General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000394180
Gene ID:	ENSG00000080822
Gene Name:	CLDND1
Sequence (UNICHARACTER ENCODING)	UAUCGCCGCCUCAGACAGCUUUCAGUCUGUCCCUCCUACAACUCCCACAAGGCCCCUCGGCCCCGGGCCGCGGCCCGGCCCGGAGUGGGGGCGGGCGGAGGCGCGGGAGUUAUGGAGGGGGCGGGCUCUGCAGGGAAGUGCGUCAGAGGAGGCGCGGGGAGAGUAGGGUGCUGUGGUCUGAGCUAGAGGGUGAAGCUGGCGGAGCAGGAGGAUGGGCGUAUGCAGGUGAUAGACUAGAGAACAAGACCUCUGUCUCCGUAGCAUCCUGGAGCAGUCUGAAUGCCAGAAUGGAUAACCGUUUUGCUACAGCAUUUGUAAUUGCUUGUGUGCUUAGCCUCAUUUCCACCAUCUACAUGGCAGCCUCCAUUGGCACAGACUUCUGGUAUGAAUAUCGAAGUCCAGUUCAAGAAAAUUCCAGUGAUUUGAAUAAAAGCAUCUGGGAUGAAUUCAUUAGUGAUGAGGCAGAUGAAAAGЖCUUAUAAUGAUGCACUUUUUCGAUACAAUGGCACAGUGGGAUUGUGGAGACGGUGUAUCACCAUACCCAAAAACAUGCAUUGGUAUAGCCCACCAGAAAGGACAGAGUCAUUUGAUGUGGUCACAAAAUGUGUGAGUUUCACACUAACUGAGCAGUUCAUGGAGAAAUUUGUUGAUCCCGGAAACCACAAUAGCGGGAUUGAUCUCCUUAGGACCUAUCUUUGGCGUUGCCAGUUCCUUUUACCUUUUGUGAGUUUAGGUUUGAUGUGCUUUGGGGCUUUGAUCGGACUUUGUGCUUGCAUUUGCCGAAGCUUAUAUCCCACCAUUGCCACGGGCAUUCUCCAUCUCCUUGCAGGUCUGUGUACACUGGGCUCAGUAAGUUGUUAUGUUGCUGGAAUUGAACUACUCCACCAGAAACUAGAGCUCCCUGACAAUGUAUCCGGUGAAUUUGGAUGGUCCUUCUGCCUGGCUUGUGUCUCUGCUCCCUUACЖGUUCAUGGCUUCUGCUCUCUUCAUCUGGGCUGCUCACACCAACCGGAAAGAGUACACCUUAAUGAAGGCAUAUCGUGUGGCAUGAGCAAGAAACUGCCUGCUPUACAAUUGCCAUUUUUAUUUUUUUAAAAUAAUACUGAUAUUUUCCCCACCUCUCAAUUGUUUUUAAUUUUUAUUUGUGGAUAUACCAUUUUAUUAUGAAAAUCUAUUUUAUUUAUACACAUUCACCACUAAAUACACACUUAAUACCACUAAAAUUUAUGUGGUUUACUPUAAGCGAUGCCAUCUUUCAAAUAAACUAAUCUAGGUCUAGACAGAAAGAAAUGGAUAGAGACUUGACACAAAUUUAUGAAAGAAAAUUGGGAGUAGGAAUGUGACCGAAAACAAGUUGUGCUAAUGUCUGUUAGACUUUUCAGUAAAACUAAAGUAACUGUAUCUGUUCAACUAAAAACUCUAUAUUAGUUUCUUUGGGAAACCUCUCAUCGUCAAAACUPUAUGUUCACUUUGCUGUUGUAGAUAGCCAGUCAACCAGCAGUAUUAGUGCUGUUUUCAAAGAUUUAAGCUCUAUAAAAUUGGGAAAUUAUCUAAGAUCAUUUUCCCUAAGCAUUGACACAUAGCUUCAUCUGAGGUGAGAUAUGGCAGCUGUUUGUAUCUGCACUGUGUCUGUCUACAAAAAGUGAAAAAUACAGUGUUUACUUGAAAUUUUAЖCUUUGUAACUGCAAGAAUUCCAGUUCAGCCGGGCGAGGAUUAGUAUUAUUUUUAЖCUCUCCGUAAGAUUUUCAGUACCACCAAAUUGUUUUGGAUUUUUUUUCUUUCCUCUUCACAUACCAGGGUUAUUAAAAGUGUGCUUUCUUUUUACAUUAUAUUACAGUUACAAGGUAAAAUUCCUCAACUGCUAUUUAUUUAUUCCAGCCCAGUACUAUAAAGAACGUUUCACCAUAAUGACCCUCCAGAGCUGGGAAACCUACCACAAGAUCUAAAGUUCUGGCUGUCCAUUAACCUCCAACUAUGGUCUPUAUUUCUUGUGGUAAUAUGAUGUGCCUUUCCUUGCCUAAAUCCCUUCCUGGUGUGUAUCAACAUUAUUUAAUGUCUUCUAAUUCAGUCAUUUUUUUAUAAGUAUGUCUAUAAЖCAUUGAACUPUAAAAAACUUAUUUAUUUAUUCCACUACUGUAGCAAUUGACAGAUUAAAAAAAUGUAACUUCAUAAUUUCUUACCAUAACCUCAAUGUCUUUUUUAAAAAAUAAAAUUAAAAAUGAAAAGAGACUC
Sequence (SHORT NAMES ENCODING)	UAUCGCCGCCUCAGACAGCUUUCAGUCUGUCCCUCCUACAACUCCCACAAGGCCCCUCGGCCCCGGGCCGCGGCCCGGCCCGGAGUGGGGGCGGGCGGAGGCGCGGGAGUUAUGGAGGGGGCGGGCUCUGCAGGGAAGUGCGUCAGAGGAGGCGCGGGGAGAGUAGGGUGCUGUGGUCUGAGCUAGAGGGUGAAGCUGGCGGAGCAGGAGGAUGGGCGUAUGCAGGUGAUAGACUAGAGAACAAGACCUCUGUCUCCGUAGCAUCCUGGAGCAGUCUGAAUGCCAGAAUGGAUAACCGUUUUGCUACAGCAUUUGUAAUUGCUUGUGUGCUUAGCCUCAUUUCCACCAUCUACAUGGCAGCCUCCAUUGGCACAGACUUCUGGUAUGAAUAUCGAAGUCCAGUUCAAGAAAAUUCCAGUGAUUUGAAUAAAAGCAUCUGGGAUGAAUUCAUUAGUGAUGAGGCAGAUGAAAAGm6ACUUAUAAUGAUGCACUUUUUCGAUACAAUGGCACAGUGGGAUUGUGGAGACGGUGUAUCACCAUACCCAAAAACAUGCAUUGGUAUAGCCCACCAGAAAGGACAGAGUCAUUUGAUGUGGUCACAAAAUGUGUGAGUUUCACACUAACUGAGCAGUUCAUGGAGAAAUUUGUUGAUCCCGGAAACCACAAUAGCGGGAUUGAUCUCCUUAGGACCUAUCUUUGGCGUUGCCAGUUCCUUUUACCUUUUGUGAGUUUAGGUUUGAUGUGCUUUGGGGCUUUGAUCGGACUUUGUGCUUGCAUUUGCCGAAGCUUAUAUCCCACCAUUGCCACGGGCAUUCUCCAUCUCCUUGCAGGUCUGUGUACACUGGGCUCAGUAAGUUGUUAUGUUGCUGGAAUUGAACUACUCCACCAGAAACUAGAGCUCCCUGACAAUGUAUCCGGUGAAUUUGGAUGGUCCUUCUGCCUGGCUUGUGUCUCUGCUCCCUUACm6AGUUCAUGGCUUCUGCUCUCUUCAUCUGGGCUGCUCACACCAACCGGAAAGAGUACACCUUAAUGAAGGCAUAUCGUGUGGCAUGAGCAAGAAACUGCCUGCUYUACAAUUGCCAUUUUUAUUUUUUUAAAAUAAUACUGAUAUUUUCCCCACCUCUCAAUUGUUUUUAAUUUUUAUUUGUGGAUAUACCAUUUUAUUAUGAAAAUCUAUUUUAUUUAUACACAUUCACCACUAAAUACACACUUAAUACCACUAAAAUUUAUGUGGUUUACUYUAAGCGAUGCCAUCUUUCAAAUAAACUAAUCUAGGUCUAGACAGAAAGAAAUGGAUAGAGACUUGACACAAAUUUAUGAAAGAAAAUUGGGAGUAGGAAUGUGACCGAAAACAAGUUGUGCUAAUGUCUGUUAGACUUUUCAGUAAAACUAAAGUAACUGUAUCUGUUCAACUAAAAACUCUAUAUUAGUUUCUUUGGGAAACCUCUCAUCGUCAAAACUYUAUGUUCACUUUGCUGUUGUAGAUAGCCAGUCAACCAGCAGUAUUAGUGCUGUUUUCAAAGAUUUAAGCUCUAUAAAAUUGGGAAAUUAUCUAAGAUCAUUUUCCCUAAGCAUUGACACAUAGCUUCAUCUGAGGUGAGAUAUGGCAGCUGUUUGUAUCUGCACUGUGUCUGUCUACAAAAAGUGAAAAAUACAGUGUUUACUUGAAAUUUUAm6ACUUUGUAACUGCAAGAAUUCCAGUUCAGCCGGGCGAGGAUUAGUAUUAUUUUUAm6ACUCUCCGUAAGAUUUUCAGUACCACCAAAUUGUUUUGGAUUUUUUUUCUUUCCUCUUCACAUACCAGGGUUAUUAAAAGUGUGCUUUCUUUUUACAUUAUAUUACAGUUACAAGGUAAAAUUCCUCAACUGCUAUUUAUUUAUUCCAGCCCAGUACUAUAAAGAACGUUUCACCAUAAUGACCCUCCAGAGCUGGGAAACCUACCACAAGAUCUAAAGUUCUGGCUGUCCAUUAACCUCCAACUAUGGUCUYUAUUUCUUGUGGUAAUAUGAUGUGCCUUUCCUUGCCUAAAUCCCUUCCUGGUGUGUAUCAACAUUAUUUAAUGUCUUCUAAUUCAGUCAUUUUUUUAUAAGUAUGUCUAUAAm6ACAUUGAACUYUAAAAAACUUAUUUAUUUAUUCCACUACUGUAGCAAUUGACAGAUUAAAAAAAUGUAACUUCAUAAUUUCUUACCAUAACCUCAAUGUCUUUUUUAAAAAAUAAAAUUAAAAAUGAAAAGAGACUC
Sequence (MODOMICS CODE ENCODING)	UAUCGCCGCCUCAGACAGCUUUCAGUCUGUCCCUCCUACAACUCCCACAAGGCCCCUCGGCCCCGGGCCGCGGCCCGGCCCGGAGUGGGGGCGGGCGGAGGCGCGGGAGUUAUGGAGGGGGCGGGCUCUGCAGGGAAGUGCGUCAGAGGAGGCGCGGGGAGAGUAGGGUGCUGUGGUCUGAGCUAGAGGGUGAAGCUGGCGGAGCAGGAGGAUGGGCGUAUGCAGGUGAUAGACUAGAGAACAAGACCUCUGUCUCCGUAGCAUCCUGGAGCAGUCUGAAUGCCAGAAUGGAUAACCGUUUUGCUACAGCAUUUGUAAUUGCUUGUGUGCUUAGCCUCAUUUCCACCAUCUACAUGGCAGCCUCCAUUGGCACAGACUUCUGGUAUGAAUAUCGAAGUCCAGUUCAAGAAAAUUCCAGUGAUUUGAAUAAAAGCAUCUGGGAUGAAUUCAUUAGUGAUGAGGCAGAUGAAAAG2000000006ACUUAUAAUGAUGCACUUUUUCGAUACAAUGGCACAGUGGGAUUGUGGAGACGGUGUAUCACCAUACCCAAAAACAUGCAUUGGUAUAGCCCACCAGAAAGGACAGAGUCAUUUGAUGUGGUCACAAAAUGUGUGAGUUUCACACUAACUGAGCAGUUCAUGGAGAAAUUUGUUGAUCCCGGAAACCACAAUAGCGGGAUUGAUCUCCUUAGGACCUAUCUUUGGCGUUGCCAGUUCCUUUUACCUUUUGUGAGUUUAGGUUUGAUGUGCUUUGGGGCUUUGAUCGGACUUUGUGCUUGCAUUUGCCGAAGCUUAUAUCCCACCAUUGCCACGGGCAUUCUCCAUCUCCUUGCAGGUCUGUGUACACUGGGCUCAGUAAGUUGUUAUGUUGCUGGAAUUGAACUACUCCACCAGAAACUAGAGCUCCCUGACAAUGUAUCCGGUGAAUUUGGAUGGUCCUUCUGCCUGGCUUGUGUCUCUGCUCCCUUAC2000000006AGUUCAUGGCUUCUGCUCUCUUCAUCUGGGCUGCUCACACCAACCGGAAAGAGUACACCUUAAUGAAGGCAUAUCGUGUGGCAUGAGCAAGAAACUGCCUGCU2000000009UUACAAUUGCCAUUUUUAUUUUUUUAAAAUAAUACUGAUAUUUUCCCCACCUCUCAAUUGUUUUUAAUUUUUAUUUGUGGAUAUACCAUUUUAUUAUGAAAAUCUAUUUUAUUUAUACACAUUCACCACUAAAUACACACUUAAUACCACUAAAAUUUAUGUGGUUUACU2000000009UUAAGCGAUGCCAUCUUUCAAAUAAACUAAUCUAGGUCUAGACAGAAAGAAAUGGAUAGAGACUUGACACAAAUUUAUGAAAGAAAAUUGGGAGUAGGAAUGUGACCGAAAACAAGUUGUGCUAAUGUCUGUUAGACUUUUCAGUAAAACUAAAGUAACUGUAUCUGUUCAACUAAAAACUCUAUAUUAGUUUCUUUGGGAAACCUCUCAUCGUCAAAACU2000000009UUAUGUUCACUUUGCUGUUGUAGAUAGCCAGUCAACCAGCAGUAUUAGUGCUGUUUUCAAAGAUUUAAGCUCUAUAAAAUUGGGAAAUUAUCUAAGAUCAUUUUCCCUAAGCAUUGACACAUAGCUUCAUCUGAGGUGAGAUAUGGCAGCUGUUUGUAUCUGCACUGUGUCUGUCUACAAAAAGUGAAAAAUACAGUGUUUACUUGAAAUUUUA2000000006ACUUUGUAACUGCAAGAAUUCCAGUUCAGCCGGGCGAGGAUUAGUAUUAUUUUUA2000000006ACUCUCCGUAAGAUUUUCAGUACCACCAAAUUGUUUUGGAUUUUUUUUCUUUCCUCUUCACAUACCAGGGUUAUUAAAAGUGUGCUUUCUUUUUACAUUAUAUUACAGUUACAAGGUAAAAUUCCUCAACUGCUAUUUAUUUAUUCCAGCCCAGUACUAUAAAGAACGUUUCACCAUAAUGACCCUCCAGAGCUGGGAAACCUACCACAAGAUCUAAAGUUCUGGCUGUCCAUUAACCUCCAACUAUGGUCU2000000009UUAUUUCUUGUGGUAAUAUGAUGUGCCUUUCCUUGCCUAAAUCCCUUCCUGGUGUGUAUCAACAUUAUUUAAUGUCUUCUAAUUCAGUCAUUUUUUUAUAAGUAUGUCUAUAA2000000006ACAUUGAACU2000000009UUAAAAAACUUAUUUAUUUAUUCCACUACUGUAGCAAUUGACAGAUUAAAAAAAUGUAACUUCAUAAUUUCUUACCAUAACCUCAAUGUCUUUUUUAAAAAAUAAAAUUAAAAAUGAAAAGAGACUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	474	964	1067	1237	1458	1672	1727	1979	2092	2102
Modification Positions	m6A	m6A	Y	Y	Y	m6A	m6A	Y	m6A	Y
Genomic Coordinates	3:98521238:-	3:98516744:-	3:98516641:-	3:98516471:-	3:98516250:-	3:98516036:-	3:98515981:-	3:98515729:-	3:98515616:-	3:98515606:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VyCX26p5UBRL aJksAshEgQ8U D6ncpa2PPWj3 BkoLW2CBToyL KTLz8piFYdwC BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8