Modomics - A Database of RNA Modifications

General Data

RNA Type rRNA
SOTerm S0:0000375
Original Source J01866
Sequence (UNICHARACTER ENCODING) CGACUCUUAGCGGJGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCGCUAGCPGCGAGAAUUAAUGPGAAUU#CAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU
Sequence (SHORT NAMES ENCODING) CGACUCUUAGCGGpUmGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCGCUAGCpYGCGAGAAUUAAUGpYGAAUUpGmCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU
Sequence (MODOMICS CODE ENCODING) CGACUCUUAGCGG2000090551UGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCGCUAGC2000009551UGCGAGAAUUAAUG2000009551UGAAUU2000090551GCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the alignment 18 59 73 79
Position in the sequence 14 57 71 77
Modification positions Um pY pY Gm
Level of Experimental Evidence 5 5 5 5
Level of Experimental Reliability 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS