Modomics - A Database of RNA Modifications

General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000441497
Gene ID:	ENSG00000114346
Gene Name:	ECT2
Sequence (UNICHARACTER ENCODING)	UUUUGCCCAAUGACCAUGUUUAUGUAUUUUUAUUCAAAUUUUAUUUUUUCAGCUGAUUUAGAAGAAUACЖAAUCAUGGCUGAAAAUAGUGUAUUAACAPCCACUACUGGGAGGACUAGCUUGGCAGACUCUUCCAUUUUUGAUUCUAAAGUUACUGAGAUUUCCAAGGAAAACUUACUUAUUGGAUCUACUUCAUAUGUAGAAGAAGAGAUGCCUCAGAUUGAAACAAGAGUGAUAUUGGUUCAAGAAGCUGGAAAACAAGAAGAACUUAUAAAAGCCUUAAAGGACAUUAAAGUGGGCUUUGUAAAGAUGGAGUCAGUGGAAGAAUUUGAAGGUUUGGAUUCUCCGGAAUUUGAAAAUGUAUUUGUAGUCACGGACUUUCAGGAUUCUGUCUPUAAUGACCUCUACAAGGCUGAUUGUAGAGUUAUUGGACCACCAGUUGUAUUAAAUUGUUCACAAAAAGGAGAGCCUUUGCCAUUUUCAUGUCGCCCGUUGUAUUGUACAAGUAUGAUGAAUCUAGUACUAUGCUPUACUGGAUUUAGGAAAAAAGAAGAACUAGUCAGGUUGGUGACAUUGGUCCAUCACAUGGGUGGAGUUAUUCGAAAAGACUPUAAUUCAAAAGUUACACAUUUGGUGGCAAAUUGUACACAAGGAGAAAAAUUCAGGGUUGCUGUGAGUCUAGGUACUCCAAUUAUGAAGCCAGAAUGGAUUUAUAAAGCUUGGGAAAGGCGGAAUGAACAGGAUUUCUAUGCAGCAGUUGAUGACUPUAGAAAUGAAUUUAAAGUUCCUCCAUUUCAAGAUUGUAUUUUAAGUUUCCUGGGAUUUUCAGAUGAAGAGAAAACCAAUAUGGAAGAAAUGACUGAAAUGCAAGGAGGUAAAUAUUUACCGCUUGGAGAUGAAAGAUGCACUCACCUUGUAGUUGAAGAGAAUAUAGUAAAAGAUCUUCCCUUUGAACCUUCAAAGAAACUPUAUGUUGUCAAGCAAGAGUGGUUCUGGGGAAGCAUUCAAAUGGAUGCCCGAGCUGGAGAAACUAUGUAUUUAUAUGAAAAGGCAAAUACUCCUGAGCUCAAGAAAUCAGUGUCAAUGCUUUCUCUAAAUACCCCUAACAGCAAUCGCAAACGACGUCGUUUAAAAGAAACACUUGCUCAGCUUUCAAGAGAGACAGACGUGUCACCAUUUCCACCCCGUAAGCGCCCAUCAGCUGAGCAUUCCCUUUCCAUAGGGUCACUCCUAGAUAUCUCCAACACACCAGAGUCUAGCAUUAACUAUGGAGACACCCCAAAGUCUUGUACUAAGUCUUCUAAAAGCUCCACUCCAGUUCCUUCAAAGCAGUCAGCAAGGUGGCAAGUUGCAAAAGAGCUPUAUCAAЖCUGAAAGUAAUUAUGUUAAUAUAUUGGCAACAAUUAUUCAGUUAUUUCAAGUACCAUUGGAAGAGGAAGGACAACGUGGUGGACCUAUCCUUGCACCAGAGGAGAUUAAGACUAUUUUUGGUAGCAUCCCAGAUAUCUUUGAUGUACЖCACUAAGAUAAAGGAUGAUCUUGAAGACCUUAUAGUUAAUUGGGAUGAGAGCAAAAGCAUUGGUGACAUUUUUCUGAAAUAUUCAAAAGAUUUGGUAAAAACCUACCCUCCCUUUGUAAACUUCUUUGAAAUGAGCAAGGAAACAAUUAUUAAAUGUGAAAAACAGAAACCAAGAUUUCAUGCUUUUCUCAAGAUAAACCAAGCAAAACCAGAAUGUGGACGGCAGAGCCUUGUUGAACUUCUUAUCCGACCAGUACЖGAGGUUACCCAGUGUUGCAUUACUUUUAAAUGAUCUUAAGAAGCAUACAGCUGAUGAAAAUCCAGACAAAAGCACUPUAGAAAAAGCUAUUGGAUCACUGAAGGAAGUAAUGACGCAUAUUAAUGAGGAUAAGAGAAAAACAGAAGCUCAAAAGCAAAUUUUUGAUGUUGUUUAUGAAGUAGAUGGAUGCCCAGCUAAUCUUUUAUCUUCUCACCGAAGCUUAGUACAGCGGGUUGAAACAAUUUCUCUAGGUGAGCACCCCUGUGACAGAGGAGAACAAGUAACUCUCUUCCUCUUCAAUGAUUGCCUAGAGAUAGCAAGAAAACGGCACAAGGUUAUUGGCACUUUUAGGAGUCCUCAUGGCCAAЖCCCGACCCCCAGCUUCUCUUAAGCAUAUUCACCUAAUGCCUCUUUCUCAGAUUAAGAAGGUAUUGGACAPAAGAGAGACAGAAGAUUGCCAUAAUGCUUUUGCCUUGCUUGUGAGGCCACCAACAGAGCAGGCAAAUGUGCUACUCAGUUUCCAGAUGACAUCAGAUGAACUUCCAAAAGAAAACUGGCUAAAGAUGCUGUGUCGACAUGUAGCUAЖCACCAUUUGUAAAGCAGAUGCUGAGAAUCUUAUUUAUACUGCUGAUCCAGAAUCCUUUGAAGUAAAUACAAAAGAUAUGGACAGUACAUUGAGUAGAGCAUCAAGAGCAAUAAAAAAGACUUCAAAAAAGGUUACAAGAGCAUUCUCUUUCUCCAAAACUCCAAAAAGAGCUCUUCGAAGGGCUCUUAUGACAUCCCACGGCUCAGUGGAGGGAAGAAGUCCUUCCAGCAAUGAUAAGCAUGUAAUGAGUCGUCUUUCUAGCACAUCAUCAUUAGCAGGUAUCCCUUCUCCCUCCCUUGUCAGCCUUCCUUCCUUCUUUGAAAGGAGAAGUCAUACGUUAAGUAGAUCUACAACUCAUUUGAUAUGAAGCGUUACCAAAAUCUUAAAUUAUAGAAAUGUAUAGACACCUCAUACUCAAAUAAGAAACUGACUUAAAUGGUACUUGUAAUUAGCACUUGGUGAAAGC
Sequence (SHORT NAMES ENCODING)	UUUUGCCCAAUGACCAUGUUUAUGUAUUUUUAUUCAAAUUUUAUUUUUUCAGCUGAUUUAGAAGAAUACm6AAAUCAUGGCUGAAAAUAGUGUAUUAACAYCCACUACUGGGAGGACUAGCUUGGCAGACUCUUCCAUUUUUGAUUCUAAAGUUACUGAGAUUUCCAAGGAAAACUUACUUAUUGGAUCUACUUCAUAUGUAGAAGAAGAGAUGCCUCAGAUUGAAACAAGAGUGAUAUUGGUUCAAGAAGCUGGAAAACAAGAAGAACUUAUAAAAGCCUUAAAGGACAUUAAAGUGGGCUUUGUAAAGAUGGAGUCAGUGGAAGAAUUUGAAGGUUUGGAUUCUCCGGAAUUUGAAAAUGUAUUUGUAGUCACGGACUUUCAGGAUUCUGUCUYUAAUGACCUCUACAAGGCUGAUUGUAGAGUUAUUGGACCACCAGUUGUAUUAAAUUGUUCACAAAAAGGAGAGCCUUUGCCAUUUUCAUGUCGCCCGUUGUAUUGUACAAGUAUGAUGAAUCUAGUACUAUGCUYUACUGGAUUUAGGAAAAAAGAAGAACUAGUCAGGUUGGUGACAUUGGUCCAUCACAUGGGUGGAGUUAUUCGAAAAGACUYUAAUUCAAAAGUUACACAUUUGGUGGCAAAUUGUACACAAGGAGAAAAAUUCAGGGUUGCUGUGAGUCUAGGUACUCCAAUUAUGAAGCCAGAAUGGAUUUAUAAAGCUUGGGAAAGGCGGAAUGAACAGGAUUUCUAUGCAGCAGUUGAUGACUYUAGAAAUGAAUUUAAAGUUCCUCCAUUUCAAGAUUGUAUUUUAAGUUUCCUGGGAUUUUCAGAUGAAGAGAAAACCAAUAUGGAAGAAAUGACUGAAAUGCAAGGAGGUAAAUAUUUACCGCUUGGAGAUGAAAGAUGCACUCACCUUGUAGUUGAAGAGAAUAUAGUAAAAGAUCUUCCCUUUGAACCUUCAAAGAAACUYUAUGUUGUCAAGCAAGAGUGGUUCUGGGGAAGCAUUCAAAUGGAUGCCCGAGCUGGAGAAACUAUGUAUUUAUAUGAAAAGGCAAAUACUCCUGAGCUCAAGAAAUCAGUGUCAAUGCUUUCUCUAAAUACCCCUAACAGCAAUCGCAAACGACGUCGUUUAAAAGAAACACUUGCUCAGCUUUCAAGAGAGACAGACGUGUCACCAUUUCCACCCCGUAAGCGCCCAUCAGCUGAGCAUUCCCUUUCCAUAGGGUCACUCCUAGAUAUCUCCAACACACCAGAGUCUAGCAUUAACUAUGGAGACACCCCAAAGUCUUGUACUAAGUCUUCUAAAAGCUCCACUCCAGUUCCUUCAAAGCAGUCAGCAAGGUGGCAAGUUGCAAAAGAGCUYUAUCAAm6ACUGAAAGUAAUUAUGUUAAUAUAUUGGCAACAAUUAUUCAGUUAUUUCAAGUACCAUUGGAAGAGGAAGGACAACGUGGUGGACCUAUCCUUGCACCAGAGGAGAUUAAGACUAUUUUUGGUAGCAUCCCAGAUAUCUUUGAUGUACm6ACACUAAGAUAAAGGAUGAUCUUGAAGACCUUAUAGUUAAUUGGGAUGAGAGCAAAAGCAUUGGUGACAUUUUUCUGAAAUAUUCAAAAGAUUUGGUAAAAACCUACCCUCCCUUUGUAAACUUCUUUGAAAUGAGCAAGGAAACAAUUAUUAAAUGUGAAAAACAGAAACCAAGAUUUCAUGCUUUUCUCAAGAUAAACCAAGCAAAACCAGAAUGUGGACGGCAGAGCCUUGUUGAACUUCUUAUCCGACCAGUACm6AGAGGUUACCCAGUGUUGCAUUACUUUUAAAUGAUCUUAAGAAGCAUACAGCUGAUGAAAAUCCAGACAAAAGCACUYUAGAAAAAGCUAUUGGAUCACUGAAGGAAGUAAUGACGCAUAUUAAUGAGGAUAAGAGAAAAACAGAAGCUCAAAAGCAAAUUUUUGAUGUUGUUUAUGAAGUAGAUGGAUGCCCAGCUAAUCUUUUAUCUUCUCACCGAAGCUUAGUACAGCGGGUUGAAACAAUUUCUCUAGGUGAGCACCCCUGUGACAGAGGAGAACAAGUAACUCUCUUCCUCUUCAAUGAUUGCCUAGAGAUAGCAAGAAAACGGCACAAGGUUAUUGGCACUUUUAGGAGUCCUCAUGGCCAAm6ACCCGACCCCCAGCUUCUCUUAAGCAUAUUCACCUAAUGCCUCUUUCUCAGAUUAAGAAGGUAUUGGACAYAAGAGAGACAGAAGAUUGCCAUAAUGCUUUUGCCUUGCUUGUGAGGCCACCAACAGAGCAGGCAAAUGUGCUACUCAGUUUCCAGAUGACAUCAGAUGAACUUCCAAAAGAAAACUGGCUAAAGAUGCUGUGUCGACAUGUAGCUAm6ACACCAUUUGUAAAGCAGAUGCUGAGAAUCUUAUUUAUACUGCUGAUCCAGAAUCCUUUGAAGUAAAUACAAAAGAUAUGGACAGUACAUUGAGUAGAGCAUCAAGAGCAAUAAAAAAGACUUCAAAAAAGGUUACAAGAGCAUUCUCUUUCUCCAAAACUCCAAAAAGAGCUCUUCGAAGGGCUCUUAUGACAUCCCACGGCUCAGUGGAGGGAAGAAGUCCUUCCAGCAAUGAUAAGCAUGUAAUGAGUCGUCUUUCUAGCACAUCAUCAUUAGCAGGUAUCCCUUCUCCCUCCCUUGUCAGCCUUCCUUCCUUCUUUGAAAGGAGAAGUCAUACGUUAAGUAGAUCUACAACUCAUUUGAUAUGAAGCGUUACCAAAAUCUUAAAUUAUAGAAAUGUAUAGACACCUCAUACUCAAAUAAGAAACUGACUUAAAUGGUACUUGUAAUUAGCACUUGGUGAAAGC
