Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000319792
Gene ID: ENSG00000177707
Gene Name: NECTIN3
Sequence (UNICHARACTER ENCODING) GGCCAAGUGUCAGCCGGCAGCGACGGCGCUAGAGCUGGGAGCUGGGGACGCGCGCGCCGGACCUUCCACAGCCUCCGCCCAGAGCCUGAGGCGCCGGGGCCGGGGGAGCCGGGGGGCGGGCGGGCGAGCGGGCCGGGGGGAGGGUGGGGGAUGGCGCGGACCCUGCGGCCGUCCCCGCUGUGUCCUGGAGGCGGCAAAGCACAACUUUCCUCCGCUUCUCUCCUCGGAGCCGGGCUCCUGCUGCAGCCCCCGACGCCACCUCCGCUGCUGCUGCUGCUCUUCCCGCUGCUGCUCUUCUCCAGGCUCUGUGGUGCCUUAGCUGGACCAAUUAUUGUGGAGCCACAUGUCACAGCAGUAUGGGGAAAGAAUGUUUCAUUAAAGUGUUUAAUUGAAGUAAAUGAAACCAUAACACAGAUUUCAUGGGAGAAGAUACAUGGCAAAAGUUCACAGЖCUGUUGCAGUUCACCAUCCCCAAUAUGGAUUCUCUGUUCAAGGAGAAUAUCAGGGAAGAGUCUUGUUUAAAAAUUACUCACUUAAUGAUGCAACAAUUACUCUGCAUAACAUAGGAUUCUCUGAUUCUGGAAAAUACAUCUGCAAAGCUGUUACAUUCCCGCUUGGAAAUGCCCAGUCCUCUACAACUGUAACUGUGUUAGUUGAACCCACUGUGAGCCUGAUAAAAGGGCCAGAUUCUUUAAUUGAUGGAGGAAAUGAAACAGUAGCAGCCAUUUGCAUCGCAGCCACUGGAAAACCCGUUGCACAUAUUGACUGGGAAGGUGAUCUUGGUGAAAUGGAAUCCACUACAACUUCUUUUCCAAAUGAAACGGCAACGAUUAUCAGCCAGUACAAGCUAUUUCCAACCAGAUUUGCUAGAGGAAGGCGAAUUACUUGUGUUGUAAAACAUCCAGCCUUGGAAAAGGACAUCCGAUACUCUUUCAUAUUAGACAUACAGUAUGCUCCUGAAGUUUCGGUAACAGGAUAUGAUGGAAAUUGGUUUGUAGGAAGAAAAGGUGUUAAUCUCAAAUGUAAUGCUGAUGCAAAUCCACCACCCUUCAAAUCUGUGUGGAGCAGGUUGGAUGGACAAUGGCCUGAUGGUUUAUUGGCUUCAGACAAUACUCUUCAUUUUGUCCAUCCAUUGACUUUCAAUUAUUCUGGUGUUUAUAUCUGUAAAGUGACCAAUUCCCUUGGUCAAAGAAGUGACCAAAAAGUCAUCUACAUUUCAGCCUACAAUUCAGUGGCAUCCCUCAACUGCUGACAUCGAGGAUCUAGCAACAGAACCUAAAAAAUUGCCCUUCCCAUUGUCAACUUUGGCAACAAUUAAGGAUGACACAAUUGCCACGAUCAUUGCUAGUGUAGUGGGUGGGGCUCUCUUCAUAGUACUUGUAAGUGUUUUGGCUGGAAUAUUCUGCUAUAGGAGAAGACGGЖCGUUUCGUGGAGACUACUUUGCCAAGAЖCUACAUUCCACCAUCAGAUAUGCAAAAAGAAUCACAAAUAGAUGUUCUUCAACAAGAUGAGCUUGAUUCUUACCCAGЖCAGUGUAAAAAAAGAAAACAAA
