General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000242261
Gene ID:	ENSG00000122691
Gene Name:	TWIST1
Sequence (UNICHARACTER ENCODING)	AACUCCCAGACACCUCGCGGGCUCUGCAGCACCGGCACCGUUUCCAGGAGGCCUGGCGGGGUGUGCGUCCAGCCGUUGGGCGCUUUCUUUUUGGЖCCUCGGGGCCAUCCACACCGUCCCCUCCCCCUCCCGCCUCCCUCCCCGCCUCCCCCGCGCGCCCUCCCCGCGGAGGUCCCUCCCGUCCGUCCUCCUGCUCUCUCCUCCGCGGGCCGCAUCGCCCGGGCCGGCGCCGCGCGCGGGGGAAGCUGGCGGGCUGAGGCGCCCCGCUCUUCUCCUCUGCCCCGGGCCCGCGAGGCCACGCGUCGCCGCUCGAGAGAUGAUGCAGGACGUGUCCAGCUCGCCAGUCUCGCCGGCCGACGACAGCCUGAGCAACAGCGAGGAAGAGCCAGACCGGCAGCAGCCGCCGAGCGGCAAGCGCGGGGGACGCAAGCGGCGCAGCAGCAGGCGCAGCGCGGGCGGCGGCGCGGGGCCCGGCGGAGCCGCGGGUGGGGGCGUCGGAGGCGGCGACGAGCCGGGCAGCCCGGCCCAGGGCAAGCGCGGCAAGAAGUCUGCGGGCUGUGGCGGCGGCGGCGGCGCGGGCGGCGGCGGCGGCAGCAGCAGCGGCGGCGGGAGUCCGCAGUCUUACGAGGAGCUGCAGACGCAGCGGGUCAUGGCCAACGUGCGGGAGCGCCAGCGCACCCAGUCGCUGAACGAGGCGUUCGCCGCGCUGCGGAAGAUCAUCCCCACGCUGCCCUCGGACAAGCUGAGCAAGAUUCAGACCCUCAAGCUGGCGGCCAGGUACAUCGACUUCCUCUACCAGGUCCUCCAGAGCGACGAGCUGGЖCUCCAAGAUGGCAAGCUGCAGCUAUGUGGCUCACGAGCGGCUCAGCUACGCCUUCUCGGUCUGGAGGAUGGAGGGGGCCUGGUCCAUGUCCGCGUCCCACUAGCAGGCGGAGCCCCCCACCCCCUCAGCAGGGCCGGAGACCUAGAUGUCAUUGUUUCCAGAGAAGGAGAAAAUGGЖCAGUCUAGAGЖCUCUGGAGCUGGAUAACUAAAAAUAAAAAUAUAUGCCAAAGAUUUUCUUGGAAAUUAGAAGAGCAAAAUCCAAAUUCAAAGAAACAGGGCGUGGGGCGCACUUUUAAAAGAGAAAGCGAGACAGGCCCGUGGЖCAGUGAUUCCCAGACGGGCAGCGGCACCAPCCUCACACCUCUGCAUUCUGAUAGAAGUCUGAACAGUUGUUUGUGUUUUUUUUUUUUUUUUUUUUGACGAAGAAUGUUUUUAUUUUUAUUUUUUUCAUGCAUGCAUUCUCAAGAGGUCGUGCCAAUCAGCCACUGAAAGGAAAGGCAUCACUAUGGЖCUUUCUCUAUUUUAAAAUGGUAACAAUCAGAGGAЖCUAUAAGAACACCUPUAGAAAUAAAAAUACUGGGAUCAAACUGGCCUGCAAAACCAUAGUCAGUUAAUUCUUUUUUUCAPCCUUCCUCUGAGGGGAAAAACAAAAAAAAACUUAAAAUACAAAAAACAACAUUCUAUUUAUUUAUUGAGGACCCAUGGUAAAAUGCAAAUAGAUCCGGUGUCUAAAUGCAUUCAUAUUUUUAUGAUUGUUUUGUAAAUAUCUUUGUAUAUUUUUCUGCAAUAAAUAAAUAUAAAAAAUUUAGAGAA
