Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000482349
Gene ID: ENSG00000113812
Gene Name: ACTR8
Sequence (UNICHARACTER ENCODING) GCGCGCCGGGACGCCGAGGGCUGGGAGGUGCGGAGCGCCAGGAGCCAGGCGGAGCCCCCGCAGGGACACCGCUCCGAUCUCCCGCACGCCCCACCGUCUGGUUGUGUGCGCUCCUGCCCGGGCUCUGGCCUCAGCUUCCCCGACCAUAAAACGACCACGGUUCAACAACUPUAAGGAUUGGUCGAGCCACAGACACUCUUCCUGCCAGCAUUCCUCACGUCAUUGCCCGAAGACACAAACAACAAGGGCAGCCCCUAUACAAGGACAGUUGGCUCCUAAGGGAGGGACUAAAUAAACCAGAAAGUAAUGAACAAAGACAAAAUGGCCUUAAAAUGGUGGAUCAAGCAAUAUGGUCUAAAAAGAUGUCCAAUGGUACAAGACGCAUUCCUGUGUCCCCUGAACAGGCACGCUCCUACAAUAAGCAGAUGCGACCUGCAAUUUUAGAUCACUGUUCGGGAAAUAAGUGGACAAACACAUCUCAUCACCCUGAGUAUUUAGUAGGAGAAGAGGCCUUGUAUGUUAAUCCACUGGACUGUUACAAUAUUCACUGGCCUAUCAGAAGAGGUCAGUUAAAUAUUCACCCAGGCCCUGGGGGCUCUCUUACAGCUGUUCUGGCAGAUAUUGAAGUAAUAUGGUCUCAUGCGAUACAAAAAUACUUGGAAAUCCCACUGAAAGAUUUAAAGUAUUAUAGAUGUAUCUUGUUAAUUCCUGAUAUCUAUAAUAAGCAGCAUGUGAAAGAACUAGUGAAUAUGAUACUAAUGAAGAUGGGUUUUUCAGGGAUUGUGGUCCAUCAGGAGUCUGUGUGUGCCACCUAUGGAAGUGGCUUAAGCAGCACGUGUAUUGUAGACGUUGGGGACCAGAAGACAAGUGUAUGCUGUGUGGAGGAUGGGGUGUCUCAUCGGAAUACUCGGCUUUGUCUGGCAUACGGAGGAUCUGAUGUGUCAAGAUGUUUUUACUGGCUAAUGCAGCGAGCUGGGUUCCCUUACAGAGAAUGCCAGUUAACAAAUAAAAUGGAUUGUCUUCUUCUGCAACACCUUAAAGAAACUUUUUGUCAUUUAGAUCAGGACAUCUCUGGGCUUCAGGACCAUGAGUUUCAGAUUCGACAPCCUGAUUCUCCUGCCCUGCUPUACCAGUUUCGAUUAGGAGAUGAAAAACUGCAGGCUCCAAUGGCUUUGUUUUACCCCGCAACUUUUGGAAUCGUUGGACAGAAAAUGACGACUUUGCAGCACAGAUCUCAGGGCGAUCCUGAGGAUCCUCACGAUGAACAUUACCUGCUGGCCACACAGAGCAAЖCAAGAACAGUCUGCAAAAGCUACUGCUGACCGAAAGUCUGCAPCCAAACCUAUUGGAUUUGAAGGGGAUCUUCGUGGCCAGUCCUCUGAUCUUCCAGAAAGACUCCAUUCCCAGGAGGUAGAUUUGGGGUCUGCACAGGGAGAUGGCCUGAUGGCCGGCAACGAUUCCGAGGAGGCCCUCACUGCACUGAUGUCCAGGAAGACUGCCAUCUCGCUGUUUGAAGGAAAAGCCCUGGGCCUGGAUAAAGCCAPCCPCCAUAGCAUAGЖCUGCUGUUCAUCUGACGACACCAAAAAGAAGAUGUACAGCUCCAPCCUAGUGGUGGGAGGUGGUUUGAUGUUUCAUAAAGCUCAAGAAUUUCUGCAGCACAGAAUUCUCAACAAAAUGCCACCAUCCUUCAGGCGAAUUAUUGAAAAUGUGGAUGUGAUCACAAGGCCUAAGGACAUGGACCCCCGGCUGAUUGCAUGGAAAGGAGGGGCAGUGUUGGCUUGUUUGGAUACAACACAGGAЖCUGUGGAUUUAUCAGCGAGAGUGGCAGCGCUUUGGUGUCCGCAUGUUACGAGAGCGGGCUGCGUUUGUGUGGUGAAUGGGGAGGAAAUGUCACUGCCGAAGACCAAAAACAAGCUUCUUGGUAUAAAAGЖCUCUUACAGAAUAUGUGUAUUGUAAUUUAUUGAUCUGGAUGCUUAAGUGUCAUGGЖCAGUAAAUGAAUUUGAЖCUUUAUGUUGAGGЖCAUGACAUUGGUUUGAAAAUAUAAACUGCUUUUGAGCAGUUUAGUCAGGGCAUUUGAGAAUAAAUAGGAACUUUC
Sequence (SHORT NAMES ENCODING) GCGCGCCGGGACGCCGAGGGCUGGGAGGUGCGGAGCGCCAGGAGCCAGGCGGAGCCCCCGCAGGGACACCGCUCCGAUCUCCCGCACGCCCCACCGUCUGGUUGUGUGCGCUCCUGCCCGGGCUCUGGCCUCAGCUUCCCCGACCAUAAAACGACCACGGUUCAACAACUYUAAGGAUUGGUCGAGCCACAGACACUCUUCCUGCCAGCAUUCCUCACGUCAUUGCCCGAAGACACAAACAACAAGGGCAGCCCCUAUACAAGGACAGUUGGCUCCUAAGGGAGGGACUAAAUAAACCAGAAAGUAAUGAACAAAGACAAAAUGGCCUUAAAAUGGUGGAUCAAGCAAUAUGGUCUAAAAAGAUGUCCAAUGGUACAAGACGCAUUCCUGUGUCCCCUGAACAGGCACGCUCCUACAAUAAGCAGAUGCGACCUGCAAUUUUAGAUCACUGUUCGGGAAAUAAGUGGACAAACACAUCUCAUCACCCUGAGUAUUUAGUAGGAGAAGAGGCCUUGUAUGUUAAUCCACUGGACUGUUACAAUAUUCACUGGCCUAUCAGAAGAGGUCAGUUAAAUAUUCACCCAGGCCCUGGGGGCUCUCUUACAGCUGUUCUGGCAGAUAUUGAAGUAAUAUGGUCUCAUGCGAUACAAAAAUACUUGGAAAUCCCACUGAAAGAUUUAAAGUAUUAUAGAUGUAUCUUGUUAAUUCCUGAUAUCUAUAAUAAGCAGCAUGUGAAAGAACUAGUGAAUAUGAUACUAAUGAAGAUGGGUUUUUCAGGGAUUGUGGUCCAUCAGGAGUCUGUGUGUGCCACCUAUGGAAGUGGCUUAAGCAGCACGUGUAUUGUAGACGUUGGGGACCAGAAGACAAGUGUAUGCUGUGUGGAGGAUGGGGUGUCUCAUCGGAAUACUCGGCUUUGUCUGGCAUACGGAGGAUCUGAUGUGUCAAGAUGUUUUUACUGGCUAAUGCAGCGAGCUGGGUUCCCUUACAGAGAAUGCCAGUUAACAAAUAAAAUGGAUUGUCUUCUUCUGCAACACCUUAAAGAAACUUUUUGUCAUUUAGAUCAGGACAUCUCUGGGCUUCAGGACCAUGAGUUUCAGAUUCGACAYCCUGAUUCUCCUGCCCUGCUYUACCAGUUUCGAUUAGGAGAUGAAAAACUGCAGGCUCCAAUGGCUUUGUUUUACCCCGCAACUUUUGGAAUCGUUGGACAGAAAAUGACGACUUUGCAGCACAGAUCUCAGGGCGAUCCUGAGGAUCCUCACGAUGAACAUUACCUGCUGGCCACACAGAGCAAm6ACAAGAACAGUCUGCAAAAGCUACUGCUGACCGAAAGUCUGCAYCCAAACCUAUUGGAUUUGAAGGGGAUCUUCGUGGCCAGUCCUCUGAUCUUCCAGAAAGACUCCAUUCCCAGGAGGUAGAUUUGGGGUCUGCACAGGGAGAUGGCCUGAUGGCCGGCAACGAUUCCGAGGAGGCCCUCACUGCACUGAUGUCCAGGAAGACUGCCAUCUCGCUGUUUGAAGGAAAAGCCCUGGGCCUGGAUAAAGCCAYCCYCCAUAGCAUAGm6ACUGCUGUUCAUCUGACGACACCAAAAAGAAGAUGUACAGCUCCAYCCUAGUGGUGGGAGGUGGUUUGAUGUUUCAUAAAGCUCAAGAAUUUCUGCAGCACAGAAUUCUCAACAAAAUGCCACCAUCCUUCAGGCGAAUUAUUGAAAAUGUGGAUGUGAUCACAAGGCCUAAGGACAUGGACCCCCGGCUGAUUGCAUGGAAAGGAGGGGCAGUGUUGGCUUGUUUGGAUACAACACAGGAm6ACUGUGGAUUUAUCAGCGAGAGUGGCAGCGCUUUGGUGUCCGCAUGUUACGAGAGCGGGCUGCGUUUGUGUGGUGAAUGGGGAGGAAAUGUCACUGCCGAAGACCAAAAACAAGCUUCUUGGUAUAAAAGm6ACUCUUACAGAAUAUGUGUAUUGUAAUUUAUUGAUCUGGAUGCUUAAGUGUCAUGGm6ACAGUAAAUGAAUUUGAm6ACUUUAUGUUGAGGm6ACAUGACAUUGGUUUGAAAAUAUAAACUGCUUUUGAGCAGUUUAGUCAGGGCAUUUGAGAAUAAAUAGGAACUUUC
Sequence (MODOMICS CODE ENCODING) GCGCGCCGGGACGCCGAGGGCUGGGAGGUGCGGAGCGCCAGGAGCCAGGCGGAGCCCCCGCAGGGACACCGCUCCGAUCUCCCGCACGCCCCACCGUCUGGUUGUGUGCGCUCCUGCCCGGGCUCUGGCCUCAGCUUCCCCGACCAUAAAACGACCACGGUUCAACAACU2000000009UUAAGGAUUGGUCGAGCCACAGACACUCUUCCUGCCAGCAUUCCUCACGUCAUUGCCCGAAGACACAAACAACAAGGGCAGCCCCUAUACAAGGACAGUUGGCUCCUAAGGGAGGGACUAAAUAAACCAGAAAGUAAUGAACAAAGACAAAAUGGCCUUAAAAUGGUGGAUCAAGCAAUAUGGUCUAAAAAGAUGUCCAAUGGUACAAGACGCAUUCCUGUGUCCCCUGAACAGGCACGCUCCUACAAUAAGCAGAUGCGACCUGCAAUUUUAGAUCACUGUUCGGGAAAUAAGUGGACAAACACAUCUCAUCACCCUGAGUAUUUAGUAGGAGAAGAGGCCUUGUAUGUUAAUCCACUGGACUGUUACAAUAUUCACUGGCCUAUCAGAAGAGGUCAGUUAAAUAUUCACCCAGGCCCUGGGGGCUCUCUUACAGCUGUUCUGGCAGAUAUUGAAGUAAUAUGGUCUCAUGCGAUACAAAAAUACUUGGAAAUCCCACUGAAAGAUUUAAAGUAUUAUAGAUGUAUCUUGUUAAUUCCUGAUAUCUAUAAUAAGCAGCAUGUGAAAGAACUAGUGAAUAUGAUACUAAUGAAGAUGGGUUUUUCAGGGAUUGUGGUCCAUCAGGAGUCUGUGUGUGCCACCUAUGGAAGUGGCUUAAGCAGCACGUGUAUUGUAGACGUUGGGGACCAGAAGACAAGUGUAUGCUGUGUGGAGGAUGGGGUGUCUCAUCGGAAUACUCGGCUUUGUCUGGCAUACGGAGGAUCUGAUGUGUCAAGAUGUUUUUACUGGCUAAUGCAGCGAGCUGGGUUCCCUUACAGAGAAUGCCAGUUAACAAAUAAAAUGGAUUGUCUUCUUCUGCAACACCUUAAAGAAACUUUUUGUCAUUUAGAUCAGGACAUCUCUGGGCUUCAGGACCAUGAGUUUCAGAUUCGACA2000000009UCCUGAUUCUCCUGCCCUGCU2000000009UUACCAGUUUCGAUUAGGAGAUGAAAAACUGCAGGCUCCAAUGGCUUUGUUUUACCCCGCAACUUUUGGAAUCGUUGGACAGAAAAUGACGACUUUGCAGCACAGAUCUCAGGGCGAUCCUGAGGAUCCUCACGAUGAACAUUACCUGCUGGCCACACAGAGCAA2000000006ACAAGAACAGUCUGCAAAAGCUACUGCUGACCGAAAGUCUGCA2000000009UCCAAACCUAUUGGAUUUGAAGGGGAUCUUCGUGGCCAGUCCUCUGAUCUUCCAGAAAGACUCCAUUCCCAGGAGGUAGAUUUGGGGUCUGCACAGGGAGAUGGCCUGAUGGCCGGCAACGAUUCCGAGGAGGCCCUCACUGCACUGAUGUCCAGGAAGACUGCCAUCUCGCUGUUUGAAGGAAAAGCCCUGGGCCUGGAUAAAGCCA2000000009UCC2000000009UCCAUAGCAUAG2000000006ACUGCUGUUCAUCUGACGACACCAAAAAGAAGAUGUACAGCUCCA2000000009UCCUAGUGGUGGGAGGUGGUUUGAUGUUUCAUAAAGCUCAAGAAUUUCUGCAGCACAGAAUUCUCAACAAAAUGCCACCAUCCUUCAGGCGAAUUAUUGAAAAUGUGGAUGUGAUCACAAGGCCUAAGGACAUGGACCCCCGGCUGAUUGCAUGGAAAGGAGGGGCAGUGUUGGCUUGUUUGGAUACAACACAGGA2000000006ACUGUGGAUUUAUCAGCGAGAGUGGCAGCGCUUUGGUGUCCGCAUGUUACGAGAGCGGGCUGCGUUUGUGUGGUGAAUGGGGAGGAAAUGUCACUGCCGAAGACCAAAAACAAGCUUCUUGGUAUAAAAG2000000006ACUCUUACAGAAUAUGUGUAUUGUAAUUUAUUGAUCUGGAUGCUUAAGUGUCAUGG2000000006ACAGUAAAUGAAUUUGA2000000006ACUUUAUGUUGAGG2000000006ACAUGACAUUGGUUUGAAAAUAUAAACUGCUUUUGAGCAGUUUAGUCAGGGCAUUUGAGAAUAAAUAGGAACUUUC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 171 1106 1127 1292 1335 1543 1546 1558 1603 1799 1929 1985 2002 2016
Modification Positions Y Y Y m6A Y Y Y m6A Y m6A m6A m6A m6A m6A
Genomic Coordinates 3:53880061:- 3:53873086:- 3:53873065:- 3:53872393:- 3:53871463:- 3:53871255:- 3:53871252:- 3:53871240:- 3:53870109:- 3:53868794:- 3:53868664:- 3:53868608:- 3:53868591:- 3:53868577:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
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UN3tNpbCPHYf
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Lny8GcCeVGc9
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
6UuHp6YApVKv
aivdrAsbdKEU
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jNkxUQNx8GRd
msuJfBpJvM5H
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Q36pf44ZRvxu
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
JkWoGWVwjNda
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KENzb7mwdBd9
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Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
ArijeGVTwYBw
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
8cMbzB4aD5Se
ArijeGVTwYBw
Lny8GcCeVGc9
BtsJQJ3DteUq