Sequence (MODOMICS CODE ENCODING)	UUUUGCCCAAUGACCAUGUUUAUGUAUUUUUAUUCAAAUUUUAUUUUUUCAGCUGAUUUAGAAGAAUAC2000000006AAAUCAUGGCUGAAAAUAGUGUAUUAACA2000000009UCCACUACUGGGAGGACUAGCUUGGCAGACUCUUCCAUUUUUGAUUCUAAAGUUACUGAGAUUUCCAAGGAAAACUUACUUAUUGGAUCUACUUCAUAUGUAGAAGAAGAGAUGCCUCAGAUUGAAACAAGAGUGAUAUUGGUUCAAGAAGCUGGAAAACAAGAAGAACUUAUAAAAGCCUUAAAGGACAUUAAAGUGGGCUUUGUAAAGAUGGAGUCAGUGGAAGAAUUUGAAGGUUUGGAUUCUCCGGAAUUUGAAAAUGUAUUUGUAGUCACGGACUUUCAGGAUUCUGUCU2000000009UUAAUGACCUCUACAAGGCUGAUUGUAGAGUUAUUGGACCACCAGUUGUAUUAAAUUGUUCACAAAAAGGAGAGCCUUUGCCAUUUUCAUGUCGCCCGUUGUAUUGUACAAGUAUGAUGAAUCUAGUACUAUGCU2000000009UUACUGGAUUUAGGAAAAAAGAAGAACUAGUCAGGUUGGUGACAUUGGUCCAUCACAUGGGUGGAGUUAUUCGAAAAGACU2000000009UUAAUUCAAAAGUUACACAUUUGGUGGCAAAUUGUACACAAGGAGAAAAAUUCAGGGUUGCUGUGAGUCUAGGUACUCCAAUUAUGAAGCCAGAAUGGAUUUAUAAAGCUUGGGAAAGGCGGAAUGAACAGGAUUUCUAUGCAGCAGUUGAUGACU2000000009UUAGAAAUGAAUUUAAAGUUCCUCCAUUUCAAGAUUGUAUUUUAAGUUUCCUGGGAUUUUCAGAUGAAGAGAAAACCAAUAUGGAAGAAAUGACUGAAAUGCAAGGAGGUAAAUAUUUACCGCUUGGAGAUGAAAGAUGCACUCACCUUGUAGUUGAAGAGAAUAUAGUAAAAGAUCUUCCCUUUGAACCUUCAAAGAAACU2000000009UUAUGUUGUCAAGCAAGAGUGGUUCUGGGGAAGCAUUCAAAUGGAUGCCCGAGCUGGAGAAACUAUGUAUUUAUAUGAAAAGGCAAAUACUCCUGAGCUCAAGAAAUCAGUGUCAAUGCUUUCUCUAAAUACCCCUAACAGCAAUCGCAAACGACGUCGUUUAAAAGAAACACUUGCUCAGCUUUCAAGAGAGACAGACGUGUCACCAUUUCCACCCCGUAAGCGCCCAUCAGCUGAGCAUUCCCUUUCCAUAGGGUCACUCCUAGAUAUCUCCAACACACCAGAGUCUAGCAUUAACUAUGGAGACACCCCAAAGUCUUGUACUAAGUCUUCUAAAAGCUCCACUCCAGUUCCUUCAAAGCAGUCAGCAAGGUGGCAAGUUGCAAAAGAGCU2000000009UUAUCAA2000000006ACUGAAAGUAAUUAUGUUAAUAUAUUGGCAACAAUUAUUCAGUUAUUUCAAGUACCAUUGGAAGAGGAAGGACAACGUGGUGGACCUAUCCUUGCACCAGAGGAGAUUAAGACUAUUUUUGGUAGCAUCCCAGAUAUCUUUGAUGUAC2000000006ACACUAAGAUAAAGGAUGAUCUUGAAGACCUUAUAGUUAAUUGGGAUGAGAGCAAAAGCAUUGGUGACAUUUUUCUGAAAUAUUCAAAAGAUUUGGUAAAAACCUACCCUCCCUUUGUAAACUUCUUUGAAAUGAGCAAGGAAACAAUUAUUAAAUGUGAAAAACAGAAACCAAGAUUUCAUGCUUUUCUCAAGAUAAACCAAGCAAAACCAGAAUGUGGACGGCAGAGCCUUGUUGAACUUCUUAUCCGACCAGUAC2000000006AGAGGUUACCCAGUGUUGCAUUACUUUUAAAUGAUCUUAAGAAGCAUACAGCUGAUGAAAAUCCAGACAAAAGCACU2000000009UUAGAAAAAGCUAUUGGAUCACUGAAGGAAGUAAUGACGCAUAUUAAUGAGGAUAAGAGAAAAACAGAAGCUCAAAAGCAAAUUUUUGAUGUUGUUUAUGAAGUAGAUGGAUGCCCAGCUAAUCUUUUAUCUUCUCACCGAAGCUUAGUACAGCGGGUUGAAACAAUUUCUCUAGGUGAGCACCCCUGUGACAGAGGAGAACAAGUAACUCUCUUCCUCUUCAAUGAUUGCCUAGAGAUAGCAAGAAAACGGCACAAGGUUAUUGGCACUUUUAGGAGUCCUCAUGGCCAA2000000006ACCCGACCCCCAGCUUCUCUUAAGCAUAUUCACCUAAUGCCUCUUUCUCAGAUUAAGAAGGUAUUGGACA2000000009UAAGAGAGACAGAAGAUUGCCAUAAUGCUUUUGCCUUGCUUGUGAGGCCACCAACAGAGCAGGCAAAUGUGCUACUCAGUUUCCAGAUGACAUCAGAUGAACUUCCAAAAGAAAACUGGCUAAAGAUGCUGUGUCGACAUGUAGCUA2000000006ACACCAUUUGUAAAGCAGAUGCUGAGAAUCUUAUUUAUACUGCUGAUCCAGAAUCCUUUGAAGUAAAUACAAAAGAUAUGGACAGUACAUUGAGUAGAGCAUCAAGAGCAAUAAAAAAGACUUCAAAAAAGGUUACAAGAGCAUUCUCUUUCUCCAAAACUCCAAAAAGAGCUCUUCGAAGGGCUCUUAUGACAUCCCACGGCUCAGUGGAGGGAAGAAGUCCUUCCAGCAAUGAUAAGCAUGUAAUGAGUCGUCUUUCUAGCACAUCAUCAUUAGCAGGUAUCCCUUCUCCCUCCCUUGUCAGCCUUCCUUCCUUCUUUGAAAGGAGAAGUCAUACGUUAAGUAGAUCUACAACUCAUUUGAUAUGAAGCGUUACCAAAAUCUUAAAUUAUAGAAAUGUAUAGACACCUCAUACUCAAAUAAGAAACUGACUUAAAUGGUACUUGUAAUUAGCACUUGGUGAAAGC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and
evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered
as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors
should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected.
Class 4 is considered as questionable. Class 5 evidence means that
verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences.
Edit locations not originally present in the RNA sequences are marked by their source.
Their scores are in third row.}

Position in the Sequence	70	99	394	529	610	766	968	1361	1368	1516	1774	1851	2142	2212	2359
Modification Positions	m6A	Y	Y	Y	Y	Y	Y	Y	m6A	m6A	m6A	Y	m6A	Y	m6A
Genomic Coordinates	3:172754526:+	3:172754555:+	3:172757092:+	3:172759041:+	3:172760208:+	3:172762442:+	3:172762788:+	3:172769095:+	3:172769102:+	3:172774009:+	3:172784771:+	3:172786537:+	3:172805785:+	3:172805855:+	3:172807902:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3kRDPWwiRCgi L6w2k2VEv4EY	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 Yfn77uLS5tv8