Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000310864
Gene ID: ENSG00000173226
Gene Name: IQCB1
Sequence (UNICHARACTER ENCODING) GCGUCGCGACGCACGCUGCCCCGGAAGGCCGCGGCGCUGUAGUGCGGCGUGGGAGCCCCAGGUUCUUUAGUGGAAGAACGCGAAGCGAGGAUGAGUGAUCCGUGGAGGCAGUAACAGGCGCGGCGAGGGAGAAGUGAUUCCCGAAGAAUCAAGGCUGGGCCGGACCCGGUGGCCUGGCAACAGGGUAAUAAGAGAAAUGAAGCCAACAGGUACAGACCCAAGGAUCUUAUCUAUAGCUGCUGAAGUUGCAAAAAGCCCUGAGCAGAAUGUCCCUGUUAUACUGUUGAAGUUAAAAGAAAUAAUAAACAUCACACCUPUAGGAAGCUCAGAGUUGAAGAAAAUCAAACAAGAUAUAUAUUGUUAUGAUCUCAUUCAAUAUUGCCUCUUGGUCCUCAGUCAAGAUUAUUCUCGAAUCCAGGGUGGUUGGACUACAAUUUCCCAGCUUACACAGAUAUUAAGCCAUUGCUGUGUGGGCUUGGAGCCAGGAGAAGAUGCAGAGGAAUUUUACAAUGAAUUACUUCCAUCAGCUGCAGAAAAUUUUCUAGUUUUGGGGAGACAAUUACAAACAUGUUUUAUCAAUGCAGCUAAGGCUGAAGAAAAAGAUGAAUUACUACACUUUUUCCAAAUUGUGACUGAUUCUCUCUUCUGGCUUUUGGGAGGCCAUGUUGAACUUAUUCAGAAUGUACUACAAAGUGAUCAUUUCUUACAUUUACUGCAAGCUGACAAUGUCCAAAUAGGAUCUGCAGUCAUGAUGAUGCUACAGAAUAUACUACAGAUCAACAGUGGUGAUUUACUCAGAAUAGGAAGAAAAGCCCUGUAUUCAAUUUUAGAUGAAGUUAUUUUCAAGCUUUUUUCAACUCCUAGUCCAGUUAUAAGAAGUACUGCUACAAAACUCCUACUGUUGAUGGCUGAAUCCCAUCAGGAAAUUUUGAUUUUACUGAGACAAAGUACCUGCUACAAAGGACUCAGACGUCUACUAAGUAAACAGGAAACUGGGACUGAAUUCAGUCAAGAACUUAGACAGCUUGUUGGCCUUUUAAGCCCAAUGGUCUAUCAGGAAGUAGAAGAGCAGAAЖCUACAUCAAGCAGCAUGCUUGAUUCAAGCCUAUUGGAAGGGUUUUCAGACAAGAAAGAGAUUAAAGAAGCUUCCAUCUGCUGUGAUUGCUUUGCAGAGGAGUUUCAGAUCCAAACGAUCAAAGAUGUUGCUGGAGAUAAAUAGGCAGAAGGAAGAAGAGGACCUCAAAUUACAAUUGCAACUUCAAAGACAGAGAGCCAUGAGACUUUCCCGAGAAUUGCAGCUGAGUAUGCUCGAAAUAGUUCAPCCAGGUCAGGUGGAGAAACACUAUCGGGAAAUGGAAGAGAAAUCAGCACUGAUUAUCCAGAAACAUUGGAGAGGGUACAGGGAAAGGAAAAAUUUUCACCAACAGAGGCAGUCUCUCAUAGAGUAUAAAGCAGCUGUCACACUUCAAAGAGCAGCGCUUAAAUUCCUAGCGAAGUGCCGUAAGAAAAAGAAACUAUUUGCUCCUUGGCGAGGACUCCAAGAACUCACUGAUGCACGCCGAGUUGAACUGAAGAAACGAGUGGAUGACUAUGUCAGAAGACAUUUGGGCUCUCCAAUGUCAGAUGUGGUCAGUAGGGAGCUCCAUGCCCAAGCUCAAGAACGACUGCAACABUACUPUAUGGGCAGGGCCCUAGAAGAGCGAGCCCAGCAGCACAGAGAAGCUCUGAUAGCACAGAUCAGCACCAACGUUGAЖCAGCUAAUGAAGGCACCAAGUCUGAAGGAGGCAGAAGGGAAAGAACCUGAGCUCUUCCUAAGUAGAUCCAGGCCUGUGGCAGCCAAGGCCAAGCAGGCCCAUCUCACAACCCUGAAGCACAUACAAGCACCCUGGUGGAAGAAGCUUGGAGAAGAAUCUGGAGAUGAGAUUGAUGUUCCAAAGGAUGAGCUUAGUAUAGAAUUAGAAAAUUUAUUCAUUGGUGGAACCAAЖCCACCUUAGUGAGUAACCCUAAGAAUUGACACAAAUCUCAUAUUUUAGGAGAUUAUAUUGGUUCUGCCUCUGGCAUGCUGGUAGЖCUAGGGCCAUCCUAЖCUUAUUAUUUUCCAGAGGUUCUCCUCCAGACAAGACCUGCAGUAAGCAAAGAGUUAUAUUCUACCUCUCUCUCAAUUUUCUUUUUCUUUUCUCUGUAUCCUCAUCGUUAGCCACACACAGAUUUGUGUGGCUUUUAUUGUAGAACUAAACUUAGCAUAGUGUUCUGUUGUUUACAUGAAGUGUGUUUUUCUUUGGUUUCUUCUGUUUUCCAACUAAAUAUUUUUUUCUAAAUAAAUAUUUUCAACAAUUGAUUUGAAAAAUUUGUCAGGAUUAUUUCAACUUUUCACAUUUGUUAUCUGAAAUUCCUAUUUCCUGUUAЖCAUAGGAGGUGUGUGCAGACUPUAUUAAUGUGAGGAAAAGAAAUGCUCAAUUGAAGGACAUUUCCCUGUUUUCUAUAAAGCAAUGGUUGAACUCAUUUUCUAUUUUGUUAUUUCUAAAAGGAACUGCAUACCAAAAAAAUGCAUUCUUUCUAUUAAACUGUGAGAACUACAUAA
Sequence (SHORT NAMES ENCODING) GCGUCGCGACGCACGCUGCCCCGGAAGGCCGCGGCGCUGUAGUGCGGCGUGGGAGCCCCAGGUUCUUUAGUGGAAGAACGCGAAGCGAGGAUGAGUGAUCCGUGGAGGCAGUAACAGGCGCGGCGAGGGAGAAGUGAUUCCCGAAGAAUCAAGGCUGGGCCGGACCCGGUGGCCUGGCAACAGGGUAAUAAGAGAAAUGAAGCCAACAGGUACAGACCCAAGGAUCUUAUCUAUAGCUGCUGAAGUUGCAAAAAGCCCUGAGCAGAAUGUCCCUGUUAUACUGUUGAAGUUAAAAGAAAUAAUAAACAUCACACCUYUAGGAAGCUCAGAGUUGAAGAAAAUCAAACAAGAUAUAUAUUGUUAUGAUCUCAUUCAAUAUUGCCUCUUGGUCCUCAGUCAAGAUUAUUCUCGAAUCCAGGGUGGUUGGACUACAAUUUCCCAGCUUACACAGAUAUUAAGCCAUUGCUGUGUGGGCUUGGAGCCAGGAGAAGAUGCAGAGGAAUUUUACAAUGAAUUACUUCCAUCAGCUGCAGAAAAUUUUCUAGUUUUGGGGAGACAAUUACAAACAUGUUUUAUCAAUGCAGCUAAGGCUGAAGAAAAAGAUGAAUUACUACACUUUUUCCAAAUUGUGACUGAUUCUCUCUUCUGGCUUUUGGGAGGCCAUGUUGAACUUAUUCAGAAUGUACUACAAAGUGAUCAUUUCUUACAUUUACUGCAAGCUGACAAUGUCCAAAUAGGAUCUGCAGUCAUGAUGAUGCUACAGAAUAUACUACAGAUCAACAGUGGUGAUUUACUCAGAAUAGGAAGAAAAGCCCUGUAUUCAAUUUUAGAUGAAGUUAUUUUCAAGCUUUUUUCAACUCCUAGUCCAGUUAUAAGAAGUACUGCUACAAAACUCCUACUGUUGAUGGCUGAAUCCCAUCAGGAAAUUUUGAUUUUACUGAGACAAAGUACCUGCUACAAAGGACUCAGACGUCUACUAAGUAAACAGGAAACUGGGACUGAAUUCAGUCAAGAACUUAGACAGCUUGUUGGCCUUUUAAGCCCAAUGGUCUAUCAGGAAGUAGAAGAGCAGAAm6ACUACAUCAAGCAGCAUGCUUGAUUCAAGCCUAUUGGAAGGGUUUUCAGACAAGAAAGAGAUUAAAGAAGCUUCCAUCUGCUGUGAUUGCUUUGCAGAGGAGUUUCAGAUCCAAACGAUCAAAGAUGUUGCUGGAGAUAAAUAGGCAGAAGGAAGAAGAGGACCUCAAAUUACAAUUGCAACUUCAAAGACAGAGAGCCAUGAGACUUUCCCGAGAAUUGCAGCUGAGUAUGCUCGAAAUAGUUCAYCCAGGUCAGGUGGAGAAACACUAUCGGGAAAUGGAAGAGAAAUCAGCACUGAUUAUCCAGAAACAUUGGAGAGGGUACAGGGAAAGGAAAAAUUUUCACCAACAGAGGCAGUCUCUCAUAGAGUAUAAAGCAGCUGUCACACUUCAAAGAGCAGCGCUUAAAUUCCUAGCGAAGUGCCGUAAGAAAAAGAAACUAUUUGCUCCUUGGCGAGGACUCCAAGAACUCACUGAUGCACGCCGAGUUGAACUGAAGAAACGAGUGGAUGACUAUGUCAGAAGACAUUUGGGCUCUCCAAUGUCAGAUGUGGUCAGUAGGGAGCUCCAUGCCCAAGCUCAAGAACGACUGCAACACmUACUYUAUGGGCAGGGCCCUAGAAGAGCGAGCCCAGCAGCACAGAGAAGCUCUGAUAGCACAGAUCAGCACCAACGUUGAm6ACAGCUAAUGAAGGCACCAAGUCUGAAGGAGGCAGAAGGGAAAGAACCUGAGCUCUUCCUAAGUAGAUCCAGGCCUGUGGCAGCCAAGGCCAAGCAGGCCCAUCUCACAACCCUGAAGCACAUACAAGCACCCUGGUGGAAGAAGCUUGGAGAAGAAUCUGGAGAUGAGAUUGAUGUUCCAAAGGAUGAGCUUAGUAUAGAAUUAGAAAAUUUAUUCAUUGGUGGAACCAAm6ACCACCUUAGUGAGUAACCCUAAGAAUUGACACAAAUCUCAUAUUUUAGGAGAUUAUAUUGGUUCUGCCUCUGGCAUGCUGGUAGm6ACUAGGGCCAUCCUAm6ACUUAUUAUUUUCCAGAGGUUCUCCUCCAGACAAGACCUGCAGUAAGCAAAGAGUUAUAUUCUACCUCUCUCUCAAUUUUCUUUUUCUUUUCUCUGUAUCCUCAUCGUUAGCCACACACAGAUUUGUGUGGCUUUUAUUGUAGAACUAAACUUAGCAUAGUGUUCUGUUGUUUACAUGAAGUGUGUUUUUCUUUGGUUUCUUCUGUUUUCCAACUAAAUAUUUUUUUCUAAAUAAAUAUUUUCAACAAUUGAUUUGAAAAAUUUGUCAGGAUUAUUUCAACUUUUCACAUUUGUUAUCUGAAAUUCCUAUUUCCUGUUAm6ACAUAGGAGGUGUGUGCAGACUYUAUUAAUGUGAGGAAAAGAAAUGCUCAAUUGAAGGACAUUUCCCUGUUUUCUAUAAAGCAAUGGUUGAACUCAUUUUCUAUUUUGUUAUUUCUAAAAGGAACUGCAUACCAAAAAAAUGCAUUCUUUCUAUUAAACUGUGAGAACUACAUAA
