General Data

RNA Type	tRNA
SOTerm	SO:0000260
Original Source	tdbR00000590
Secondary Structure	((((((...((((.........)))).(((((.......)))))........))))))....
Sequence (UNICHARACTER ENCODING)	GAGAUAUUѢGUAUAAAUUUUUUGUAPAPUPCUPU!UCKAAGAAAAGGUUUAUUAUCPUACCA
Sequence (SHORT NAMES ENCODING)	GAGAUAUUpm1AGUAUAAAUUUUUUGUApYApYUpYCUpYUpcmnm5UUCpm1GAAGAAAAGGUUUAUUAUCpYUACCA
Sequence (MODOMICS CODE ENCODING)	GAGAUAUU2000001551AGUAUAAAUUUUUUGUA2000009551UA2000009551UU2000009551UCU2000009551UU2000051551UUC2000001551GAAGAAAAGGUUUAUUAUC2000009551UUACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GAGAUAUUѢGUAUAAAUUUUUU--GUAPAPUPCUPU!UCKAAGAAAAGGUUUA----------------------------------UUAUCPUACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	9	25	27	29	32	34	37	71
Position in the sequence	9	26	28	30	33	35	38	57
Modification positions	m1A	Y	Y	Y	Y	cmnm5U	m1G	Y
Level of Experimental Evidence	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS