General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000704535
Gene ID:	ENSG00000144815
Gene Name:	NXPE3
Sequence (UNICHARACTER ENCODING)	GUCGCCGGGUGAGGAAGCGGGGGGCUAGCGGCCUGGCGCUGCGGCGACCGACCGGGGCGUCAGGAUCCCUGGCCCCCGGAGAGCGAAGGGCGGGCGGGUCCCGGAGCAAGAAGAAUUGUAUAGAAAUGUAAAAAACAUUUAUGUGUGCUUCACAUGUGGCAUGAAAAAAAUGAGGACCUCUGGUCAAAAUUGCCUGAGUUCAGAAUUUCAUGCUGGAAGGAAAGUUAGACGUAACUUCUAAUUUCUAGUUCCAGUAAGCAUCUCUUCUUGGAAAAUUUCCAAAAAAGAGUCCUGCUCUGUUGCCCAGGCUGGAGUACAUUGGUGUGAUGAUCAUGGUUCACUGCAGCCUCGACCUCCCAGGCUCAAGCAAUUCUCCUACCUCAGCCUCCUGAGUAACUGGGACUAUAGGAUUUCUUUGAAGAAAAAUGUGCUUCUUGAAUCAACUGCAGUCUCUCCUCUGCAUAAGAGCUCUUAAGGGUACUAGCAGGAUAGAAGCAAAUGAAACUGAAAGCUCAUCUGCAGCUCAGAAAAGCAAAGACAUGGAAUUUUAAAGAGUGAAGGUAGCAUGGUGUCGGCCAUGGGUGAACAAGACACAGCCAGACAAUGUGGACCAAUUUCUUCAAACUACGGCUUUUCUGCUGUCUGCUUGCAGUGUUGAUGGUGGUGGUGCUGGUCAUCAAUGUUACUCAGGUAGAGUGGUGUCAAUAUCAAAAUGCCAGUCAACUCCAGUGGACCUGAUUGGGUAACUGUGAUUCCCAGGAGAAUAAAAGAAACUAЖCAGUCUAGAACUAUCUCAAGGCUCAGGAACUUUUCCUUCUGGGUAUUAUUAUAAAGACCAGUGGAGGCCCAGAAAGUUUAAGAUGCGUCAGUUUAAUGACCCUGACAACAUUACAGAGUGCUUACAAAGAAAAGUGGUGCAUUUAUUUGGUGACUCAACAAUCAGGCAAUGGUUUGAAUACCUUACUACAUUUGUUCCAGCACCUUCCCUUUGGAAGUGUACAPCCGGCGGCUCAGGAACAUCCGUCGAGCAGUGGUUCGGCUCCUCGAUCGAAGCCCAAAGЖCCGUGGUGGUCAUCCGGACGGCCAACGCCCAAGAGCUGGGЖCCUGAGGUGAGCCUUUUCAACAGCGACUGGUACAACUUUCAGCUGGЖCACCAPCCUUCGGAGGAUGUUCUCAGGGGUUGGAGUAUAUCUCGUCGAUGCCUGGGAGAUGACCCUGGCCCAUUAUCUACCGCACAAGCUGCAUCCAGAUGAAGUUAUUGUGAAGAACCAGCUGGЖCAUGUUCUUGUCCUUUGUGUGCCCCUUGGAAACCUAGCCUGUCUUGGAAGGGЖCUGGAGGAAUCAUAUUCAAUGЖCCUUCUCAAUUGACCUGAGUUACAGAAAGUGGCCCCAGUGAGAGAUGЖCUGCCCUUAAUAAGUAUAAAAUUUCAAAAAGAUCUGGЖCUUAAUAUGAUGACUUAUAAGGAGCUUAGAAAAUGCAGGUUACAUUUAUAUCUACCUAUAGGAUUUUAUCCAAUGUUGACUUAGCCAUGGUAGAЖCUCUUAЖCUGCAUCUACACACUAUAUUGCUCUUGUAACCAAAGAUGCUAAUGAGUGUAUUUGAAUUAGCUUCUCCUAGGAGGGGUGACUACUUUGCUAAAGAGUAUGAAAAAUGUUUUGAUGGAAGGGACAAGUUUGGUUGGUAGUAGAGUGUUUGUAGCUUAUCUGGUAAAGGAAAUUGAGUGCAUCUGCAUGCAUAGCACAAGUAAUCCAUCUUCUGGCGGUUAACUAGAGAAAGCUUAUAGUCAGAGGCUCUUGUGAAUGCACUGAAGACUGCUGUGUCUCAGGAGUUUCUCUUGAUGAUCUACCUUUUCUGAAUUACUUGAAAAGGCCAAUGUGCUUGGUUCGAGUUUUUUAGUGAAUAUUUACAAUUUCCUGCUUUUAUCUAGAAAAGAAGCAAAAGGGAAAUAUGAAAGCAGUAUAUAUAAAAUCUGUGCUUUGGAAUUGAUAUUUGCAUUUGGUGAUUGUUUUUUAUUUGAUUCAGCUAAAUUUUAUGUGUUGAAUACUUACUCUAGAAUAЖCUACUUUUGGAACUGGA
Sequence (SHORT NAMES ENCODING)	GUCGCCGGGUGAGGAAGCGGGGGGCUAGCGGCCUGGCGCUGCGGCGACCGACCGGGGCGUCAGGAUCCCUGGCCCCCGGAGAGCGAAGGGCGGGCGGGUCCCGGAGCAAGAAGAAUUGUAUAGAAAUGUAAAAAACAUUUAUGUGUGCUUCACAUGUGGCAUGAAAAAAAUGAGGACCUCUGGUCAAAAUUGCCUGAGUUCAGAAUUUCAUGCUGGAAGGAAAGUUAGACGUAACUUCUAAUUUCUAGUUCCAGUAAGCAUCUCUUCUUGGAAAAUUUCCAAAAAAGAGUCCUGCUCUGUUGCCCAGGCUGGAGUACAUUGGUGUGAUGAUCAUGGUUCACUGCAGCCUCGACCUCCCAGGCUCAAGCAAUUCUCCUACCUCAGCCUCCUGAGUAACUGGGACUAUAGGAUUUCUUUGAAGAAAAAUGUGCUUCUUGAAUCAACUGCAGUCUCUCCUCUGCAUAAGAGCUCUUAAGGGUACUAGCAGGAUAGAAGCAAAUGAAACUGAAAGCUCAUCUGCAGCUCAGAAAAGCAAAGACAUGGAAUUUUAAAGAGUGAAGGUAGCAUGGUGUCGGCCAUGGGUGAACAAGACACAGCCAGACAAUGUGGACCAAUUUCUUCAAACUACGGCUUUUCUGCUGUCUGCUUGCAGUGUUGAUGGUGGUGGUGCUGGUCAUCAAUGUUACUCAGGUAGAGUGGUGUCAAUAUCAAAAUGCCAGUCAACUCCAGUGGACCUGAUUGGGUAACUGUGAUUCCCAGGAGAAUAAAAGAAACUAm6ACAGUCUAGAACUAUCUCAAGGCUCAGGAACUUUUCCUUCUGGGUAUUAUUAUAAAGACCAGUGGAGGCCCAGAAAGUUUAAGAUGCGUCAGUUUAAUGACCCUGACAACAUUACAGAGUGCUUACAAAGAAAAGUGGUGCAUUUAUUUGGUGACUCAACAAUCAGGCAAUGGUUUGAAUACCUUACUACAUUUGUUCCAGCACCUUCCCUUUGGAAGUGUACAYCCGGCGGCUCAGGAACAUCCGUCGAGCAGUGGUUCGGCUCCUCGAUCGAAGCCCAAAGm6ACCGUGGUGGUCAUCCGGACGGCCAACGCCCAAGAGCUGGGm6ACCUGAGGUGAGCCUUUUCAACAGCGACUGGUACAACUUUCAGCUGGm6ACACCAYCCUUCGGAGGAUGUUCUCAGGGGUUGGAGUAUAUCUCGUCGAUGCCUGGGAGAUGACCCUGGCCCAUUAUCUACCGCACAAGCUGCAUCCAGAUGAAGUUAUUGUGAAGAACCAGCUGGm6ACAUGUUCUUGUCCUUUGUGUGCCCCUUGGAAACCUAGCCUGUCUUGGAAGGGm6ACUGGAGGAAUCAUAUUCAAUGm6ACCUUCUCAAUUGACCUGAGUUACAGAAAGUGGCCCCAGUGAGAGAUGm6ACUGCCCUUAAUAAGUAUAAAAUUUCAAAAAGAUCUGGm6ACUUAAUAUGAUGACUUAUAAGGAGCUUAGAAAAUGCAGGUUACAUUUAUAUCUACCUAUAGGAUUUUAUCCAAUGUUGACUUAGCCAUGGUAGAm6ACUCUUAm6ACUGCAUCUACACACUAUAUUGCUCUUGUAACCAAAGAUGCUAAUGAGUGUAUUUGAAUUAGCUUCUCCUAGGAGGGGUGACUACUUUGCUAAAGAGUAUGAAAAAUGUUUUGAUGGAAGGGACAAGUUUGGUUGGUAGUAGAGUGUUUGUAGCUUAUCUGGUAAAGGAAAUUGAGUGCAUCUGCAUGCAUAGCACAAGUAAUCCAUCUUCUGGCGGUUAACUAGAGAAAGCUUAUAGUCAGAGGCUCUUGUGAAUGCACUGAAGACUGCUGUGUCUCAGGAGUUUCUCUUGAUGAUCUACCUUUUCUGAAUUACUUGAAAAGGCCAAUGUGCUUGGUUCGAGUUUUUUAGUGAAUAUUUACAAUUUCCUGCUUUUAUCUAGAAAAGAAGCAAAAGGGAAAUAUGAAAGCAGUAUAUAUAAAAUCUGUGCUUUGGAAUUGAUAUUUGCAUUUGGUGAUUGUUUUUUAUUUGAUUCAGCUAAAUUUUAUGUGUUGAAUACUUACUCUAGAAUAm6ACUACUUUUGGAACUGGA
Sequence (MODOMICS CODE ENCODING)	GUCGCCGGGUGAGGAAGCGGGGGGCUAGCGGCCUGGCGCUGCGGCGACCGACCGGGGCGUCAGGAUCCCUGGCCCCCGGAGAGCGAAGGGCGGGCGGGUCCCGGAGCAAGAAGAAUUGUAUAGAAAUGUAAAAAACAUUUAUGUGUGCUUCACAUGUGGCAUGAAAAAAAUGAGGACCUCUGGUCAAAAUUGCCUGAGUUCAGAAUUUCAUGCUGGAAGGAAAGUUAGACGUAACUUCUAAUUUCUAGUUCCAGUAAGCAUCUCUUCUUGGAAAAUUUCCAAAAAAGAGUCCUGCUCUGUUGCCCAGGCUGGAGUACAUUGGUGUGAUGAUCAUGGUUCACUGCAGCCUCGACCUCCCAGGCUCAAGCAAUUCUCCUACCUCAGCCUCCUGAGUAACUGGGACUAUAGGAUUUCUUUGAAGAAAAAUGUGCUUCUUGAAUCAACUGCAGUCUCUCCUCUGCAUAAGAGCUCUUAAGGGUACUAGCAGGAUAGAAGCAAAUGAAACUGAAAGCUCAUCUGCAGCUCAGAAAAGCAAAGACAUGGAAUUUUAAAGAGUGAAGGUAGCAUGGUGUCGGCCAUGGGUGAACAAGACACAGCCAGACAAUGUGGACCAAUUUCUUCAAACUACGGCUUUUCUGCUGUCUGCUUGCAGUGUUGAUGGUGGUGGUGCUGGUCAUCAAUGUUACUCAGGUAGAGUGGUGUCAAUAUCAAAAUGCCAGUCAACUCCAGUGGACCUGAUUGGGUAACUGUGAUUCCCAGGAGAAUAAAAGAAACUA2000000006ACAGUCUAGAACUAUCUCAAGGCUCAGGAACUUUUCCUUCUGGGUAUUAUUAUAAAGACCAGUGGAGGCCCAGAAAGUUUAAGAUGCGUCAGUUUAAUGACCCUGACAACAUUACAGAGUGCUUACAAAGAAAAGUGGUGCAUUUAUUUGGUGACUCAACAAUCAGGCAAUGGUUUGAAUACCUUACUACAUUUGUUCCAGCACCUUCCCUUUGGAAGUGUACA2000000009UCCGGCGGCUCAGGAACAUCCGUCGAGCAGUGGUUCGGCUCCUCGAUCGAAGCCCAAAG2000000006ACCGUGGUGGUCAUCCGGACGGCCAACGCCCAAGAGCUGGG2000000006ACCUGAGGUGAGCCUUUUCAACAGCGACUGGUACAACUUUCAGCUGG2000000006ACACCA2000000009UCCUUCGGAGGAUGUUCUCAGGGGUUGGAGUAUAUCUCGUCGAUGCCUGGGAGAUGACCCUGGCCCAUUAUCUACCGCACAAGCUGCAUCCAGAUGAAGUUAUUGUGAAGAACCAGCUGG2000000006ACAUGUUCUUGUCCUUUGUGUGCCCCUUGGAAACCUAGCCUGUCUUGGAAGGG2000000006ACUGGAGGAAUCAUAUUCAAUG2000000006ACCUUCUCAAUUGACCUGAGUUACAGAAAGUGGCCCCAGUGAGAGAUG2000000006ACUGCCCUUAAUAAGUAUAAAAUUUCAAAAAGAUCUGG2000000006ACUUAAUAUGAUGACUUAUAAGGAGCUUAGAAAAUGCAGGUUACAUUUAUAUCUACCUAUAGGAUUUUAUCCAAUGUUGACUUAGCCAUGGUAGA2000000006ACUCUUA2000000006ACUGCAUCUACACACUAUAUUGCUCUUGUAACCAAAGAUGCUAAUGAGUGUAUUUGAAUUAGCUUCUCCUAGGAGGGGUGACUACUUUGCUAAAGAGUAUGAAAAAUGUUUUGAUGGAAGGGACAAGUUUGGUUGGUAGUAGAGUGUUUGUAGCUUAUCUGGUAAAGGAAAUUGAGUGCAUCUGCAUGCAUAGCACAAGUAAUCCAUCUUCUGGCGGUUAACUAGAGAAAGCUUAUAGUCAGAGGCUCUUGUGAAUGCACUGAAGACUGCUGUGUCUCAGGAGUUUCUCUUGAUGAUCUACCUUUUCUGAAUUACUUGAAAAGGCCAAUGUGCUUGGUUCGAGUUUUUUAGUGAAUAUUUACAAUUUCCUGCUUUUAUCUAGAAAAGAAGCAAAAGGGAAAUAUGAAAGCAGUAUAUAUAAAAUCUGUGCUUUGGAAUUGAUAUUUGCAUUUGGUGAUUGUUUUUUAUUUGAUUCAGCUAAAUUUUAUGUGUUGAAUACUUACUCUAGAAUA2000000006ACUACUUUUGGAACUGGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	777	1001	1060	1101	1148	1154	1274	1327	1349	1397	1435	1530	1537	2049
Modification Positions	m6A	Y	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	3:101816801:+	3:101821644:+	3:101821703:+	3:101821744:+	3:101821791:+	3:101821797:+	3:101821917:+	3:101821970:+	3:101821992:+	3:101822040:+	3:101822078:+	3:101822173:+	3:101822180:+	3:101822692:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3	BtsJQJ3DteUq bXBqJigD9oV3	6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U bXBqJigD9oV3	6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3	4HMi5ykupT9V 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G bXBqJigD9oV3	BtsJQJ3DteUq bXBqJigD9oV3	4HMi5ykupT9V 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3	6AyXsheySjfx gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3	5FhTyQVy2tKW aJksAshEgQ8U D6ncpa2PPWj3 BkoLW2CBToyL KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3	Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3	BtsJQJ3DteUq bXBqJigD9oV3	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda