General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000340958
Gene ID:	ENSG00000189143
Gene Name:	CLDN4
Sequence (UNICHARACTER ENCODING)	AGAGUGCCCUGGCAGCUGUCGGCUGGAAGGAЖCUGGUCUGCUCACACUUGCUGGCUUGCGCAUCAGGЖCUGGCUUUAUCUCCUGACUCACGGUGCAAAGGUGCACUCUGCGAACGUUAAGUCCGUCCCCAGCGCUUGGAAUCCUACGGCCCCCACAGCCGGAUCCCCUCAGCCUUCCAGGUCCUCAACUCCCGUGGACGCUGAACAAUGGCCUCCAUGGGGCUACAGGUAAUGGGCAUCGCGCUGGCCGUCCUGGGCUGGCUGGCCGUCAUGCUGUGCUGCGCGCUGCCCAUGUGGCGCGUGACGGCCUUCAUCGGCAGCAACAUUGUCACCUCGCAGACCAUCUGGGAGGGCCUAUGGAUGAЖCUGCGUGGUGCAGAGCACCGGCCAGAUGCAGUGCAAGGUGUACGACUCGCUGCUGGCACUGCCGCAGGACCUGCAGGCGGCCCGCGCCCUCGUCAUCAUCAGCAUCAUCGUGGCUGCUCUGGGCGUGCUGCUGUCCGUGGUGGGGGGCAAGUGUACCAACUGCCUGGAGGAUGAAAGCGCCAAGGCCAAGACCAUGAUCGUGGCGGGCGUGGUGUUCCUGUUGGCCGGCCUUAUGGUGAUAGUGCCGGUGUCCUGGACGGCCCACAACAUCAUCCAAGACUUCUACAAUCCGCUGGUGGCCUCCGGGCAGAAGCGGGAGAUGGGUGCCUCGCUCUACGUCGGCUGGGCCGCCUCCGGCCUGCUGCUCCUUGGCGGGGGGCUGCUUUGCUGCAACUGUCCACCCCGCACAGACAAGCCUUACUCCGCCAAGUAUUCUGCUGCCCGCUCUGCUGCUGCCAGCAACUACGUGUAAGGUGCCACGGCUCCACUCUGUUCCUCUCUGCUUUGUUCUUCCCUGGЖCUGAGCUCAGCGCAGGCUGUGACCCCAGGAGGGCCCUGCCACGGGCCACUGGCUGCUGGGGACUGGGGACUGGGCAGAGACUGAGCCAGGCAGGAAGGCAGCAGCCUUCAGCCUCUCUGGCCCACUCGGЖCAACUUCCCAAGGCCGCCUCCUGCUAGCAAGAACAGAGUCCACCCUCCUCUGGAUAUUGGGGAGGGACGGAAGUGACAGGGUGUGGUGGUGGAGUGGGGAGCUGGCUUCUGCUGGCCAGGAUAGCUUAACCCUGЖCUUUGGGAUCUGCCUGCAUCGGCGUUGGCCACUGUCCCCAUUUACAUUUUCCCCACUCUGUCUGCCUGCAUCUCCUCUGUUCCGGGUAGGCCUUGAUAUCACCUCUGGGЖCUGUGCCUUGCUCACCGAAACCCGCGCCCAGGAGUAUGGCUGAGGCCUUGCCCACCCACCUGCCUGGGAAGUGCAGAGUGGAUGGACGGGUUUAGAGGGGAGGGGCGAAGGUGCUGUAAACAGGUUUGGGCAGUGGUGGGGGAGGGGGCCAGAGAGGCGGCUCAGGUUGCCCAGCUCUGUGGCCUCAGGЖCUCUCUGCCUCACCCGCUUCAGCCCAGGGCCCCUGGAGACUGAUCCCCUCUGAGUCCUCUGCCCCUUCCAAGGЖCACUAAUGAGCCUGGGAGGGUGGCAGGGAGGAGGGGACAGCUUCACCCUUGGAAGUCCUGGGGUUUUUCCUCUUCCUUCUUUGUGGUUUCUGUUUUGUAAUUUAAGAAGAGCUAUUCAUCACUGUAAUUAUUAUUAUUUUCUACAAUAAAUGGGACCUGUGCACAGGAGGAAA
Sequence (SHORT NAMES ENCODING)	AGAGUGCCCUGGCAGCUGUCGGCUGGAAGGAm6ACUGGUCUGCUCACACUUGCUGGCUUGCGCAUCAGGm6ACUGGCUUUAUCUCCUGACUCACGGUGCAAAGGUGCACUCUGCGAACGUUAAGUCCGUCCCCAGCGCUUGGAAUCCUACGGCCCCCACAGCCGGAUCCCCUCAGCCUUCCAGGUCCUCAACUCCCGUGGACGCUGAACAAUGGCCUCCAUGGGGCUACAGGUAAUGGGCAUCGCGCUGGCCGUCCUGGGCUGGCUGGCCGUCAUGCUGUGCUGCGCGCUGCCCAUGUGGCGCGUGACGGCCUUCAUCGGCAGCAACAUUGUCACCUCGCAGACCAUCUGGGAGGGCCUAUGGAUGAm6ACUGCGUGGUGCAGAGCACCGGCCAGAUGCAGUGCAAGGUGUACGACUCGCUGCUGGCACUGCCGCAGGACCUGCAGGCGGCCCGCGCCCUCGUCAUCAUCAGCAUCAUCGUGGCUGCUCUGGGCGUGCUGCUGUCCGUGGUGGGGGGCAAGUGUACCAACUGCCUGGAGGAUGAAAGCGCCAAGGCCAAGACCAUGAUCGUGGCGGGCGUGGUGUUCCUGUUGGCCGGCCUUAUGGUGAUAGUGCCGGUGUCCUGGACGGCCCACAACAUCAUCCAAGACUUCUACAAUCCGCUGGUGGCCUCCGGGCAGAAGCGGGAGAUGGGUGCCUCGCUCUACGUCGGCUGGGCCGCCUCCGGCCUGCUGCUCCUUGGCGGGGGGCUGCUUUGCUGCAACUGUCCACCCCGCACAGACAAGCCUUACUCCGCCAAGUAUUCUGCUGCCCGCUCUGCUGCUGCCAGCAACUACGUGUAAGGUGCCACGGCUCCACUCUGUUCCUCUCUGCUUUGUUCUUCCCUGGm6ACUGAGCUCAGCGCAGGCUGUGACCCCAGGAGGGCCCUGCCACGGGCCACUGGCUGCUGGGGACUGGGGACUGGGCAGAGACUGAGCCAGGCAGGAAGGCAGCAGCCUUCAGCCUCUCUGGCCCACUCGGm6ACAACUUCCCAAGGCCGCCUCCUGCUAGCAAGAACAGAGUCCACCCUCCUCUGGAUAUUGGGGAGGGACGGAAGUGACAGGGUGUGGUGGUGGAGUGGGGAGCUGGCUUCUGCUGGCCAGGAUAGCUUAACCCUGm6ACUUUGGGAUCUGCCUGCAUCGGCGUUGGCCACUGUCCCCAUUUACAUUUUCCCCACUCUGUCUGCCUGCAUCUCCUCUGUUCCGGGUAGGCCUUGAUAUCACCUCUGGGm6ACUGUGCCUUGCUCACCGAAACCCGCGCCCAGGAGUAUGGCUGAGGCCUUGCCCACCCACCUGCCUGGGAAGUGCAGAGUGGAUGGACGGGUUUAGAGGGGAGGGGCGAAGGUGCUGUAAACAGGUUUGGGCAGUGGUGGGGGAGGGGGCCAGAGAGGCGGCUCAGGUUGCCCAGCUCUGUGGCCUCAGGm6ACUCUCUGCCUCACCCGCUUCAGCCCAGGGCCCCUGGAGACUGAUCCCCUCUGAGUCCUCUGCCCCUUCCAAGGm6ACACUAAUGAGCCUGGGAGGGUGGCAGGGAGGAGGGGACAGCUUCACCCUUGGAAGUCCUGGGGUUUUUCCUCUUCCUUCUUUGUGGUUUCUGUUUUGUAAUUUAAGAAGAGCUAUUCAUCACUGUAAUUAUUAUUAUUUUCUACAAUAAAUGGGACCUGUGCACAGGAGGAAA
Sequence (MODOMICS CODE ENCODING)	AGAGUGCCCUGGCAGCUGUCGGCUGGAAGGA2000000006ACUGGUCUGCUCACACUUGCUGGCUUGCGCAUCAGG2000000006ACUGGCUUUAUCUCCUGACUCACGGUGCAAAGGUGCACUCUGCGAACGUUAAGUCCGUCCCCAGCGCUUGGAAUCCUACGGCCCCCACAGCCGGAUCCCCUCAGCCUUCCAGGUCCUCAACUCCCGUGGACGCUGAACAAUGGCCUCCAUGGGGCUACAGGUAAUGGGCAUCGCGCUGGCCGUCCUGGGCUGGCUGGCCGUCAUGCUGUGCUGCGCGCUGCCCAUGUGGCGCGUGACGGCCUUCAUCGGCAGCAACAUUGUCACCUCGCAGACCAUCUGGGAGGGCCUAUGGAUGA2000000006ACUGCGUGGUGCAGAGCACCGGCCAGAUGCAGUGCAAGGUGUACGACUCGCUGCUGGCACUGCCGCAGGACCUGCAGGCGGCCCGCGCCCUCGUCAUCAUCAGCAUCAUCGUGGCUGCUCUGGGCGUGCUGCUGUCCGUGGUGGGGGGCAAGUGUACCAACUGCCUGGAGGAUGAAAGCGCCAAGGCCAAGACCAUGAUCGUGGCGGGCGUGGUGUUCCUGUUGGCCGGCCUUAUGGUGAUAGUGCCGGUGUCCUGGACGGCCCACAACAUCAUCCAAGACUUCUACAAUCCGCUGGUGGCCUCCGGGCAGAAGCGGGAGAUGGGUGCCUCGCUCUACGUCGGCUGGGCCGCCUCCGGCCUGCUGCUCCUUGGCGGGGGGCUGCUUUGCUGCAACUGUCCACCCCGCACAGACAAGCCUUACUCCGCCAAGUAUUCUGCUGCCCGCUCUGCUGCUGCCAGCAACUACGUGUAAGGUGCCACGGCUCCACUCUGUUCCUCUCUGCUUUGUUCUUCCCUGG2000000006ACUGAGCUCAGCGCAGGCUGUGACCCCAGGAGGGCCCUGCCACGGGCCACUGGCUGCUGGGGACUGGGGACUGGGCAGAGACUGAGCCAGGCAGGAAGGCAGCAGCCUUCAGCCUCUCUGGCCCACUCGG2000000006ACAACUUCCCAAGGCCGCCUCCUGCUAGCAAGAACAGAGUCCACCCUCCUCUGGAUAUUGGGGAGGGACGGAAGUGACAGGGUGUGGUGGUGGAGUGGGGAGCUGGCUUCUGCUGGCCAGGAUAGCUUAACCCUG2000000006ACUUUGGGAUCUGCCUGCAUCGGCGUUGGCCACUGUCCCCAUUUACAUUUUCCCCACUCUGUCUGCCUGCAUCUCCUCUGUUCCGGGUAGGCCUUGAUAUCACCUCUGGG2000000006ACUGUGCCUUGCUCACCGAAACCCGCGCCCAGGAGUAUGGCUGAGGCCUUGCCCACCCACCUGCCUGGGAAGUGCAGAGUGGAUGGACGGGUUUAGAGGGGAGGGGCGAAGGUGCUGUAAACAGGUUUGGGCAGUGGUGGGGGAGGGGGCCAGAGAGGCGGCUCAGGUUGCCCAGCUCUGUGGCCUCAGG2000000006ACUCUCUGCCUCACCCGCUUCAGCCCAGGGCCCCUGGAGACUGAUCCCCUCUGAGUCCUCUGCCCCUUCCAAGG2000000006ACACUAAUGAGCCUGGGAGGGUGGCAGGGAGGAGGGGACAGCUUCACCCUUGGAAGUCCUGGGGUUUUUCCUCUUCCUUCUUUGUGGUUUCUGUUUUGUAAUUUAAGAAGAGCUAUUCAUCACUGUAAUUAUUAUUAUUUUCUACAAUAAAUGGGACCUGUGCACAGGAGGAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	32	68	364	883	1013	1148	1258	1448	1522
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	7:73831027:+	7:73831063:+	7:73831359:+	7:73831878:+	7:73832008:+	7:73832143:+	7:73832253:+	7:73832443:+	7:73832517:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VyCX26p5UBRL BsCW7emuRX7M Lny8GcCeVGc9	VyCX26p5UBRL Lny8GcCeVGc9	KRfQJWH4K5KH msuJfBpJvM5H QpiKdbVikVz2 VyCX26p5UBRL nfCHyrYzE6fB Lny8GcCeVGc9 UKen6WEino9G	KRfQJWH4K5KH msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VyCX26p5UBRL	msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VyCX26p5UBRL nfCHyrYzE6fB BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML	msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VyCX26p5UBRL nfCHyrYzE6fB KENzb7mwdBd9 Lny8GcCeVGc9 UKen6WEino9G	msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VyCX26p5UBRL Lny8GcCeVGc9	QpiKdbVikVz2 Lny8GcCeVGc9 XUkp6ghERQML