Sequence (SHORT NAMES ENCODING)	AACUCCCAGACACCUCGCGGGCUCUGCAGCACCGGCACCGUUUCCAGGAGGCCUGGCGGGGUGUGCGUCCAGCCGUUGGGCGCUUUCUUUUUGGm6ACCUCGGGGCCAUCCACACCGUCCCCUCCCCCUCCCGCCUCCCUCCCCGCCUCCCCCGCGCGCCCUCCCCGCGGAGGUCCCUCCCGUCCGUCCUCCUGCUCUCUCCUCCGCGGGCCGCAUCGCCCGGGCCGGCGCCGCGCGCGGGGGAAGCUGGCGGGCUGAGGCGCCCCGCUCUUCUCCUCUGCCCCGGGCCCGCGAGGCCACGCGUCGCCGCUCGAGAGAUGAUGCAGGACGUGUCCAGCUCGCCAGUCUCGCCGGCCGACGACAGCCUGAGCAACAGCGAGGAAGAGCCAGACCGGCAGCAGCCGCCGAGCGGCAAGCGCGGGGGACGCAAGCGGCGCAGCAGCAGGCGCAGCGCGGGCGGCGGCGCGGGGCCCGGCGGAGCCGCGGGUGGGGGCGUCGGAGGCGGCGACGAGCCGGGCAGCCCGGCCCAGGGCAAGCGCGGCAAGAAGUCUGCGGGCUGUGGCGGCGGCGGCGGCGCGGGCGGCGGCGGCGGCAGCAGCAGCGGCGGCGGGAGUCCGCAGUCUUACGAGGAGCUGCAGACGCAGCGGGUCAUGGCCAACGUGCGGGAGCGCCAGCGCACCCAGUCGCUGAACGAGGCGUUCGCCGCGCUGCGGAAGAUCAUCCCCACGCUGCCCUCGGACAAGCUGAGCAAGAUUCAGACCCUCAAGCUGGCGGCCAGGUACAUCGACUUCCUCUACCAGGUCCUCCAGAGCGACGAGCUGGm6ACUCCAAGAUGGCAAGCUGCAGCUAUGUGGCUCACGAGCGGCUCAGCUACGCCUUCUCGGUCUGGAGGAUGGAGGGGGCCUGGUCCAUGUCCGCGUCCCACUAGCAGGCGGAGCCCCCCACCCCCUCAGCAGGGCCGGAGACCUAGAUGUCAUUGUUUCCAGAGAAGGAGAAAAUGGm6ACAGUCUAGAGm6ACUCUGGAGCUGGAUAACUAAAAAUAAAAAUAUAUGCCAAAGAUUUUCUUGGAAAUUAGAAGAGCAAAAUCCAAAUUCAAAGAAACAGGGCGUGGGGCGCACUUUUAAAAGAGAAAGCGAGACAGGCCCGUGGm6ACAGUGAUUCCCAGACGGGCAGCGGCACCAYCCUCACACCUCUGCAUUCUGAUAGAAGUCUGAACAGUUGUUUGUGUUUUUUUUUUUUUUUUUUUUGACGAAGAAUGUUUUUAUUUUUAUUUUUUUCAUGCAUGCAUUCUCAAGAGGUCGUGCCAAUCAGCCACUGAAAGGAAAGGCAUCACUAUGGm6ACUUUCUCUAUUUUAAAAUGGUAACAAUCAGAGGAm6ACUAUAAGAACACCUYUAGAAAUAAAAAUACUGGGAUCAAACUGGCCUGCAAAACCAUAGUCAGUUAAUUCUUUUUUUCAYCCUUCCUCUGAGGGGAAAAACAAAAAAAAACUUAAAAUACAAAAAACAACAUUCUAUUUAUUUAUUGAGGACCCAUGGUAAAAUGCAAAUAGAUCCGGUGUCUAAAUGCAUUCAUAUUUUUAUGAUUGUUUUGUAAAUAUCUUUGUAUAUUUUUCUGCAAUAAAUAAAUAUAAAAAAUUUAGAGAA
Sequence (MODOMICS CODE ENCODING)	AACUCCCAGACACCUCGCGGGCUCUGCAGCACCGGCACCGUUUCCAGGAGGCCUGGCGGGGUGUGCGUCCAGCCGUUGGGCGCUUUCUUUUUGG2000000006ACCUCGGGGCCAUCCACACCGUCCCCUCCCCCUCCCGCCUCCCUCCCCGCCUCCCCCGCGCGCCCUCCCCGCGGAGGUCCCUCCCGUCCGUCCUCCUGCUCUCUCCUCCGCGGGCCGCAUCGCCCGGGCCGGCGCCGCGCGCGGGGGAAGCUGGCGGGCUGAGGCGCCCCGCUCUUCUCCUCUGCCCCGGGCCCGCGAGGCCACGCGUCGCCGCUCGAGAGAUGAUGCAGGACGUGUCCAGCUCGCCAGUCUCGCCGGCCGACGACAGCCUGAGCAACAGCGAGGAAGAGCCAGACCGGCAGCAGCCGCCGAGCGGCAAGCGCGGGGGACGCAAGCGGCGCAGCAGCAGGCGCAGCGCGGGCGGCGGCGCGGGGCCCGGCGGAGCCGCGGGUGGGGGCGUCGGAGGCGGCGACGAGCCGGGCAGCCCGGCCCAGGGCAAGCGCGGCAAGAAGUCUGCGGGCUGUGGCGGCGGCGGCGGCGCGGGCGGCGGCGGCGGCAGCAGCAGCGGCGGCGGGAGUCCGCAGUCUUACGAGGAGCUGCAGACGCAGCGGGUCAUGGCCAACGUGCGGGAGCGCCAGCGCACCCAGUCGCUGAACGAGGCGUUCGCCGCGCUGCGGAAGAUCAUCCCCACGCUGCCCUCGGACAAGCUGAGCAAGAUUCAGACCCUCAAGCUGGCGGCCAGGUACAUCGACUUCCUCUACCAGGUCCUCCAGAGCGACGAGCUGG2000000006ACUCCAAGAUGGCAAGCUGCAGCUAUGUGGCUCACGAGCGGCUCAGCUACGCCUUCUCGGUCUGGAGGAUGGAGGGGGCCUGGUCCAUGUCCGCGUCCCACUAGCAGGCGGAGCCCCCCACCCCCUCAGCAGGGCCGGAGACCUAGAUGUCAUUGUUUCCAGAGAAGGAGAAAAUGG2000000006ACAGUCUAGAG2000000006ACUCUGGAGCUGGAUAACUAAAAAUAAAAAUAUAUGCCAAAGAUUUUCUUGGAAAUUAGAAGAGCAAAAUCCAAAUUCAAAGAAACAGGGCGUGGGGCGCACUUUUAAAAGAGAAAGCGAGACAGGCCCGUGG2000000006ACAGUGAUUCCCAGACGGGCAGCGGCACCA2000000009UCCUCACACCUCUGCAUUCUGAUAGAAGUCUGAACAGUUGUUUGUGUUUUUUUUUUUUUUUUUUUUGACGAAGAAUGUUUUUAUUUUUAUUUUUUUCAUGCAUGCAUUCUCAAGAGGUCGUGCCAAUCAGCCACUGAAAGGAAAGGCAUCACUAUGG2000000006ACUUUCUCUAUUUUAAAAUGGUAACAAUCAGAGGA2000000006ACUAUAAGAACACCU2000000009UUAGAAAUAAAAAUACUGGGAUCAAACUGGCCUGCAAAACCAUAGUCAGUUAAUUCUUUUUUUCA2000000009UCCUUCCUCUGAGGGGAAAAACAAAAAAAAACUUAAAAUACAAAAAACAACAUUCUAUUUAUUUAUUGAGGACCCAUGGUAAAAUGCAAAUAGAUCCGGUGUCUAAAUGCAUUCAUAUUUUUAUGAUUGUUUUGUAAAUAUCUUUGUAUAUUUUUCUGCAAUAAAUAAAUAUAAAAAAUUUAGAGAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	95	821	998	1009	1142	1172	1329	1364	1379	1444
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	Y	Y
Genomic Coordinates	7:19117542:-	7:19116816:-	7:19116100:-	7:19116089:-	7:19115956:-	7:19115926:-	7:19115769:-	7:19115734:-	7:19115719:-	7:19115654:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5Nnepx5V7yHo msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL aJksAshEgQ8U Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL aJksAshEgQ8U D6ncpa2PPWj3 BkoLW2CBToyL BtsJQJ3DteUq Yfn77uLS5tv8	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo msuJfBpJvM5H VyCX26p5UBRL aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	Lny8GcCeVGc9 BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8