General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000610970
Gene ID:	ENSG00000197576
Gene Name:	HOXA4
Sequence (UNICHARACTER ENCODING)	AAAACGACAACGCGAGAAAAAUUAGUAUUUUUGCACUUCACAAAUUAAUGACCAUGAGCUCGUUUUUGAUAAACUCCAACUACAUCGAGCCCAAGUUCCCUCCCUUCGAGGAGUACGCGCAGCACAGCGGCUCGGGCGGCGCAGACGGCGGCCCGGGCGGGGGCCCCGGCUACCAGCAGCCCCCAGCGCCCCCGACCCAGCACCUGCCGCUGCAGCAGCCCCAGCUCCCUCACGCGGGCGGCGGCCGAGAGCCCACUGCCUCCUACUACGCGCCGCGGACCGCCCGCGAGCCCGCCUACCCUGCUGCCGCGCUGUACCCCGCGCAUGGGGCCGCGGACACCGCCUACCCCUAUGGCUACCGCGGCGGCGCCAGCCCCGGGCGGCCGCCCCAGCCCGAGCAGCCCCCGGCGCAAGCCAAGGGCCCAGCGCACGGCCUGCAUGCGAGCCACGUCCUGCAGCCCCAGCUGCCGCCGCCCCUGCAGCCUCGCGCCGUGCCCCCAGCGGCCCCGCGGCGCUGCGAGGCGGCCCCCGCCACCCCAGGCGUCCCGGCAGGGGGCAGCGCCCCCGCGUGCCCGCUGCUCUUGGCCGACAAGAGCCCGCUGGGCCUGAAGGGCAAGGAGCCCGUGGUGUACCCCUGGAUGAAGAAGAUCCAUGUCAGCGCCGUUAACCCCAGUUAUAACGGAGGGGAGCCUAAGCGCUCUCGAACCGCCUACACCCGGCAGCAGGUCUUGGAGCUGGAGAAGGAGUUCCACUUCAAUCGAUACCUGACCCGGCGGCGCCGCAUCGAGAUCGCCCACACGCUCUGUUUGUCUGAGCGCCAGGUCAAGAUCUGGUUUCAGAACCGGAGGAUGAAGUGGAAGAAAGACCACAAACUGCCCAACACCAAGAUGCGAUCCUCCAAUUCGGCCUCGGCCUCUGCCGGCCCACCAGGGAAAGCACAAACUCAGAGCCCACACCPCCAPCCCCACCCCCACCCGAGCACCUCCACACCCGUUCCCUCCUCCAUAUAAUCUUCUAGAGAUCUUAACCAGUUUCUAUCCCUUACCUGCUUUUCUCUUCUCUUCUCCUGCUCCGUUCCUCAPCCACCCCUCCCCAUCUGGACCAUAAUAGACACCAAAACAAACCCAAAUUGGUGAAAAGAAUAAUCAAAAAGAAGACAUUAUCCGGUUAAGAGUCUGUGCUGGUUGCCACCCAAGAGAGAЖCAGUUGUCCAGGAUGCUGGCUGGUGGAACAACCUGCUGGCCCGAAACAAGGCUGCCAGGUGUGGAUACCUGAGAAGGЖCUACUUGGUAUCAAAUACUUUUGAGAUGGCUACAGUCAGCUAGCUGGЖCAGCCCAUGCUGAGUGGGGЖCAUACACUUGCAUCUUUGUUGAAAGCAGAAGAAGACAGACCCUUUCCCCACCUUCCUUACCUCCUCUUCCCCCAUUAAGGCAGCUCAPCCAAGCUUGUAUUUAACUGAAUAAAUGAGUAGACAUUGUGGACCUCACAAGAUUAUUUAAUUCUUAAGAUGUGUAGACCUUGAUGGUAGGUGUGACAUGUUAGUUUUUCUUACUUGCAUUUAUUUAAGACACUGUUACAGAGAUACUGUUGUCCCCUUCUGGGGCACGGUCUUUGGGGAGAGGGGAGUGCAUUUAGACUUAUGUGGAACUGUACAAAUUGUGAUGUGGCUACAUAGAAAGCCAUGUGCUAAGAAUAAACUCCAUUUAAAAAACAUUAAAAAUCUAAGAUUCA
Sequence (SHORT NAMES ENCODING)	AAAACGACAACGCGAGAAAAAUUAGUAUUUUUGCACUUCACAAAUUAAUGACCAUGAGCUCGUUUUUGAUAAACUCCAACUACAUCGAGCCCAAGUUCCCUCCCUUCGAGGAGUACGCGCAGCACAGCGGCUCGGGCGGCGCAGACGGCGGCCCGGGCGGGGGCCCCGGCUACCAGCAGCCCCCAGCGCCCCCGACCCAGCACCUGCCGCUGCAGCAGCCCCAGCUCCCUCACGCGGGCGGCGGCCGAGAGCCCACUGCCUCCUACUACGCGCCGCGGACCGCCCGCGAGCCCGCCUACCCUGCUGCCGCGCUGUACCCCGCGCAUGGGGCCGCGGACACCGCCUACCCCUAUGGCUACCGCGGCGGCGCCAGCCCCGGGCGGCCGCCCCAGCCCGAGCAGCCCCCGGCGCAAGCCAAGGGCCCAGCGCACGGCCUGCAUGCGAGCCACGUCCUGCAGCCCCAGCUGCCGCCGCCCCUGCAGCCUCGCGCCGUGCCCCCAGCGGCCCCGCGGCGCUGCGAGGCGGCCCCCGCCACCCCAGGCGUCCCGGCAGGGGGCAGCGCCCCCGCGUGCCCGCUGCUCUUGGCCGACAAGAGCCCGCUGGGCCUGAAGGGCAAGGAGCCCGUGGUGUACCCCUGGAUGAAGAAGAUCCAUGUCAGCGCCGUUAACCCCAGUUAUAACGGAGGGGAGCCUAAGCGCUCUCGAACCGCCUACACCCGGCAGCAGGUCUUGGAGCUGGAGAAGGAGUUCCACUUCAAUCGAUACCUGACCCGGCGGCGCCGCAUCGAGAUCGCCCACACGCUCUGUUUGUCUGAGCGCCAGGUCAAGAUCUGGUUUCAGAACCGGAGGAUGAAGUGGAAGAAAGACCACAAACUGCCCAACACCAAGAUGCGAUCCUCCAAUUCGGCCUCGGCCUCUGCCGGCCCACCAGGGAAAGCACAAACUCAGAGCCCACACCYCCAYCCCCACCCCCACCCGAGCACCUCCACACCCGUUCCCUCCUCCAUAUAAUCUUCUAGAGAUCUUAACCAGUUUCUAUCCCUUACCUGCUUUUCUCUUCUCUUCUCCUGCUCCGUUCCUCAYCCACCCCUCCCCAUCUGGACCAUAAUAGACACCAAAACAAACCCAAAUUGGUGAAAAGAAUAAUCAAAAAGAAGACAUUAUCCGGUUAAGAGUCUGUGCUGGUUGCCACCCAAGAGAGAm6ACAGUUGUCCAGGAUGCUGGCUGGUGGAACAACCUGCUGGCCCGAAACAAGGCUGCCAGGUGUGGAUACCUGAGAAGGm6ACUACUUGGUAUCAAAUACUUUUGAGAUGGCUACAGUCAGCUAGCUGGm6ACAGCCCAUGCUGAGUGGGGm6ACAUACACUUGCAUCUUUGUUGAAAGCAGAAGAAGACAGACCCUUUCCCCACCUUCCUUACCUCCUCUUCCCCCAUUAAGGCAGCUCAYCCAAGCUUGUAUUUAACUGAAUAAAUGAGUAGACAUUGUGGACCUCACAAGAUUAUUUAAUUCUUAAGAUGUGUAGACCUUGAUGGUAGGUGUGACAUGUUAGUUUUUCUUACUUGCAUUUAUUUAAGACACUGUUACAGAGAUACUGUUGUCCCCUUCUGGGGCACGGUCUUUGGGGAGAGGGGAGUGCAUUUAGACUUAUGUGGAACUGUACAAAUUGUGAUGUGGCUACAUAGAAAGCCAUGUGCUAAGAAUAAACUCCAUUUAAAAAACAUUAAAAAUCUAAGAUUCA
Sequence (MODOMICS CODE ENCODING)	AAAACGACAACGCGAGAAAAAUUAGUAUUUUUGCACUUCACAAAUUAAUGACCAUGAGCUCGUUUUUGAUAAACUCCAACUACAUCGAGCCCAAGUUCCCUCCCUUCGAGGAGUACGCGCAGCACAGCGGCUCGGGCGGCGCAGACGGCGGCCCGGGCGGGGGCCCCGGCUACCAGCAGCCCCCAGCGCCCCCGACCCAGCACCUGCCGCUGCAGCAGCCCCAGCUCCCUCACGCGGGCGGCGGCCGAGAGCCCACUGCCUCCUACUACGCGCCGCGGACCGCCCGCGAGCCCGCCUACCCUGCUGCCGCGCUGUACCCCGCGCAUGGGGCCGCGGACACCGCCUACCCCUAUGGCUACCGCGGCGGCGCCAGCCCCGGGCGGCCGCCCCAGCCCGAGCAGCCCCCGGCGCAAGCCAAGGGCCCAGCGCACGGCCUGCAUGCGAGCCACGUCCUGCAGCCCCAGCUGCCGCCGCCCCUGCAGCCUCGCGCCGUGCCCCCAGCGGCCCCGCGGCGCUGCGAGGCGGCCCCCGCCACCCCAGGCGUCCCGGCAGGGGGCAGCGCCCCCGCGUGCCCGCUGCUCUUGGCCGACAAGAGCCCGCUGGGCCUGAAGGGCAAGGAGCCCGUGGUGUACCCCUGGAUGAAGAAGAUCCAUGUCAGCGCCGUUAACCCCAGUUAUAACGGAGGGGAGCCUAAGCGCUCUCGAACCGCCUACACCCGGCAGCAGGUCUUGGAGCUGGAGAAGGAGUUCCACUUCAAUCGAUACCUGACCCGGCGGCGCCGCAUCGAGAUCGCCCACACGCUCUGUUUGUCUGAGCGCCAGGUCAAGAUCUGGUUUCAGAACCGGAGGAUGAAGUGGAAGAAAGACCACAAACUGCCCAACACCAAGAUGCGAUCCUCCAAUUCGGCCUCGGCCUCUGCCGGCCCACCAGGGAAAGCACAAACUCAGAGCCCACACC2000000009UCCA2000000009UCCCCACCCCCACCCGAGCACCUCCACACCCGUUCCCUCCUCCAUAUAAUCUUCUAGAGAUCUUAACCAGUUUCUAUCCCUUACCUGCUUUUCUCUUCUCUUCUCCUGCUCCGUUCCUCA2000000009UCCACCCCUCCCCAUCUGGACCAUAAUAGACACCAAAACAAACCCAAAUUGGUGAAAAGAAUAAUCAAAAAGAAGACAUUAUCCGGUUAAGAGUCUGUGCUGGUUGCCACCCAAGAGAGA2000000006ACAGUUGUCCAGGAUGCUGGCUGGUGGAACAACCUGCUGGCCCGAAACAAGGCUGCCAGGUGUGGAUACCUGAGAAGG2000000006ACUACUUGGUAUCAAAUACUUUUGAGAUGGCUACAGUCAGCUAGCUGG2000000006ACAGCCCAUGCUGAGUGGGG2000000006ACAUACACUUGCAUCUUUGUUGAAAGCAGAAGAAGACAGACCCUUUCCCCACCUUCCUUACCUCCUCUUCCCCCAUUAAGGCAGCUCA2000000009UCCAAGCUUGUAUUUAACUGAAUAAAUGAGUAGACAUUGUGGACCUCACAAGAUUAUUUAAUUCUUAAGAUGUGUAGACCUUGAUGGUAGGUGUGACAUGUUAGUUUUUCUUACUUGCAUUUAUUUAAGACACUGUUACAGAGAUACUGUUGUCCCCUUCUGGGGCACGGUCUUUGGGGAGAGGGGAGUGCAUUUAGACUUAUGUGGAACUGUACAAAUUGUGAUGUGGCUACAUAGAAAGCCAUGUGCUAAGAAUAAACUCCAUUUAAAAAACAUUAAAAAUCUAAGAUUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	958	962	1082	1202	1280	1328	1348	1436
Modification Positions	Y	Y	Y	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	7:27129277:-	7:27129273:-	7:27129153:-	7:27129033:-	7:27128955:-	7:27128907:-	7:27128887:-	7:27128799:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	5aTkEfEpX8Xm msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8