Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000489642
Gene ID: ENSG00000198218
Gene Name: QRICH1
Sequence (UNICHARACTER ENCODING) GGAGUGGCUACAUGAAGUUCUGAAGGAUGUUCAGCCCCGGGUCACUCCACUUGGCUAUGUCUUGCCCAGCCACGUGACUGAGGAGAUGCUAUGGGAGUGCAAGCAGCUUGGGGCUCACUCCCCCPCCACCUUGCUGACCACCCUCAUGUUCUPUAAUACCAAGUAAGUGUUCUAGAGGCUCCACUGCUGGCAUCUGUCCAGUGAAGAGUGUGGAAGCUAUCCAAGAGGCCUUCUGAAUUCCUCUGACAUAUAUUUGAGAAACUGGGCUACUGAAAGCCCUAACCCCACUUGGCUGCAUUUUAUUUGGUAACCAGUGAGGCAAACACCCUUGCCAGACCCCUACCAUCCAUCUUGAUGUGGUUCCUGCACUGGЖCACUGCUUGGGUACGGGCCUGCCCAGAUCUUGGGAAUGUGGGCAGUGGCUCCUCUGAAGCACCAGUGGGCAGAGGAUGAGUCAUGGUAUCCUCCCGGCACCCCUCCCUCUGCCUUGCAUUUUACUUGUGAUCCAGGUACUUCCUAUUGAAGЖCAGUGGACCAGCACAUGAAGCUGGCCUUCUCCAAGGUCUUGCGACAGACAAAGAAGAACCCCUCUAAUCCCAAGGAUAAAAGCACGAGUAUCCGGUACUUGAAGGCCCUUGGAAUACACCAGACUGGCCAGAAAGUUACAGAUGACAUGUAUGCAGAACAGACGGAAAAUCCAGAGAAUCCAUUGAGAUGUCCCAUCAAGCUCUAUGAUUUCUACCUCUUCAAAUGCCCCCAGAGUGUGAAAGGCCGGAAUGACACCUUUUACCUGACACCUGAGCCAGUGGUGGCCCCCAACAGCCCAAUCUGGUACUCAGUCCAGCCUAUCAGCAGAGAGCAGAUGGGACAAAUGCUGACGCGGAUCCUGGUGAUAAGAGAAAUUCAGGAGGCCAUCGCAGUGGCCAAUGCAAGCACUAUGCACUGAGAUGCCUUGGCCAUGGCACAAGAGAAACCAGCCAGGAAAAACCAGACAGЖCUUUCACACUAAAGAAGAGGCCUCCAU
Sequence (SHORT NAMES ENCODING) GGAGUGGCUACAUGAAGUUCUGAAGGAUGUUCAGCCCCGGGUCACUCCACUUGGCUAUGUCUUGCCCAGCCACGUGACUGAGGAGAUGCUAUGGGAGUGCAAGCAGCUUGGGGCUCACUCCCCCYCCACCUUGCUGACCACCCUCAUGUUCUYUAAUACCAAGUAAGUGUUCUAGAGGCUCCACUGCUGGCAUCUGUCCAGUGAAGAGUGUGGAAGCUAUCCAAGAGGCCUUCUGAAUUCCUCUGACAUAUAUUUGAGAAACUGGGCUACUGAAAGCCCUAACCCCACUUGGCUGCAUUUUAUUUGGUAACCAGUGAGGCAAACACCCUUGCCAGACCCCUACCAUCCAUCUUGAUGUGGUUCCUGCACUGGm6ACACUGCUUGGGUACGGGCCUGCCCAGAUCUUGGGAAUGUGGGCAGUGGCUCCUCUGAAGCACCAGUGGGCAGAGGAUGAGUCAUGGUAUCCUCCCGGCACCCCUCCCUCUGCCUUGCAUUUUACUUGUGAUCCAGGUACUUCCUAUUGAAGm6ACAGUGGACCAGCACAUGAAGCUGGCCUUCUCCAAGGUCUUGCGACAGACAAAGAAGAACCCCUCUAAUCCCAAGGAUAAAAGCACGAGUAUCCGGUACUUGAAGGCCCUUGGAAUACACCAGACUGGCCAGAAAGUUACAGAUGACAUGUAUGCAGAACAGACGGAAAAUCCAGAGAAUCCAUUGAGAUGUCCCAUCAAGCUCUAUGAUUUCUACCUCUUCAAAUGCCCCCAGAGUGUGAAAGGCCGGAAUGACACCUUUUACCUGACACCUGAGCCAGUGGUGGCCCCCAACAGCCCAAUCUGGUACUCAGUCCAGCCUAUCAGCAGAGAGCAGAUGGGACAAAUGCUGACGCGGAUCCUGGUGAUAAGAGAAAUUCAGGAGGCCAUCGCAGUGGCCAAUGCAAGCACUAUGCACUGAGAUGCCUUGGCCAUGGCACAAGAGAAACCAGCCAGGAAAAACCAGACAGm6ACUUUCACACUAAAGAAGAGGCCUCCAU
Sequence (MODOMICS CODE ENCODING) GGAGUGGCUACAUGAAGUUCUGAAGGAUGUUCAGCCCCGGGUCACUCCACUUGGCUAUGUCUUGCCCAGCCACGUGACUGAGGAGAUGCUAUGGGAGUGCAAGCAGCUUGGGGCUCACUCCCCC2000000009UCCACCUUGCUGACCACCCUCAUGUUCU2000000009UUAAUACCAAGUAAGUGUUCUAGAGGCUCCACUGCUGGCAUCUGUCCAGUGAAGAGUGUGGAAGCUAUCCAAGAGGCCUUCUGAAUUCCUCUGACAUAUAUUUGAGAAACUGGGCUACUGAAAGCCCUAACCCCACUUGGCUGCAUUUUAUUUGGUAACCAGUGAGGCAAACACCCUUGCCAGACCCCUACCAUCCAUCUUGAUGUGGUUCCUGCACUGG2000000006ACACUGCUUGGGUACGGGCCUGCCCAGAUCUUGGGAAUGUGGGCAGUGGCUCCUCUGAAGCACCAGUGGGCAGAGGAUGAGUCAUGGUAUCCUCCCGGCACCCCUCCCUCUGCCUUGCAUUUUACUUGUGAUCCAGGUACUUCCUAUUGAAG2000000006ACAGUGGACCAGCACAUGAAGCUGGCCUUCUCCAAGGUCUUGCGACAGACAAAGAAGAACCCCUCUAAUCCCAAGGAUAAAAGCACGAGUAUCCGGUACUUGAAGGCCCUUGGAAUACACCAGACUGGCCAGAAAGUUACAGAUGACAUGUAUGCAGAACAGACGGAAAAUCCAGAGAAUCCAUUGAGAUGUCCCAUCAAGCUCUAUGAUUUCUACCUCUUCAAAUGCCCCCAGAGUGUGAAAGGCCGGAAUGACACCUUUUACCUGACACCUGAGCCAGUGGUGGCCCCCAACAGCCCAAUCUGGUACUCAGUCCAGCCUAUCAGCAGAGAGCAGAUGGGACAAAUGCUGACGCGGAUCCUGGUGAUAAGAGAAAUUCAGGAGGCCAUCGCAGUGGCCAAUGCAAGCACUAUGCACUGAGAUGCCUUGGCCAUGGCACAAGAGAAACCAGCCAGGAAAAACCAGACAG2000000006ACUUUCACACUAAAGAAGAGGCCUCCAU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 125 153 373 525 994
Modification Positions Y Y m6A m6A m6A
Genomic Coordinates 3:49033157:- 3:49033129:- 3:49032909:- 3:49032757:- 3:49030402:-
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
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Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
6UuHp6YApVKv
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UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
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BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
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VL7zkHvkfkoB
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D6ncpa2PPWj3
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BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8