RNA Type | tRNA |
---|---|
SOTerm | SO:0000267 |
Original Source | tdbR00000075 |
Secondary Structure | .(((((((..((((...........))))((((((.......)))))).......................((.((.......)).))))))))).... |
Sequence (UNICHARACTER ENCODING) | GCUUUUAUAGCUUAGDGGDAAAGCRAUAAAPUGAAKAPUUAUUUACAUGUAGUPCGAUUCUCAUUAAGGGCACCA |
Sequence (SHORT NAMES ENCODING) | GCUUUUAUAGCUUAGpDGGpDAAAGCpm2,2GAUAAApYUGAApm1GApYUUAUUUACAUGUAGUpYCGAUUCUCAUUAAGGGCACCA |
Sequence (MODOMICS CODE ENCODING) | GCUUUUAUAGCUUAG2000008551UGG2000008551UAAAGC2000022551GAUAAA2000009551UUGAA2000001551GA2000009551UUUAUUUACAUGUAGU2000009551UCGAUUCUCAUUAAGGGCACCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -GCUUUUAUAGCUUAGD--GGD--AAAGCRAUAAAPUGAAKAPUUAUUUACA-------------------UGUAGUPCGAUUCUCAUUAAGGGCACCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 16 | 20 | 26 | 32 | 37 | 39 | 55 |
---|---|---|---|---|---|---|---|
Position in the sequence | 16 | 19 | 25 | 31 | 36 | 38 | 54 |
Modification positions | D | D | m2,2G | Y | m1G | Y | Y |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS |
Position in the alignment | 16 | 20 | 26 | 32 | 37 | 39 | 55 |
---|---|---|---|---|---|---|---|
Position in the sequence | 16 | 19 | 25 | 31 | 36 | 38 | 54 |
Source: 6361519 | D | D | m2,2G | Y | m1G | Y | Y |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Source: 370774 | D | D | m2,2G | Y | m1G | Y | Y |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 |