAGAGUGCUUUUUUUGGUAAGGCAUUAUUUUUUAAUGCAGGUAUGCCACUACUGGGAAAAAAAAAAAAACAGGUUUUAAAGCUAGAAAUGAAAAGCUACUUAAGUAUCUUAAAGGAUAAGUUACUUUAUUAUACACUAGAAACAUACACAAUAGCUGAAAAACUUAAAAAAUCUCACACUGCUGAAUGUCUCUGCUGGCUGAAGUGUAAGUAAAAGAUCAUAGUAGUGCCGCUGUUGAGUGAUAAAGCAACUUGUCAUUAAAGAUGUGUGUGCAGACAUGGAUUCUGAGUUAAUAUCUCAUCUGUAGAAGUAUAUAUUUGUCCCUUGCUUUGGGAUUGGUUUCUGGACAGCACUCCCCCACCCUUGCUGGCCAUUUGCCAAGGACACCAAAACCCAAGGAUGUUGAAUUCCCUUUUAUAAAAUGGCGCUGUAUCUGCAUACAACUUACACACAUCCUCCCAUAUACUUUAAAUCAUUUCCAGAUUUCUUAUACUUCAUACAAUGUGAAUGCUAUAUAAAUAGUUGUUACAUUGUGUACUUAUAUUUGUACUAUUGUAUUAAAUAUUCUCAAAUAUUUUCA
Sequence (MODOMICS CODE ENCODING)	GCCAAUCAGCGGAAGCCGCCGGGGCCGCCUAGAGAAGAGGCUGUGCUUCGGCGCUCCGGCUCCUCAGAGAGCCUCGGCUAGGUGUGGAAACAGGAAGAGAACUAGAACUGGAAGUAAAGCAUUGAAGAUGUGACUGAAUUGCUGCAAUCUCAUGAUCAAAUUUGAAUGGAUGAGGAGUUGCUUUUUAGGGAUGAGCAAAGAAAGUGGUUUCUCGAGAUGGAAUCUACUGGUUGCUCCUUGAGGGCAGGACAGUUCUUAUGGCU2000000009UUAUCCGUUGCGUAAGCACAGAGAGGUCUGCGAGGUCAAAACUAUUGUCAUGAUAGCAAGAUGCCUGUCUUUUUCAUUUAUUCUCACGGUGUGCAGAGGCUACAUGAUGUGUGAUGACA2000000009UCCUCAUUGAUGUUAAUGAAUGGUGCUAUACUUGAAUUUUCUAAGGUGUCAUUAGGUAGGUUUAGGUAUGCAUACUUGUUUUUAGAAAUUAUUUUUUUCCUUUUUCCCAUUUUUAGAAAUCAACUCAUUUUUUAGGUUAUGCCUUCAGUAAUCUUUGCAACCUCAAUAUUGUGUAAUGGUUACU2000000009UUAAAAUACUGUAGUUUUCUUUGUGCCUAAGUAUAAACAUAAGUACAUUUUGUUGUUUUGUUUGCAAUAGUGGUUUAAAUAUUUUCCCAAAAUAUCCAAAUUUAAAAAUUCUACAACU2000000009UUAGAAUUUAAUAAAUUUAUUCUAAAAUAUUUAUAUAUUUUUUCAUUUAAGAAUGGAUCGGCUUAAAAAGACUGCUUCUCAUUUACUUACUGGCUAUACCAUCUGUAUACUAAUAAAAAACAAGAUUUGAUUUGGAAGGACUGACUCAAACUAACGAAAAUAUGAAACCUGUCUUUCUGCUUUGGAGAUAUUUACCUAAUCAUGUUCUGCAGUAGAAUAAUUUAGUUCUUUUGUCUUUUUUUGGAGAUGAGGUCUUGCUGUGUUGCCCAGGCUAUUCACAGCUGCCAUCAUAGUGAACUACAGCCUGAAACUCCUGGGUUCAAGAGAUCCUUCUGCCUCAGCCUCCUGAGUAGCUGGAACUAUAGGCAUGCGCCACCAAGCCUGGGCUUUUAAAAAAAUUUUAAAAAGAAUUUUGAGACAGGAUCUUGCCAUGUUGCUCAGGCUAGUCUUCAACUCCUAGCCCUGAGUGAUCUUGCUUUGGGCCUCUCAAAAUGUUGAGUUAAUAGGCGUGAGCCACCAUACCCAGCCAAAAAUUUUUUUAGAGAUGGGAAUGGAAUGAUCUUGAAUAGUGUUGGUGCCACCUAUGUUGUGGCAUCAUUUUGAAACCAAUCAUUCAGAGUGCUUUUUUUGGUAAGGCAUUAUUUUUUAAUGCAGGUAUGCCACUACUGGGAAAAAAAAAAAAACAGGUUUUAAAGCUAGAAAUGAAAAGCUACUUAAGUAUCUUAAAGGAUAAGUUACUUUAUUAUACACUAGAAACAUACACAAUAGCUGAAAAACUUAAAAAAUCUCACACUGCUGAAUGUCUCUGCUGGCUGAAGUGUAAGUAAAAGAUCAUAGUAGUGCCGCUGUUGAGUGAUAAAGCAACUUGUCAUUAAAGAUGUGUGUGCAGACAUGGAUUCUGAGUUAAUAUCUCAUCUGUAGAAGUAUAUAUUUGUCCCUUGCUUUGGGAUUGGUUUCUGGACAGCACUCCCCCACCCUUGCUGGCCAUUUGCCAAGGACACCAAAACCCAAGGAUGUUGAAUUCCCUUUUAUAAAAUGGCGCUGUAUCUGCAUACAACUUACACACAUCCUCCCAUAUACUUUAAAUCAUUUCCAGAUUUCUUAUACUUCAUACAAUGUGAAUGCUAUAUAAAUAGUUGUUACAUUGUGUACUUAUAUUUGUACUAUUGUAUUAAAUAUUCUCAAAUAUUUUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	264	383	567	685
Modification Positions	Y	Y	Y	Y
Genomic Coordinates	3:9390463:-	3:9390344:-	3:9390160:-	3:9390042:-
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8