Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000329630
Gene ID: ENSG00000196456
Gene Name: ZNF775
Sequence (UNICHARACTER ENCODING) AGCCCGGUGCCCAAGUCGCCCUCGGGGUGGCAGUUCCCGUUAACCUUAGCCACAAAGUCAAAGAUGGCAGGAAAGGGACACAGCCGGCGCUGAUGCUGGGAGGCCUCCAGGGAUGGAGAGUGGCCUGGCUGGCAACGGCACAGGAGCUGGGCUGGUGAUGAAGGUCAAGCAGGAGAAGCCGGAGCGGCUGCUGCAGACGCUGGCGCCGCAGGCCAUGCUUGUGGAGAAGGACAAGGAGAACAUAUUUCAGCAGCACCGGGGCCUCCCGCCACGCCAGЖCCAUGGGGCGGCCUCGAGCCCUGGGGGGЖCAGGAGGЖGUCUGGGAGUCCAAGGUGGGCCCCUCCCACUGAGCAGGAUGCGGGGCUGGCAGGCCGGGCUCCCGGGUCAGCCUCCGGCCCCCUGAGCCCCUCGCUUUCCUCCGGCGAGGGUCACUUUGUAUGCCUGGЖCUGCGGGAAGAGGUUCAGCUGGUGGUCGUCCCUGAAGAUCCACCAGCGCACCCACACCGGGGAGAAGCCGUACCUCUGCGGCAAGUGCGGCAAGAGCUUCAGCCAGAAGCCGAACCUGGCGCGCCACCAGCGGCACCACACGGGCGAGCGACCCUUCUGCUGCCCCGAGUGCGCGCGGCGCUUCAGCCAGAAGCAGCACCUGCUCAAGCACCAGAAGACCCACUCCCGGCCCGCCACCCACUCGUGCCCCGAGUGCGAGCGCUGCUUCCGUCACCAGGUGGGCCUCCGCAUCCACCAGCGCGCGCACGCCCGGGЖCCGCCAGGGCUCCCGCGCCGGCCUGCACGAGCUGAUUCAGGACGCGGCGGCGCGCCGGGCCUGUCGCCUGCAGCCGGGGCCGCCGCGGGGGCGCCCCGAGUGGGCCUGGCUGGGGCUCUGCCAGGGCUGGUGGGGCCAGCCCGGGGCCCGGGCCGCGGUCUCCGGCCCCGAGGGGCCGGGCGAGCCGCGCCAGUUCAUCUGCAACGAGUGUGGCAAGAGCUUCACCUGGUGGUCGUCGCUGAACAUCCACCAGCGCAUCCACACUGGCGAGCGCCCCUAUGCGUGCCCCGAGUGCGGCCGCCGCUUCAGCCAGAAGCCCAACUUGACGCGGCACCUGCGCAACCACACAGGCGAGCGCCCGCACCCCUGCCCGCACUGUGGCCGCGGCUUCCGCCAGAAGCAGCACCUGCUCAAGCACCUGCGCACGCACCUGCCCGGCGCCCAGGCUGCGCCCUGCCCCAGCUGCGGUAAGAGCUGCCGCAGCCGCGCCGCGCUGCGCGCCCACCAGCGCGCCCACGCUGUCGCUGAGCCCGCCGUUCCGGCCGGGGAACCGGGCGACCAGCCGCAGGCCGAGGCCAUCCCGGGCUUGGCCGCGAGGCCGCGGAGCUCCCAACGGUCCCCGGGGGCCCGGGЖCACGCUGUGGGGCCGGGGЖCAAGCGGGCCUCGCUGGGCCUGGCGAGCCGCGCCAGUUCAUCUGCAACGAGUGCGGCAAGAGCUUCUCGUGGUGGUCGGCGCUCACCAUCCACCAGCGCAUCCACACGGGUGAGCGGCCCUACCCGUGCCCCGAGUGCGGCCGCCGCUUCAGCCAGAAGCCCAACCUGACGCGGCACCGGCGCAACCACACAGGCGAGCGGCCCUACCUGUGUCCCGCCUGCGGCCGCGGCUUCAGCCAGAAGCAGCACCUGCUCAAGCACCAGCGCGUGCACCGCGCGGCCCCUGCGUGCAGCCCCAAGGAGGAGGCGCGCUAGUGGЖCUGGЖCCUCAGCGGЖCCCGUGGUGGUGCGGGGGAUGUUUGCGGGGUGUGUGUGGGGAGUGGGGGUGGCCAGGAUUGCUGGCUCUUAGAACCCCUUAGAGCGGGACCGGUGGAUUCCUUAAGGCUCUGAAGGGCUGAGAЖCAGUUCUAGAAGCGUCCCAAAGGGUGCUGGGAAAGGUCCCAGCGUGGGUUGAGGGAGGAGGGAAGAUCCGAGUUCCUCACCGCGGGCCGGGAUGUGACCACCCUCUUCAGAGGUUGGACCCCAGGCUUCAAGCACCGAGUGAGGGGUCUGUUGGGGACGCUGGGAGAGUCUCUGGUGUGAAGUGGCUUAGGUCUGGЖCUGGUCAGCUGUGGCACCAGCCGGUCCUGCCCACGCUUCAGGAUGGCCGGGGGCUGCCCCUGUGGGAGAGUUGCCAAGACUCGGCGAUACCAAGGAUGGAAGCCAGAGGCUGUGGCGAGGGAGAGCCAAGCAUAUUCCCAGCACCAGGGCCACUGCUGGCACGUCGUAGACAPCCAAUAAAUAUUUUUGGAAGGA
Sequence (SHORT NAMES ENCODING) AGCCCGGUGCCCAAGUCGCCCUCGGGGUGGCAGUUCCCGUUAACCUUAGCCACAAAGUCAAAGAUGGCAGGAAAGGGACACAGCCGGCGCUGAUGCUGGGAGGCCUCCAGGGAUGGAGAGUGGCCUGGCUGGCAACGGCACAGGAGCUGGGCUGGUGAUGAAGGUCAAGCAGGAGAAGCCGGAGCGGCUGCUGCAGACGCUGGCGCCGCAGGCCAUGCUUGUGGAGAAGGACAAGGAGAACAUAUUUCAGCAGCACCGGGGCCUCCCGCCACGCCAGm6ACCAUGGGGCGGCCUCGAGCCCUGGGGGGm6ACAGGAGGm6AGUCUGGGAGUCCAAGGUGGGCCCCUCCCACUGAGCAGGAUGCGGGGCUGGCAGGCCGGGCUCCCGGGUCAGCCUCCGGCCCCCUGAGCCCCUCGCUUUCCUCCGGCGAGGGUCACUUUGUAUGCCUGGm6ACUGCGGGAAGAGGUUCAGCUGGUGGUCGUCCCUGAAGAUCCACCAGCGCACCCACACCGGGGAGAAGCCGUACCUCUGCGGCAAGUGCGGCAAGAGCUUCAGCCAGAAGCCGAACCUGGCGCGCCACCAGCGGCACCACACGGGCGAGCGACCCUUCUGCUGCCCCGAGUGCGCGCGGCGCUUCAGCCAGAAGCAGCACCUGCUCAAGCACCAGAAGACCCACUCCCGGCCCGCCACCCACUCGUGCCCCGAGUGCGAGCGCUGCUUCCGUCACCAGGUGGGCCUCCGCAUCCACCAGCGCGCGCACGCCCGGGm6ACCGCCAGGGCUCCCGCGCCGGCCUGCACGAGCUGAUUCAGGACGCGGCGGCGCGCCGGGCCUGUCGCCUGCAGCCGGGGCCGCCGCGGGGGCGCCCCGAGUGGGCCUGGCUGGGGCUCUGCCAGGGCUGGUGGGGCCAGCCCGGGGCCCGGGCCGCGGUCUCCGGCCCCGAGGGGCCGGGCGAGCCGCGCCAGUUCAUCUGCAACGAGUGUGGCAAGAGCUUCACCUGGUGGUCGUCGCUGAACAUCCACCAGCGCAUCCACACUGGCGAGCGCCCCUAUGCGUGCCCCGAGUGCGGCCGCCGCUUCAGCCAGAAGCCCAACUUGACGCGGCACCUGCGCAACCACACAGGCGAGCGCCCGCACCCCUGCCCGCACUGUGGCCGCGGCUUCCGCCAGAAGCAGCACCUGCUCAAGCACCUGCGCACGCACCUGCCCGGCGCCCAGGCUGCGCCCUGCCCCAGCUGCGGUAAGAGCUGCCGCAGCCGCGCCGCGCUGCGCGCCCACCAGCGCGCCCACGCUGUCGCUGAGCCCGCCGUUCCGGCCGGGGAACCGGGCGACCAGCCGCAGGCCGAGGCCAUCCCGGGCUUGGCCGCGAGGCCGCGGAGCUCCCAACGGUCCCCGGGGGCCCGGGm6ACACGCUGUGGGGCCGGGGm6ACAAGCGGGCCUCGCUGGGCCUGGCGAGCCGCGCCAGUUCAUCUGCAACGAGUGCGGCAAGAGCUUCUCGUGGUGGUCGGCGCUCACCAUCCACCAGCGCAUCCACACGGGUGAGCGGCCCUACCCGUGCCCCGAGUGCGGCCGCCGCUUCAGCCAGAAGCCCAACCUGACGCGGCACCGGCGCAACCACACAGGCGAGCGGCCCUACCUGUGUCCCGCCUGCGGCCGCGGCUUCAGCCAGAAGCAGCACCUGCUCAAGCACCAGCGCGUGCACCGCGCGGCCCCUGCGUGCAGCCCCAAGGAGGAGGCGCGCUAGUGGm6ACUGGm6ACCUCAGCGGm6ACCCGUGGUGGUGCGGGGGAUGUUUGCGGGGUGUGUGUGGGGAGUGGGGGUGGCCAGGAUUGCUGGCUCUUAGAACCCCUUAGAGCGGGACCGGUGGAUUCCUUAAGGCUCUGAAGGGCUGAGAm6ACAGUUCUAGAAGCGUCCCAAAGGGUGCUGGGAAAGGUCCCAGCGUGGGUUGAGGGAGGAGGGAAGAUCCGAGUUCCUCACCGCGGGCCGGGAUGUGACCACCCUCUUCAGAGGUUGGACCCCAGGCUUCAAGCACCGAGUGAGGGGUCUGUUGGGGACGCUGGGAGAGUCUCUGGUGUGAAGUGGCUUAGGUCUGGm6ACUGGUCAGCUGUGGCACCAGCCGGUCCUGCCCACGCUUCAGGAUGGCCGGGGGCUGCCCCUGUGGGAGAGUUGCCAAGACUCGGCGAUACCAAGGAUGGAAGCCAGAGGCUGUGGCGAGGGAGAGCCAAGCAUAUUCCCAGCACCAGGGCCACUGCUGGCACGUCGUAGACAYCCAAUAAAUAUUUUUGGAAGGA
Sequence (MODOMICS CODE ENCODING) AGCCCGGUGCCCAAGUCGCCCUCGGGGUGGCAGUUCCCGUUAACCUUAGCCACAAAGUCAAAGAUGGCAGGAAAGGGACACAGCCGGCGCUGAUGCUGGGAGGCCUCCAGGGAUGGAGAGUGGCCUGGCUGGCAACGGCACAGGAGCUGGGCUGGUGAUGAAGGUCAAGCAGGAGAAGCCGGAGCGGCUGCUGCAGACGCUGGCGCCGCAGGCCAUGCUUGUGGAGAAGGACAAGGAGAACAUAUUUCAGCAGCACCGGGGCCUCCCGCCACGCCAG2000000006ACCAUGGGGCGGCCUCGAGCCCUGGGGGG2000000006ACAGGAGG2000000006AGUCUGGGAGUCCAAGGUGGGCCCCUCCCACUGAGCAGGAUGCGGGGCUGGCAGGCCGGGCUCCCGGGUCAGCCUCCGGCCCCCUGAGCCCCUCGCUUUCCUCCGGCGAGGGUCACUUUGUAUGCCUGG2000000006ACUGCGGGAAGAGGUUCAGCUGGUGGUCGUCCCUGAAGAUCCACCAGCGCACCCACACCGGGGAGAAGCCGUACCUCUGCGGCAAGUGCGGCAAGAGCUUCAGCCAGAAGCCGAACCUGGCGCGCCACCAGCGGCACCACACGGGCGAGCGACCCUUCUGCUGCCCCGAGUGCGCGCGGCGCUUCAGCCAGAAGCAGCACCUGCUCAAGCACCAGAAGACCCACUCCCGGCCCGCCACCCACUCGUGCCCCGAGUGCGAGCGCUGCUUCCGUCACCAGGUGGGCCUCCGCAUCCACCAGCGCGCGCACGCCCGGG2000000006ACCGCCAGGGCUCCCGCGCCGGCCUGCACGAGCUGAUUCAGGACGCGGCGGCGCGCCGGGCCUGUCGCCUGCAGCCGGGGCCGCCGCGGGGGCGCCCCGAGUGGGCCUGGCUGGGGCUCUGCCAGGGCUGGUGGGGCCAGCCCGGGGCCCGGGCCGCGGUCUCCGGCCCCGAGGGGCCGGGCGAGCCGCGCCAGUUCAUCUGCAACGAGUGUGGCAAGAGCUUCACCUGGUGGUCGUCGCUGAACAUCCACCAGCGCAUCCACACUGGCGAGCGCCCCUAUGCGUGCCCCGAGUGCGGCCGCCGCUUCAGCCAGAAGCCCAACUUGACGCGGCACCUGCGCAACCACACAGGCGAGCGCCCGCACCCCUGCCCGCACUGUGGCCGCGGCUUCCGCCAGAAGCAGCACCUGCUCAAGCACCUGCGCACGCACCUGCCCGGCGCCCAGGCUGCGCCCUGCCCCAGCUGCGGUAAGAGCUGCCGCAGCCGCGCCGCGCUGCGCGCCCACCAGCGCGCCCACGCUGUCGCUGAGCCCGCCGUUCCGGCCGGGGAACCGGGCGACCAGCCGCAGGCCGAGGCCAUCCCGGGCUUGGCCGCGAGGCCGCGGAGCUCCCAACGGUCCCCGGGGGCCCGGG2000000006ACACGCUGUGGGGCCGGGG2000000006ACAAGCGGGCCUCGCUGGGCCUGGCGAGCCGCGCCAGUUCAUCUGCAACGAGUGCGGCAAGAGCUUCUCGUGGUGGUCGGCGCUCACCAUCCACCAGCGCAUCCACACGGGUGAGCGGCCCUACCCGUGCCCCGAGUGCGGCCGCCGCUUCAGCCAGAAGCCCAACCUGACGCGGCACCGGCGCAACCACACAGGCGAGCGGCCCUACCUGUGUCCCGCCUGCGGCCGCGGCUUCAGCCAGAAGCAGCACCUGCUCAAGCACCAGCGCGUGCACCGCGCGGCCCCUGCGUGCAGCCCCAAGGAGGAGGCGCGCUAGUGG2000000006ACUGG2000000006ACCUCAGCGG2000000006ACCCGUGGUGGUGCGGGGGAUGUUUGCGGGGUGUGUGUGGGGAGUGGGGGUGGCCAGGAUUGCUGGCUCUUAGAACCCCUUAGAGCGGGACCGGUGGAUUCCUUAAGGCUCUGAAGGGCUGAGA2000000006ACAGUUCUAGAAGCGUCCCAAAGGGUGCUGGGAAAGGUCCCAGCGUGGGUUGAGGGAGGAGGGAAGAUCCGAGUUCCUCACCGCGGGCCGGGAUGUGACCACCCUCUUCAGAGGUUGGACCCCAGGCUUCAAGCACCGAGUGAGGGGUCUGUUGGGGACGCUGGGAGAGUCUCUGGUGUGAAGUGGCUUAGGUCUGG2000000006ACUGGUCAGCUGUGGCACCAGCCGGUCCUGCCCACGCUUCAGGAUGGCCGGGGGCUGCCCCUGUGGGAGAGUUGCCAAGACUCGGCGAUACCAAGGAUGGAAGCCAGAGGCUGUGGCGAGGGAGAGCCAAGCAUAUUCCCAGCACCAGGGCCACUGCUGGCACGUCGUAGACA2000000009UCCAAUAAAUAUUUUUGGAAGGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 278 307 315 444 759 1392 1411 1730 1735 1745 1869 2066 2239
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A Y
Genomic Coordinates 7:150396647:+ 7:150396676:+ 7:150396684:+ 7:150396813:+ 7:150397128:+ 7:150397761:+ 7:150397780:+ 7:150398099:+ 7:150398104:+ 7:150398114:+ 7:150398238:+ 7:150398435:+ 7:150398608:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
aHkqKEJkRYyb
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
5Nnepx5V7yHo
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
5Nnepx5V7yHo
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Mg9GixDBFQAT
msuJfBpJvM5H
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
5Nnepx5V7yHo
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
5Nnepx5V7yHo
6UuHp6YApVKv
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
JkWoGWVwjNda
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
VyCX26p5UBRL
WdHxkJGRmFxn
JkWoGWVwjNda
Yfn77uLS5tv8
JkWoGWVwjNda
Yfn77uLS5tv8