Sequence (SHORT NAMES ENCODING) GGCCAAGUGUCAGCCGGCAGCGACGGCGCUAGAGCUGGGAGCUGGGGACGCGCGCGCCGGACCUUCCACAGCCUCCGCCCAGAGCCUGAGGCGCCGGGGCCGGGGGAGCCGGGGGGCGGGCGGGCGAGCGGGCCGGGGGGAGGGUGGGGGAUGGCGCGGACCCUGCGGCCGUCCCCGCUGUGUCCUGGAGGCGGCAAAGCACAACUUUCCUCCGCUUCUCUCCUCGGAGCCGGGCUCCUGCUGCAGCCCCCGACGCCACCUCCGCUGCUGCUGCUGCUCUUCCCGCUGCUGCUCUUCUCCAGGCUCUGUGGUGCCUUAGCUGGACCAAUUAUUGUGGAGCCACAUGUCACAGCAGUAUGGGGAAAGAAUGUUUCAUUAAAGUGUUUAAUUGAAGUAAAUGAAACCAUAACACAGAUUUCAUGGGAGAAGAUACAUGGCAAAAGUUCACAGm6ACUGUUGCAGUUCACCAUCCCCAAUAUGGAUUCUCUGUUCAAGGAGAAUAUCAGGGAAGAGUCUUGUUUAAAAAUUACUCACUUAAUGAUGCAACAAUUACUCUGCAUAACAUAGGAUUCUCUGAUUCUGGAAAAUACAUCUGCAAAGCUGUUACAUUCCCGCUUGGAAAUGCCCAGUCCUCUACAACUGUAACUGUGUUAGUUGAACCCACUGUGAGCCUGAUAAAAGGGCCAGAUUCUUUAAUUGAUGGAGGAAAUGAAACAGUAGCAGCCAUUUGCAUCGCAGCCACUGGAAAACCCGUUGCACAUAUUGACUGGGAAGGUGAUCUUGGUGAAAUGGAAUCCACUACAACUUCUUUUCCAAAUGAAACGGCAACGAUUAUCAGCCAGUACAAGCUAUUUCCAACCAGAUUUGCUAGAGGAAGGCGAAUUACUUGUGUUGUAAAACAUCCAGCCUUGGAAAAGGACAUCCGAUACUCUUUCAUAUUAGACAUACAGUAUGCUCCUGAAGUUUCGGUAACAGGAUAUGAUGGAAAUUGGUUUGUAGGAAGAAAAGGUGUUAAUCUCAAAUGUAAUGCUGAUGCAAAUCCACCACCCUUCAAAUCUGUGUGGAGCAGGUUGGAUGGACAAUGGCCUGAUGGUUUAUUGGCUUCAGACAAUACUCUUCAUUUUGUCCAUCCAUUGACUUUCAAUUAUUCUGGUGUUUAUAUCUGUAAAGUGACCAAUUCCCUUGGUCAAAGAAGUGACCAAAAAGUCAUCUACAUUUCAGCCUACAAUUCAGUGGCAUCCCUCAACUGCUGACAUCGAGGAUCUAGCAACAGAACCUAAAAAAUUGCCCUUCCCAUUGUCAACUUUGGCAACAAUUAAGGAUGACACAAUUGCCACGAUCAUUGCUAGUGUAGUGGGUGGGGCUCUCUUCAUAGUACUUGUAAGUGUUUUGGCUGGAAUAUUCUGCUAUAGGAGAAGACGGm6ACGUUUCGUGGAGACUACUUUGCCAAGAm6ACUACAUUCCACCAUCAGAUAUGCAAAAAGAAUCACAAAUAGAUGUUCUUCAACAAGAUGAGCUUGAUUCUUACCCAGm6ACAGUGUAAAAAAAGAAAACAAA
Sequence (MODOMICS CODE ENCODING) GGCCAAGUGUCAGCCGGCAGCGACGGCGCUAGAGCUGGGAGCUGGGGACGCGCGCGCCGGACCUUCCACAGCCUCCGCCCAGAGCCUGAGGCGCCGGGGCCGGGGGAGCCGGGGGGCGGGCGGGCGAGCGGGCCGGGGGGAGGGUGGGGGAUGGCGCGGACCCUGCGGCCGUCCCCGCUGUGUCCUGGAGGCGGCAAAGCACAACUUUCCUCCGCUUCUCUCCUCGGAGCCGGGCUCCUGCUGCAGCCCCCGACGCCACCUCCGCUGCUGCUGCUGCUCUUCCCGCUGCUGCUCUUCUCCAGGCUCUGUGGUGCCUUAGCUGGACCAAUUAUUGUGGAGCCACAUGUCACAGCAGUAUGGGGAAAGAAUGUUUCAUUAAAGUGUUUAAUUGAAGUAAAUGAAACCAUAACACAGAUUUCAUGGGAGAAGAUACAUGGCAAAAGUUCACAG2000000006ACUGUUGCAGUUCACCAUCCCCAAUAUGGAUUCUCUGUUCAAGGAGAAUAUCAGGGAAGAGUCUUGUUUAAAAAUUACUCACUUAAUGAUGCAACAAUUACUCUGCAUAACAUAGGAUUCUCUGAUUCUGGAAAAUACAUCUGCAAAGCUGUUACAUUCCCGCUUGGAAAUGCCCAGUCCUCUACAACUGUAACUGUGUUAGUUGAACCCACUGUGAGCCUGAUAAAAGGGCCAGAUUCUUUAAUUGAUGGAGGAAAUGAAACAGUAGCAGCCAUUUGCAUCGCAGCCACUGGAAAACCCGUUGCACAUAUUGACUGGGAAGGUGAUCUUGGUGAAAUGGAAUCCACUACAACUUCUUUUCCAAAUGAAACGGCAACGAUUAUCAGCCAGUACAAGCUAUUUCCAACCAGAUUUGCUAGAGGAAGGCGAAUUACUUGUGUUGUAAAACAUCCAGCCUUGGAAAAGGACAUCCGAUACUCUUUCAUAUUAGACAUACAGUAUGCUCCUGAAGUUUCGGUAACAGGAUAUGAUGGAAAUUGGUUUGUAGGAAGAAAAGGUGUUAAUCUCAAAUGUAAUGCUGAUGCAAAUCCACCACCCUUCAAAUCUGUGUGGAGCAGGUUGGAUGGACAAUGGCCUGAUGGUUUAUUGGCUUCAGACAAUACUCUUCAUUUUGUCCAUCCAUUGACUUUCAAUUAUUCUGGUGUUUAUAUCUGUAAAGUGACCAAUUCCCUUGGUCAAAGAAGUGACCAAAAAGUCAUCUACAUUUCAGCCUACAAUUCAGUGGCAUCCCUCAACUGCUGACAUCGAGGAUCUAGCAACAGAACCUAAAAAAUUGCCCUUCCCAUUGUCAACUUUGGCAACAAUUAAGGAUGACACAAUUGCCACGAUCAUUGCUAGUGUAGUGGGUGGGGCUCUCUUCAUAGUACUUGUAAGUGUUUUGGCUGGAAUAUUCUGCUAUAGGAGAAGACGG2000000006ACGUUUCGUGGAGACUACUUUGCCAAGA2000000006ACUACAUUCCACCAUCAGAUAUGCAAAAAGAAUCACAAAUAGAUGUUCUUCAACAAGAUGAGCUUGAUUCUUACCCAG2000000006ACAGUGUAAAAAAAGAAAACAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 451 1421 1449 1527
Modification Positions m6A m6A m6A m6A
Genomic Coordinates 3:111112170:+ 3:111133862:+ 3:111133890:+ 3:111133968:+
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
QmcpiJ88DBDn
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
nfCHyrYzE6fB
Lny8GcCeVGc9
UKen6WEino9G
Yfn77uLS5tv8
6UuHp6YApVKv
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
BsCW7emuRX7M
Lny8GcCeVGc9
UKen6WEino9G
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
UKen6WEino9G
XUkp6ghERQML
Yfn77uLS5tv8
93arJtwJmuS9
BkoLW2CBToyL
nfCHyrYzE6fB
Lny8GcCeVGc9
bXBqJigD9oV3
Yfn77uLS5tv8