Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000484496
Gene ID: ENSG00000106348
Gene Name: IMPDH1
Sequence (UNICHARACTER ENCODING) AGCCCUAGAUUGGACCUCGCUACACACCCGACGACACCCCGUUCAGAACUAUCUUCAGUGGUCUUACUGGCAGGUGUUGGUGUCCAGAUGGAUCGCCUUCGCAGGGCUAGCAUGGCGGACUACCUGAUCAGCGGCGGCACCGGCUACGUGCCCGAGGAUGGGCUCACCGCGCAGCAGCUCUUCGCCAGCGCCGACGGCCUCACCUACAACGACUUCCUGAUUCUCCCAGGAUUCAUAGACUUCAUAGCUGAUGAGGUGGACCUGACCUCAGCCCUGACCCGGAAGAUCACGCUGAAGACGCCACUGAUCUCCUCCCCCAUGGACACUGUGACAGAGGCUGACAUGGCCAUUGCCAUGGCUCUGAUGGGAGGUAUUGGUUUCAUUCACCACAACUGCACCCCAGAGUUCCAGGCCAACGAGGUGCGGAAGGUCAAGUUUGAACAGGGCUUCAUCACGGACCCUGUGGUGCUGAGCCCCUCGCACACUGUGGGCGAUGUGCUGGAGGCCAAGAUGCGGCAUGGCUUCUCUGGCAUCCCCAUCACUGAGACGGGCACCAUGGGCAGCAAGCUGGUGGGCAUCGUCACCUCCCGAGACAUCGACUUUCUUGCUGAGAAGGACCACACCACCCPCCUCAGUGAGGCAAAUGUUCCUGGCCCCACAGGUGAUGACGCCAAGGAUUGAACUGGUGGUGGCUCCAGCAGGUGUGACGUUGAAAGAGGCAAAUGAGAUCCUGCAGCGUAGCAAGAAAGGGAAGCUGCCUAUCGUCAAUGAUUGCGAUGAGCUGGUGGCCAUCAUCGCCCGCACCGACCUGAAGAAGAACCGAGACUACCCUCUGGCCUCCAAGGAUUCCCAGAAGCAGCUGCUCUGUGGGGCAGCUGUGGGCACCCGUGAGGAUGACAAAUACCGUCUGGACCUGCUCACCCAGGCGGGCGUCGACGUCAUAGUCUUGGACUCGUCCCAAGGGAAUUCGGUGUAUCAGAUCGCCAUGGUGCAUUACAUCAAACAGAAGUACCCCCACCPCCAGGUGAUUGGGGGGAACGPGGUGACAGCAGCCCAGGCCAAGAACCUGAUUGAUGCUGGUGUGGACGGGCUGCGCGUGGGCAUGGGCUGCGGCUCCAUCUGCAUCACCCAGGAAGUGAUGGCCUGUGGUCGGCCCCAGGGCACUGCUGUGUACAAGGUGGCUGAGUAUGCCCGGCGCUUUGGUGUGCCCAUCAUAGCCGAUGGCGGCAPCCAGACCGUGGGACACGUGGUCAAGGCCCUGGCCCUUGGAGCCUCCACAGUGAUGAUGGGCUCCCUGCUGGCCGCCACUACGGAGGCCCCUGGCGAGUACUUCUUCUCAGACGGGGUGCGGCUCAAGAAGUACCGGGGCAUGGGCUCACUGGAUGCCAUGGAGAAGAGCAGCAGCAGCCAGAAACGAUACUUCAGCGAGGGGGAUAAAGUGAAGAUCGCGCAGGGUGUCUCGGGCUCCAPCCAGGACAAAGGAUCCAUUCAGAAGUUCGUGCCCUACCUCAUAGCAGGCAPCCAACACGGCUGCCAGGAUAUCGGGGCCCGCAGCCUGUCUGUCCUUCGGUCCAUGAUGUACUCAGGAGAGCUCAAGUUUGAGAAGCGGACCAUGUCGGCCCAGAUUGAGGGUGGUGUCCAUGGCCUGCACUCCUAUACCUUUCUGCCGUUUACGAAAAGCGGCUGUACUGAGGACAGCGGUGGAGGCCGAGGUGGUGGAGGGGAUGCACCCCAGUGUCCACUUUUGGGCACAGCCUCCCUCCAPAACUGAGUGGUCCACAGAUPUGCACUACGGGUUCUCCAGCUCCUUUCCAGGCAGAGAGGAGGGGAGGUCCUGAGGGGACUGCUGCCCCUCACUCGGCAUCCCCUGCAGAGUCAGGACUGCUCCCGGGGCCAGGCUGCCCUGGGAGCCCCCCPCCGAGCCCAGCCAGCCAGGCUCUCAGGCCCUGCGCCUGCCUCAGGUCUUUCUUGCUGCAGCCUGCUCCAGCCUGGCCCCCACCCCAGGGGCAGGCGGCCCCUCCUGGCUUCUCCUGUAGGGCACCUCCCUGCCCCUAGCCUCCCAGGAAAUGGUGCUCUCCUGGCCCUGCCUCUGGCCCUUCCCGGGCCGCUGCCCCUCAGCCAUGUGGCACUUCUGAGCUCCUGACCUAGGCCAAGGGGAGGUCUCUGCCCCCUUCCCCGGCCCUGGGCUACCCUUGGGUCCUGCUCCUCAGGCCGCUCCCCUGUCCCUGGCCAUGGGUAGGAGACUGCCCUGGUCAUGGCCGCCUGCCUGUCAUUCCUGACUCACCACCGUCCCCAGGUGAACCAUUCCPCCCUUCUCCUCAGCUGCAGUCGAAGGCUPUAЖCUUUGCACACUUGGGAUCACAGUUGCGUCAUUGUGUAUUAAAUACUUGGAAUAAAUCAAGCAGGUCUCAACGCCPCCACUA
Sequence (SHORT NAMES ENCODING) AGCCCUAGAUUGGACCUCGCUACACACCCGACGACACCCCGUUCAGAACUAUCUUCAGUGGUCUUACUGGCAGGUGUUGGUGUCCAGAUGGAUCGCCUUCGCAGGGCUAGCAUGGCGGACUACCUGAUCAGCGGCGGCACCGGCUACGUGCCCGAGGAUGGGCUCACCGCGCAGCAGCUCUUCGCCAGCGCCGACGGCCUCACCUACAACGACUUCCUGAUUCUCCCAGGAUUCAUAGACUUCAUAGCUGAUGAGGUGGACCUGACCUCAGCCCUGACCCGGAAGAUCACGCUGAAGACGCCACUGAUCUCCUCCCCCAUGGACACUGUGACAGAGGCUGACAUGGCCAUUGCCAUGGCUCUGAUGGGAGGUAUUGGUUUCAUUCACCACAACUGCACCCCAGAGUUCCAGGCCAACGAGGUGCGGAAGGUCAAGUUUGAACAGGGCUUCAUCACGGACCCUGUGGUGCUGAGCCCCUCGCACACUGUGGGCGAUGUGCUGGAGGCCAAGAUGCGGCAUGGCUUCUCUGGCAUCCCCAUCACUGAGACGGGCACCAUGGGCAGCAAGCUGGUGGGCAUCGUCACCUCCCGAGACAUCGACUUUCUUGCUGAGAAGGACCACACCACCCYCCUCAGUGAGGCAAAUGUUCCUGGCCCCACAGGUGAUGACGCCAAGGAUUGAACUGGUGGUGGCUCCAGCAGGUGUGACGUUGAAAGAGGCAAAUGAGAUCCUGCAGCGUAGCAAGAAAGGGAAGCUGCCUAUCGUCAAUGAUUGCGAUGAGCUGGUGGCCAUCAUCGCCCGCACCGACCUGAAGAAGAACCGAGACUACCCUCUGGCCUCCAAGGAUUCCCAGAAGCAGCUGCUCUGUGGGGCAGCUGUGGGCACCCGUGAGGAUGACAAAUACCGUCUGGACCUGCUCACCCAGGCGGGCGUCGACGUCAUAGUCUUGGACUCGUCCCAAGGGAAUUCGGUGUAUCAGAUCGCCAUGGUGCAUUACAUCAAACAGAAGUACCCCCACCYCCAGGUGAUUGGGGGGAACGYGGUGACAGCAGCCCAGGCCAAGAACCUGAUUGAUGCUGGUGUGGACGGGCUGCGCGUGGGCAUGGGCUGCGGCUCCAUCUGCAUCACCCAGGAAGUGAUGGCCUGUGGUCGGCCCCAGGGCACUGCUGUGUACAAGGUGGCUGAGUAUGCCCGGCGCUUUGGUGUGCCCAUCAUAGCCGAUGGCGGCAYCCAGACCGUGGGACACGUGGUCAAGGCCCUGGCCCUUGGAGCCUCCACAGUGAUGAUGGGCUCCCUGCUGGCCGCCACUACGGAGGCCCCUGGCGAGUACUUCUUCUCAGACGGGGUGCGGCUCAAGAAGUACCGGGGCAUGGGCUCACUGGAUGCCAUGGAGAAGAGCAGCAGCAGCCAGAAACGAUACUUCAGCGAGGGGGAUAAAGUGAAGAUCGCGCAGGGUGUCUCGGGCUCCAYCCAGGACAAAGGAUCCAUUCAGAAGUUCGUGCCCUACCUCAUAGCAGGCAYCCAACACGGCUGCCAGGAUAUCGGGGCCCGCAGCCUGUCUGUCCUUCGGUCCAUGAUGUACUCAGGAGAGCUCAAGUUUGAGAAGCGGACCAUGUCGGCCCAGAUUGAGGGUGGUGUCCAUGGCCUGCACUCCUAUACCUUUCUGCCGUUUACGAAAAGCGGCUGUACUGAGGACAGCGGUGGAGGCCGAGGUGGUGGAGGGGAUGCACCCCAGUGUCCACUUUUGGGCACAGCCUCCCUCCAYAACUGAGUGGUCCACAGAUYUGCACUACGGGUUCUCCAGCUCCUUUCCAGGCAGAGAGGAGGGGAGGUCCUGAGGGGACUGCUGCCCCUCACUCGGCAUCCCCUGCAGAGUCAGGACUGCUCCCGGGGCCAGGCUGCCCUGGGAGCCCCCCYCCGAGCCCAGCCAGCCAGGCUCUCAGGCCCUGCGCCUGCCUCAGGUCUUUCUUGCUGCAGCCUGCUCCAGCCUGGCCCCCACCCCAGGGGCAGGCGGCCCCUCCUGGCUUCUCCUGUAGGGCACCUCCCUGCCCCUAGCCUCCCAGGAAAUGGUGCUCUCCUGGCCCUGCCUCUGGCCCUUCCCGGGCCGCUGCCCCUCAGCCAUGUGGCACUUCUGAGCUCCUGACCUAGGCCAAGGGGAGGUCUCUGCCCCCUUCCCCGGCCCUGGGCUACCCUUGGGUCCUGCUCCUCAGGCCGCUCCCCUGUCCCUGGCCAUGGGUAGGAGACUGCCCUGGUCAUGGCCGCCUGCCUGUCAUUCCUGACUCACCACCGUCCCCAGGUGAACCAUUCCYCCCUUCUCCUCAGCUGCAGUCGAAGGCUYUAm6ACUUUGCACACUUGGGAUCACAGUUGCGUCAUUGUGUAUUAAAUACUUGGAAUAAAUCAAGCAGGUCUCAACGCCYCCACUA
Sequence (MODOMICS CODE ENCODING) AGCCCUAGAUUGGACCUCGCUACACACCCGACGACACCCCGUUCAGAACUAUCUUCAGUGGUCUUACUGGCAGGUGUUGGUGUCCAGAUGGAUCGCCUUCGCAGGGCUAGCAUGGCGGACUACCUGAUCAGCGGCGGCACCGGCUACGUGCCCGAGGAUGGGCUCACCGCGCAGCAGCUCUUCGCCAGCGCCGACGGCCUCACCUACAACGACUUCCUGAUUCUCCCAGGAUUCAUAGACUUCAUAGCUGAUGAGGUGGACCUGACCUCAGCCCUGACCCGGAAGAUCACGCUGAAGACGCCACUGAUCUCCUCCCCCAUGGACACUGUGACAGAGGCUGACAUGGCCAUUGCCAUGGCUCUGAUGGGAGGUAUUGGUUUCAUUCACCACAACUGCACCCCAGAGUUCCAGGCCAACGAGGUGCGGAAGGUCAAGUUUGAACAGGGCUUCAUCACGGACCCUGUGGUGCUGAGCCCCUCGCACACUGUGGGCGAUGUGCUGGAGGCCAAGAUGCGGCAUGGCUUCUCUGGCAUCCCCAUCACUGAGACGGGCACCAUGGGCAGCAAGCUGGUGGGCAUCGUCACCUCCCGAGACAUCGACUUUCUUGCUGAGAAGGACCACACCACCC2000000009UCCUCAGUGAGGCAAAUGUUCCUGGCCCCACAGGUGAUGACGCCAAGGAUUGAACUGGUGGUGGCUCCAGCAGGUGUGACGUUGAAAGAGGCAAAUGAGAUCCUGCAGCGUAGCAAGAAAGGGAAGCUGCCUAUCGUCAAUGAUUGCGAUGAGCUGGUGGCCAUCAUCGCCCGCACCGACCUGAAGAAGAACCGAGACUACCCUCUGGCCUCCAAGGAUUCCCAGAAGCAGCUGCUCUGUGGGGCAGCUGUGGGCACCCGUGAGGAUGACAAAUACCGUCUGGACCUGCUCACCCAGGCGGGCGUCGACGUCAUAGUCUUGGACUCGUCCCAAGGGAAUUCGGUGUAUCAGAUCGCCAUGGUGCAUUACAUCAAACAGAAGUACCCCCACC2000000009UCCAGGUGAUUGGGGGGAACG2000000009UGGUGACAGCAGCCCAGGCCAAGAACCUGAUUGAUGCUGGUGUGGACGGGCUGCGCGUGGGCAUGGGCUGCGGCUCCAUCUGCAUCACCCAGGAAGUGAUGGCCUGUGGUCGGCCCCAGGGCACUGCUGUGUACAAGGUGGCUGAGUAUGCCCGGCGCUUUGGUGUGCCCAUCAUAGCCGAUGGCGGCA2000000009UCCAGACCGUGGGACACGUGGUCAAGGCCCUGGCCCUUGGAGCCUCCACAGUGAUGAUGGGCUCCCUGCUGGCCGCCACUACGGAGGCCCCUGGCGAGUACUUCUUCUCAGACGGGGUGCGGCUCAAGAAGUACCGGGGCAUGGGCUCACUGGAUGCCAUGGAGAAGAGCAGCAGCAGCCAGAAACGAUACUUCAGCGAGGGGGAUAAAGUGAAGAUCGCGCAGGGUGUCUCGGGCUCCA2000000009UCCAGGACAAAGGAUCCAUUCAGAAGUUCGUGCCCUACCUCAUAGCAGGCA2000000009UCCAACACGGCUGCCAGGAUAUCGGGGCCCGCAGCCUGUCUGUCCUUCGGUCCAUGAUGUACUCAGGAGAGCUCAAGUUUGAGAAGCGGACCAUGUCGGCCCAGAUUGAGGGUGGUGUCCAUGGCCUGCACUCCUAUACCUUUCUGCCGUUUACGAAAAGCGGCUGUACUGAGGACAGCGGUGGAGGCCGAGGUGGUGGAGGGGAUGCACCCCAGUGUCCACUUUUGGGCACAGCCUCCCUCCA2000000009UAACUGAGUGGUCCACAGAU2000000009UUGCACUACGGGUUCUCCAGCUCCUUUCCAGGCAGAGAGGAGGGGAGGUCCUGAGGGGACUGCUGCCCCUCACUCGGCAUCCCCUGCAGAGUCAGGACUGCUCCCGGGGCCAGGCUGCCCUGGGAGCCCCCC2000000009UCCGAGCCCAGCCAGCCAGGCUCUCAGGCCCUGCGCCUGCCUCAGGUCUUUCUUGCUGCAGCCUGCUCCAGCCUGGCCCCCACCCCAGGGGCAGGCGGCCCCUCCUGGCUUCUCCUGUAGGGCACCUCCCUGCCCCUAGCCUCCCAGGAAAUGGUGCUCUCCUGGCCCUGCCUCUGGCCCUUCCCGGGCCGCUGCCCCUCAGCCAUGUGGCACUUCUGAGCUCCUGACCUAGGCCAAGGGGAGGUCUCUGCCCCCUUCCCCGGCCCUGGGCUACCCUUGGGUCCUGCUCCUCAGGCCGCUCCCCUGUCCCUGGCCAUGGGUAGGAGACUGCCCUGGUCAUGGCCGCCUGCCUGUCAUUCCUGACUCACCACCGUCCCCAGGUGAACCAUUCC2000000009UCCCUUCUCCUCAGCUGCAGUCGAAGGCU2000000009UUA2000000006ACUUUGCACACUUGGGAUCACAGUUGCGUCAUUGUGUAUUAAAUACUUGGAAUAAAUCAAGCAGGUCUCAACGCC2000000009UCCACUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 629 1020 1041 1230 1470 1521 1765 1785 1917 2309 2338 2341 2416
Modification Positions Y Y Y Y Y Y Y Y Y Y Y m6A Y
Genomic Coordinates 7:128400343:- 7:128396952:- 7:128396695:- 7:128395181:- 7:128394555:- 7:128394504:- 7:128392934:- 7:128392914:- 7:128392782:- 7:128392390:- 7:128392361:- 7:128392358:- 7:128392283:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
S9vNeQQYrhac
JkWoGWVwjNda