Sequence (MODOMICS CODE ENCODING) GCGUCGCGACGCACGCUGCCCCGGAAGGCCGCGGCGCUGUAGUGCGGCGUGGGAGCCCCAGGUUCUUUAGUGGAAGAACGCGAAGCGAGGAUGAGUGAUCCGUGGAGGCAGUAACAGGCGCGGCGAGGGAGAAGUGAUUCCCGAAGAAUCAAGGCUGGGCCGGACCCGGUGGCCUGGCAACAGGGUAAUAAGAGAAAUGAAGCCAACAGGUACAGACCCAAGGAUCUUAUCUAUAGCUGCUGAAGUUGCAAAAAGCCCUGAGCAGAAUGUCCCUGUUAUACUGUUGAAGUUAAAAGAAAUAAUAAACAUCACACCU2000000009UUAGGAAGCUCAGAGUUGAAGAAAAUCAAACAAGAUAUAUAUUGUUAUGAUCUCAUUCAAUAUUGCCUCUUGGUCCUCAGUCAAGAUUAUUCUCGAAUCCAGGGUGGUUGGACUACAAUUUCCCAGCUUACACAGAUAUUAAGCCAUUGCUGUGUGGGCUUGGAGCCAGGAGAAGAUGCAGAGGAAUUUUACAAUGAAUUACUUCCAUCAGCUGCAGAAAAUUUUCUAGUUUUGGGGAGACAAUUACAAACAUGUUUUAUCAAUGCAGCUAAGGCUGAAGAAAAAGAUGAAUUACUACACUUUUUCCAAAUUGUGACUGAUUCUCUCUUCUGGCUUUUGGGAGGCCAUGUUGAACUUAUUCAGAAUGUACUACAAAGUGAUCAUUUCUUACAUUUACUGCAAGCUGACAAUGUCCAAAUAGGAUCUGCAGUCAUGAUGAUGCUACAGAAUAUACUACAGAUCAACAGUGGUGAUUUACUCAGAAUAGGAAGAAAAGCCCUGUAUUCAAUUUUAGAUGAAGUUAUUUUCAAGCUUUUUUCAACUCCUAGUCCAGUUAUAAGAAGUACUGCUACAAAACUCCUACUGUUGAUGGCUGAAUCCCAUCAGGAAAUUUUGAUUUUACUGAGACAAAGUACCUGCUACAAAGGACUCAGACGUCUACUAAGUAAACAGGAAACUGGGACUGAAUUCAGUCAAGAACUUAGACAGCUUGUUGGCCUUUUAAGCCCAAUGGUCUAUCAGGAAGUAGAAGAGCAGAA2000000006ACUACAUCAAGCAGCAUGCUUGAUUCAAGCCUAUUGGAAGGGUUUUCAGACAAGAAAGAGAUUAAAGAAGCUUCCAUCUGCUGUGAUUGCUUUGCAGAGGAGUUUCAGAUCCAAACGAUCAAAGAUGUUGCUGGAGAUAAAUAGGCAGAAGGAAGAAGAGGACCUCAAAUUACAAUUGCAACUUCAAAGACAGAGAGCCAUGAGACUUUCCCGAGAAUUGCAGCUGAGUAUGCUCGAAAUAGUUCA2000000009UCCAGGUCAGGUGGAGAAACACUAUCGGGAAAUGGAAGAGAAAUCAGCACUGAUUAUCCAGAAACAUUGGAGAGGGUACAGGGAAAGGAAAAAUUUUCACCAACAGAGGCAGUCUCUCAUAGAGUAUAAAGCAGCUGUCACACUUCAAAGAGCAGCGCUUAAAUUCCUAGCGAAGUGCCGUAAGAAAAAGAAACUAUUUGCUCCUUGGCGAGGACUCCAAGAACUCACUGAUGCACGCCGAGUUGAACUGAAGAAACGAGUGGAUGACUAUGUCAGAAGACAUUUGGGCUCUCCAAUGUCAGAUGUGGUCAGUAGGGAGCUCCAUGCCCAAGCUCAAGAACGACUGCAACA2000000090CUACU2000000009UUAUGGGCAGGGCCCUAGAAGAGCGAGCCCAGCAGCACAGAGAAGCUCUGAUAGCACAGAUCAGCACCAACGUUGA2000000006ACAGCUAAUGAAGGCACCAAGUCUGAAGGAGGCAGAAGGGAAAGAACCUGAGCUCUUCCUAAGUAGAUCCAGGCCUGUGGCAGCCAAGGCCAAGCAGGCCCAUCUCACAACCCUGAAGCACAUACAAGCACCCUGGUGGAAGAAGCUUGGAGAAGAAUCUGGAGAUGAGAUUGAUGUUCCAAAGGAUGAGCUUAGUAUAGAAUUAGAAAAUUUAUUCAUUGGUGGAACCAA2000000006ACCACCUUAGUGAGUAACCCUAAGAAUUGACACAAAUCUCAUAUUUUAGGAGAUUAUAUUGGUUCUGCCUCUGGCAUGCUGGUAG2000000006ACUAGGGCCAUCCUA2000000006ACUUAUUAUUUUCCAGAGGUUCUCCUCCAGACAAGACCUGCAGUAAGCAAAGAGUUAUAUUCUACCUCUCUCUCAAUUUUCUUUUUCUUUUCUCUGUAUCCUCAUCGUUAGCCACACACAGAUUUGUGUGGCUUUUAUUGUAGAACUAAACUUAGCAUAGUGUUCUGUUGUUUACAUGAAGUGUGUUUUUCUUUGGUUUCUUCUGUUUUCCAACUAAAUAUUUUUUUCUAAAUAAAUAUUUUCAACAAUUGAUUUGAAAAAUUUGUCAGGAUUAUUUCAACUUUUCACAUUUGUUAUCUGAAAUUCCUAUUUCCUGUUA2000000006ACAUAGGAGGUGUGUGCAGACU2000000009UUAUUAAUGUGAGGAAAAGAAAUGCUCAAUUGAAGGACAUUUCCCUGUUUUCUAUAAAGCAAUGGUUGAACUCAUUUUCUAUUUUGUUAUUUCUAAAAGGAACUGCAUACCAAAAAAAUGCAUUCUUUCUAUUAAACUGUGAGAACUACAUAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 317 1075 1321 1672 1677 1753 1984 2069 2084 2403 2425
Modification Positions Y m6A Y Cm Y m6A m6A m6A m6A m6A Y
Genomic Coordinates 3:121828612:- 3:121795564:- 3:121790077:- 3:121772648:- 3:121772643:- 3:121772567:- 3:121770354:- 3:121770269:- 3:121770254:- 3:121769935:- 3:121769913:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
jaSvBXBkn3xs
YkSG92k4EHDM
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
BtsJQJ3DteUq
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
JkWoGWVwjNda
BtsJQJ3DteUq
iezFbUdmY3A6
JkWoGWVwjNda