General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000249910
Gene ID:	ENSG00000129071
Gene Name:	MBD4
Sequence (UNICHARACTER ENCODING)	GGCGGCUGUAGCCGAGGGGGCGGCCGGAAAGCAGCGGCGGCGUCUGGGGCGCUUUCGCAACAUUCAGACCUCGGUUGCAGCCCGGUGCCGUGAGCUGAAGAGGUUUCACAUCUUACUCCGCCCCACACCCUGGGCGUUGCGGCGCUGGGCUCGUUGCUGCAGCCGGACCCUGCUCGAUGGGCACGACUGGGCUGGAGAGUCUGAGUCUGGGGGACCGCGGAGCUGCCCCCACCGUCACCUCUAGUGAGCGCCUAGUCCCAGACCCGCCGAAUGACCUCCGCAAAGAAGAUGUUGCUAUGGAAUUGGAAAGAGUGGGAGAAGAUGAGGAACAAAUGAUGAUAAAAAGAAGCAGUGAAUGUAAUCCCUUGCUACAAGAACCCAUCGCUUCUGCUCAGUUUGGUGCUACUGCAGGAACAGAAUGCCGUAAGUCUGUCCCAUGUGGAUGGGAAAGAGUUGUGAAGCAAAGGUUAUUUGGGAAGACAGCAGGAAGAUUUGAUGUGUACUPUAUCAGCCCACAAGGЖCUGAAGUUCAGAUCCAAAAGUUCACUUGCUAAUUAUCUUCACAAAAAUGGAGAGЖCUUCUCUUAAGCCAGAAGAUUUUGAUUUUACUGUACUUUCUAAAAGGGGUAUCAAGUCAAGAUAUAAAGЖCUGCAGCAUGGCAGCCCUGACAPCCCAUCUACAAAACCAAAGUAACAAUUCAAACUGGAACCUCAGGACCCGAAGCAAGUGCAAAAAGGAUGUGUUUAUGCCGCCAAGUAGUAGUUCAGAGUUGCAGGAGAGCAGAGGЖCUCUCUAЖCUPUACUUCCACUCAUUUGCUUUUGAAAGAAGAUGAGGGUGUUGAUGAUGUUAЖCUUCAGAAAGGUUAGAAAGCCCAAAGGAAAGGUGACUAUUUUGAAAGGAAUCCCAAUUAAGAAAACUAAAAAAGGAUGUAGGAAGAGCUGUUCAGGUUUUGUUCAAAGUGAUAGCAAAAGAGAAUCUGUGUGUAAUAAAGCAGAUGCUGAAAGUGAACCUGUUGCACAAAAAAGUCAGCUUGAUAGAЖCUGUCUGCAUUUCUGAUGCUGGAGCAUGUGGUGAGACCCUCAGUGUGACCAGUGAAGAAAACAGCCUUGUAAAAAAAAAAGAAAGAUCAUUGAGUUCAGGAUCAAAUUUUUGUUCUGAACAAAAAACUUCUGGCAUCAUAAACAAAUUUUGUUCAGCCAAAGЖCUCAGAACACAACGAGAAGUAUGAGGAUACCUUUUUAGAAUCUGAAGAAAUCGGAACAAAAGUAGAAGUUGUGGAAAGGAAAGAACAUUUGCAUACUGACAUUUUAAAACGUGGCUCUGAAAUGGACAACAACUGCUCACCAACCAGGAAAGACUUCACUGGUGAGAAAAUAUUUCAAGAAGAUACCAUCCCACGAACACAGAUAGAAAGAAGGAAAACAAGCCUGUAUUUUUCCAGCAAAUAUAACAAAGAAGCUCUUAGCCCCCCACGACGUAAAGCCUPUAAGAAAUGGACACCPCCUCGGUCACCUUUUAAUCUCGUUCAAGAAACACUUUUUCAUGAUCCAUGGAAGCUUCUCAUCGCUACUAUAUUUCUCAAUCGGЖCCUCAGGCAAAAUGGCAAUACCUGUGCUUUGGAAGUUUCUGGAGAAGUAUCCUUCAGCUGAGGUAGCAAGAACCGCAGACUGGAGAGAUGUGUCAGAACUUCUUAAACCUCUUGGUCUCUACGAUCUUCGGGCAAAAACCAUUGUCAAGUUCUCAGAUGAAUACCUGACAAAGCAGUGGAAGUAUCCAAUUGAGCUUCAUGGGAUUGGUAAAUAUGGCAACGACUCUUACCGAAUUUUUUGUGUCAAUGAGUGGAAGCAGGUGCACCCUGAAGACCACAAAUUAAAUAAAUAUCAUGACUGGCUUUGGGAAAAUCAUGAAAAAUUAAGUCUAUCUUAAACUCUGCAGCUUUCAAGCUCAUCUGUUAUGCAUAGCUUUGCACUUCAAAAAAGCUUAAUUAAGUACЖACCAACCACCUUUCCAGCCAUAGAGAUUUUAAUUAGCCCAACUAGAAGCCUAGUGUGUGUGCUUUCUUAAUGUGUGUGCCAAUGGUGGAUCUUUGCUACUGAAUGUGUUUGAACAUGUUUUGAGAUUUUUUUAAAAUAAAUUAUUAUUUGACAACAAUCCAAAAAAAAUACGGCUUUUCCAAUGAUGAAAUAUAAUCAGAAGAUGAAAAAUAGUUCUAAACUAUCAAUAAUACAAAGCAAAUUUCUAUCAGCCUUGCUAAAGCUAGGGGCCCACUAAAUAUUUUUAUCGGCUAGGCGUGGUGGUGCAUGCCUGUAAUCUCGGAAGGCUGAGGCAGGAGGAUCAUUUGAGCUCAUGAGGGCCCAGGAGGUCAAGGCUUCAGUGAGCCAUGAUCAUGCCACUGCACUCCAGUCUGGAUGACAGAGAGAGACCCUGUCUCAAAAAAUAUAUAUUUAAAAAAUAAAAAUAAAAGCUGACCCCAAAGAC
Sequence (SHORT NAMES ENCODING)	GGCGGCUGUAGCCGAGGGGGCGGCCGGAAAGCAGCGGCGGCGUCUGGGGCGCUUUCGCAACAUUCAGACCUCGGUUGCAGCCCGGUGCCGUGAGCUGAAGAGGUUUCACAUCUUACUCCGCCCCACACCCUGGGCGUUGCGGCGCUGGGCUCGUUGCUGCAGCCGGACCCUGCUCGAUGGGCACGACUGGGCUGGAGAGUCUGAGUCUGGGGGACCGCGGAGCUGCCCCCACCGUCACCUCUAGUGAGCGCCUAGUCCCAGACCCGCCGAAUGACCUCCGCAAAGAAGAUGUUGCUAUGGAAUUGGAAAGAGUGGGAGAAGAUGAGGAACAAAUGAUGAUAAAAAGAAGCAGUGAAUGUAAUCCCUUGCUACAAGAACCCAUCGCUUCUGCUCAGUUUGGUGCUACUGCAGGAACAGAAUGCCGUAAGUCUGUCCCAUGUGGAUGGGAAAGAGUUGUGAAGCAAAGGUUAUUUGGGAAGACAGCAGGAAGAUUUGAUGUGUACUYUAUCAGCCCACAAGGm6ACUGAAGUUCAGAUCCAAAAGUUCACUUGCUAAUUAUCUUCACAAAAAUGGAGAGm6ACUUCUCUUAAGCCAGAAGAUUUUGAUUUUACUGUACUUUCUAAAAGGGGUAUCAAGUCAAGAUAUAAAGm6ACUGCAGCAUGGCAGCCCUGACAYCCCAUCUACAAAACCAAAGUAACAAUUCAAACUGGAACCUCAGGACCCGAAGCAAGUGCAAAAAGGAUGUGUUUAUGCCGCCAAGUAGUAGUUCAGAGUUGCAGGAGAGCAGAGGm6ACUCUCUAm6ACUYUACUUCCACUCAUUUGCUUUUGAAAGAAGAUGAGGGUGUUGAUGAUGUUAm6ACUUCAGAAAGGUUAGAAAGCCCAAAGGAAAGGUGACUAUUUUGAAAGGAAUCCCAAUUAAGAAAACUAAAAAAGGAUGUAGGAAGAGCUGUUCAGGUUUUGUUCAAAGUGAUAGCAAAAGAGAAUCUGUGUGUAAUAAAGCAGAUGCUGAAAGUGAACCUGUUGCACAAAAAAGUCAGCUUGAUAGAm6ACUGUCUGCAUUUCUGAUGCUGGAGCAUGUGGUGAGACCCUCAGUGUGACCAGUGAAGAAAACAGCCUUGUAAAAAAAAAAGAAAGAUCAUUGAGUUCAGGAUCAAAUUUUUGUUCUGAACAAAAAACUUCUGGCAUCAUAAACAAAUUUUGUUCAGCCAAAGm6ACUCAGAACACAACGAGAAGUAUGAGGAUACCUUUUUAGAAUCUGAAGAAAUCGGAACAAAAGUAGAAGUUGUGGAAAGGAAAGAACAUUUGCAUACUGACAUUUUAAAACGUGGCUCUGAAAUGGACAACAACUGCUCACCAACCAGGAAAGACUUCACUGGUGAGAAAAUAUUUCAAGAAGAUACCAUCCCACGAACACAGAUAGAAAGAAGGAAAACAAGCCUGUAUUUUUCCAGCAAAUAUAACAAAGAAGCUCUUAGCCCCCCACGACGUAAAGCCUYUAAGAAAUGGACACCYCCUCGGUCACCUUUUAAUCUCGUUCAAGAAACACUUUUUCAUGAUCCAUGGAAGCUUCUCAUCGCUACUAUAUUUCUCAAUCGGm6ACCUCAGGCAAAAUGGCAAUACCUGUGCUUUGGAAGUUUCUGGAGAAGUAUCCUUCAGCUGAGGUAGCAAGAACCGCAGACUGGAGAGAUGUGUCAGAACUUCUUAAACCUCUUGGUCUCUACGAUCUUCGGGCAAAAACCAUUGUCAAGUUCUCAGAUGAAUACCUGACAAAGCAGUGGAAGUAUCCAAUUGAGCUUCAUGGGAUUGGUAAAUAUGGCAACGACUCUUACCGAAUUUUUUGUGUCAAUGAGUGGAAGCAGGUGCACCCUGAAGACCACAAAUUAAAUAAAUAUCAUGACUGGCUUUGGGAAAAUCAUGAAAAAUUAAGUCUAUCUUAAACUCUGCAGCUUUCAAGCUCAUCUGUUAUGCAUAGCUUUGCACUUCAAAAAAGCUUAAUUAAGUACm6AACCAACCACCUUUCCAGCCAUAGAGAUUUUAAUUAGCCCAACUAGAAGCCUAGUGUGUGUGCUUUCUUAAUGUGUGUGCCAAUGGUGGAUCUUUGCUACUGAAUGUGUUUGAACAUGUUUUGAGAUUUUUUUAAAAUAAAUUAUUAUUUGACAACAAUCCAAAAAAAAUACGGCUUUUCCAAUGAUGAAAUAUAAUCAGAAGAUGAAAAAUAGUUCUAAACUAUCAAUAAUACAAAGCAAAUUUCUAUCAGCCUUGCUAAAGCUAGGGGCCCACUAAAUAUUUUUAUCGGCUAGGCGUGGUGGUGCAUGCCUGUAAUCUCGGAAGGCUGAGGCAGGAGGAUCAUUUGAGCUCAUGAGGGCCCAGGAGGUCAAGGCUUCAGUGAGCCAUGAUCAUGCCACUGCACUCCAGUCUGGAUGACAGAGAGAGACCCUGUCUCAAAAAAUAUAUAUUUAAAAAAUAAAAAUAAAAGCUGACCCCAAAGAC
Sequence (MODOMICS CODE ENCODING)	GGCGGCUGUAGCCGAGGGGGCGGCCGGAAAGCAGCGGCGGCGUCUGGGGCGCUUUCGCAACAUUCAGACCUCGGUUGCAGCCCGGUGCCGUGAGCUGAAGAGGUUUCACAUCUUACUCCGCCCCACACCCUGGGCGUUGCGGCGCUGGGCUCGUUGCUGCAGCCGGACCCUGCUCGAUGGGCACGACUGGGCUGGAGAGUCUGAGUCUGGGGGACCGCGGAGCUGCCCCCACCGUCACCUCUAGUGAGCGCCUAGUCCCAGACCCGCCGAAUGACCUCCGCAAAGAAGAUGUUGCUAUGGAAUUGGAAAGAGUGGGAGAAGAUGAGGAACAAAUGAUGAUAAAAAGAAGCAGUGAAUGUAAUCCCUUGCUACAAGAACCCAUCGCUUCUGCUCAGUUUGGUGCUACUGCAGGAACAGAAUGCCGUAAGUCUGUCCCAUGUGGAUGGGAAAGAGUUGUGAAGCAAAGGUUAUUUGGGAAGACAGCAGGAAGAUUUGAUGUGUACU2000000009UUAUCAGCCCACAAGG2000000006ACUGAAGUUCAGAUCCAAAAGUUCACUUGCUAAUUAUCUUCACAAAAAUGGAGAG2000000006ACUUCUCUUAAGCCAGAAGAUUUUGAUUUUACUGUACUUUCUAAAAGGGGUAUCAAGUCAAGAUAUAAAG2000000006ACUGCAGCAUGGCAGCCCUGACA2000000009UCCCAUCUACAAAACCAAAGUAACAAUUCAAACUGGAACCUCAGGACCCGAAGCAAGUGCAAAAAGGAUGUGUUUAUGCCGCCAAGUAGUAGUUCAGAGUUGCAGGAGAGCAGAGG2000000006ACUCUCUA2000000006ACU2000000009UUACUUCCACUCAUUUGCUUUUGAAAGAAGAUGAGGGUGUUGAUGAUGUUA2000000006ACUUCAGAAAGGUUAGAAAGCCCAAAGGAAAGGUGACUAUUUUGAAAGGAAUCCCAAUUAAGAAAACUAAAAAAGGAUGUAGGAAGAGCUGUUCAGGUUUUGUUCAAAGUGAUAGCAAAAGAGAAUCUGUGUGUAAUAAAGCAGAUGCUGAAAGUGAACCUGUUGCACAAAAAAGUCAGCUUGAUAGA2000000006ACUGUCUGCAUUUCUGAUGCUGGAGCAUGUGGUGAGACCCUCAGUGUGACCAGUGAAGAAAACAGCCUUGUAAAAAAAAAAGAAAGAUCAUUGAGUUCAGGAUCAAAUUUUUGUUCUGAACAAAAAACUUCUGGCAUCAUAAACAAAUUUUGUUCAGCCAAAG2000000006ACUCAGAACACAACGAGAAGUAUGAGGAUACCUUUUUAGAAUCUGAAGAAAUCGGAACAAAAGUAGAAGUUGUGGAAAGGAAAGAACAUUUGCAUACUGACAUUUUAAAACGUGGCUCUGAAAUGGACAACAACUGCUCACCAACCAGGAAAGACUUCACUGGUGAGAAAAUAUUUCAAGAAGAUACCAUCCCACGAACACAGAUAGAAAGAAGGAAAACAAGCCUGUAUUUUUCCAGCAAAUAUAACAAAGAAGCUCUUAGCCCCCCACGACGUAAAGCCU2000000009UUAAGAAAUGGACACC2000000009UCCUCGGUCACCUUUUAAUCUCGUUCAAGAAACACUUUUUCAUGAUCCAUGGAAGCUUCUCAUCGCUACUAUAUUUCUCAAUCGG2000000006ACCUCAGGCAAAAUGGCAAUACCUGUGCUUUGGAAGUUUCUGGAGAAGUAUCCUUCAGCUGAGGUAGCAAGAACCGCAGACUGGAGAGAUGUGUCAGAACUUCUUAAACCUCUUGGUCUCUACGAUCUUCGGGCAAAAACCAUUGUCAAGUUCUCAGAUGAAUACCUGACAAAGCAGUGGAAGUAUCCAAUUGAGCUUCAUGGGAUUGGUAAAUAUGGCAACGACUCUUACCGAAUUUUUUGUGUCAAUGAGUGGAAGCAGGUGCACCCUGAAGACCACAAAUUAAAUAAAUAUCAUGACUGGCUUUGGGAAAAUCAUGAAAAAUUAAGUCUAUCUUAAACUCUGCAGCUUUCAAGCUCAUCUGUUAUGCAUAGCUUUGCACUUCAAAAAAGCUUAAUUAAGUAC2000000006AACCAACCACCUUUCCAGCCAUAGAGAUUUUAAUUAGCCCAACUAGAAGCCUAGUGUGUGUGCUUUCUUAAUGUGUGUGCCAAUGGUGGAUCUUUGCUACUGAAUGUGUUUGAACAUGUUUUGAGAUUUUUUUAAAAUAAAUUAUUAUUUGACAACAAUCCAAAAAAAAUACGGCUUUUCCAAUGAUGAAAUAUAAUCAGAAGAUGAAAAAUAGUUCUAAACUAUCAAUAAUACAAAGCAAAUUUCUAUCAGCCUUGCUAAAGCUAGGGGCCCACUAAAUAUUUUUAUCGGCUAGGCGUGGUGGUGCAUGCCUGUAAUCUCGGAAGGCUGAGGCAGGAGGAUCAUUUGAGCUCAUGAGGGCCCAGGAGGUCAAGGCUUCAGUGAGCCAUGAUCAUGCCACUGCACUCCAGUCUGGAUGACAGAGAGAGACCCUGUCUCAAAAAAUAUAUAUUUAAAAAAUAAAAAUAAAAGCUGACCCCAAAGAC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	505	521	576	646	669	785	793	796	847	1035	1198	1480	1496	1581	1986
Modification Positions	Y	m6A	m6A	m6A	Y	m6A	m6A	Y	m6A	m6A	m6A	Y	Y	m6A	m6A
Genomic Coordinates	3:129437726:-	3:129437299:-	3:129437244:-	3:129437174:-	3:129437151:-	3:129437035:-	3:129437027:-	3:129437024:-	3:129436973:-	3:129436785:-	3:129436622:-	3:129433957:-	3:129433941:-	3:129433856:-	3:129431434:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	6UuHp6YApVKv Ap2q43bQLNek gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U ArijeGVTwYBw BsCW7emuRX7M Lny8GcCeVGc9 XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL 93arJtwJmuS9 KTLz8piFYdwC BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi BtsJQJ3DteUq dknfVe6BK8aP	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	5aTkEfEpX8Xm 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	4HMi5ykupT9V msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	4HMi5ykupT9V 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	6UuHp6YApVKv NjZ8bGGJsNSR aJksAshEgQ8U D6ncpa2PPWj3 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY