RNA Type | tRNA |
---|---|
SOTerm | SO:0000259 |
Original Source | tdbR00000592 |
Secondary Structure | ((((((...((((.....)))).(((((.......)))))........)))))).... |
Sequence (UNICHARACTER ENCODING) | UAUACUUUѢGUUUAGGAAGAAUAPUUAPPU!UGKPGPAAAAGGGUUGUAGUAPAGCCA |
Sequence (SHORT NAMES ENCODING) | UAUACUUUpm1AGUUUAGGAAGAAUApYUUApYpYUpcmnm5UUGpm1GpYGpYAAAAGGGUUGUAGUApYAGCCA |
Sequence (MODOMICS CODE ENCODING) | UAUACUUU2000001551AGUUUAGGAAGAAUA2000009551UUUA2000009551U2000009551UU2000051551UUG2000001551G2000009551UG2000009551UAAAAGGGUUGUAGUA2000009551UAGCCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -UAUACUUUѢGUUUAGGAA------GAAUAPUUAPPU!UGKPGPAAAAGGGUUG----------------------------------UAGUAPAGCCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 9 | 27 | 31 | 32 | 34 | 37 | 38 | 40 | 71 |
---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 9 | 24 | 28 | 29 | 31 | 34 | 35 | 37 | 53 |
Modification positions | m1A | Y | Y | Y | cmnm5U | m1G | Y | Y | Y |
Level of Experimental Evidence | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 |
Level of Experimental Reliability | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS |