Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000455086
Gene ID: ENSG00000070669
Gene Name: ASNS
Sequence (UNICHARACTER ENCODING) CCUGGCCUCAGCCCGCCACAUCACCCUGACCUGCUUACGCCCAGAUGCAACЖGCAUUUUGAAUUUGAAUACCAGACCAAAGUGGAUGGUGAGAUAAUCCUUCAUCUPUAUGACAAAGGAGGAAUUGAGCAAACAAUUUGUAUGUUGGAUGGUGUGUUUGCAUUUGUUUUACUGGAUACUGCCAAUAAGAAAGUGUUCCUGGGUAGAGAUACAUAUGGAGUCAGACCUUUGUUUAAAGCAAUGACAGAAGAUGGAUUUUUGGCUGUAUGUPCAGAAGCUAAAGGUCUUGUUACЖUUGAAGCACUCCGCGACUCCCUUUUUAAAAGUGGAGCCUUUUCUUCCUGGЖCACUAUGAAGUUUUGGAUUUAAAGCCAAAUGGCAAAGUUGCAUCCGUGGAAAUGGUUAAAUAUCAUCACUGUCGGGAUGUACCCCUGCACGCCCUCUAUGACAAUGUGGAGAAACUCUUUCCAGGUUUUGAGAUAGAAACUGUGAAGAACAACCUCAGGAUCCUUUUUAAUAAUGCUGUAAAGAAACGUUUGAUGACAGACAGAAGGAUUGGCUGCCUUUUAUCAGGGGGCUUGGACUCCAGCUUGGUUGCUGCCACUCUGUUGAAGCAGCUGAAAGAAGCCCAAGUACAGUAUCCUCUCCAGACAUUUGCAAUUGGCAUGGAAGACAGCCCCGAUUUACUGGCUGCUAGAAAGGUGGCAGAUCAUAUUGGAAGUGAACAUUAUGAAGUCCUUUUUAACUCUGAGGAAGGCAUUCAGGCUCUGGAUGAAGUCAUAUUUUCCUUGGAAACUUAUGACAUUACЖACAGUUCGUGCUUCAGUAGGUAUGUAUUUAAUUUCCAAGUAUAUUCGGAAGAACACAGAUAGCGUGGUGAUCUUCUCUGGAGAAGGAUCAGAUGAACUUACGCAGGGUUACAUAUAUUUUCACAAGGCUCCUUCUCCUGAAAAAGCCGAGGAGGAGAGUGAGAGGCUUCUGAGGGAACUCUAUUUGUUUGAUGUUCUCCGCGCAGAUCGAACUACUGCUGCCCAUGGUCUUGAACUGAGAGUCCCAUUUCUAGAUCAUCGAUUUUCUUCCUAUUACUUGUCUCUGCCACCЖGAAAUGAGAAUUCCAAAGAAUGGGAUAGAAAAACAUCUCCUGAGAGAGACGUUUGAGGAUUCCAAUCUGAUACCCAAAGAGAUUCUCUGGCGACCAAAAGAAGCCUUCAGUGAUGGAAUAЖCUUCAGUUAAGAAUUCCUGGUUUAAGAUUUUACAGGAAUACGUUGAACAUCAGGUUGAUGAUGCAAUGAUGGCAAAUGCAGCCCAGAAAUUUCCCUUCAAUACUCCUAAAACCAAAGAAGGAUAUUACUACCGUCAAGUCUUUGAACGCCAUUACCCAGGCCGGGCUGACUGGCUGAGCCAUUACUGGAUGCCCAAGUGGAUCAAUGCCACUGACCCUUCUGCCCGCACGCUGACCCACUACЖAGUCAGCUGUCAAAGCUUAGGUGGUCUPUAUGCUGUAAUGUGAAAGCAAAUAUUUCUUCGUGUUGGAUGGGGACUGUGGGUAGAUAGGGGAACAAUGAGAGUCAACUCAGGCUAЖCUUGGGUGUGAA
Sequence (SHORT NAMES ENCODING) CCUGGCCUCAGCCCGCCACAUCACCCUGACCUGCUUACGCCCAGAUGCAACm6AGCAUUUUGAAUUUGAAUACCAGACCAAAGUGGAUGGUGAGAUAAUCCUUCAUCUYUAUGACAAAGGAGGAAUUGAGCAAACAAUUUGUAUGUUGGAUGGUGUGUUUGCAUUUGUUUUACUGGAUACUGCCAAUAAGAAAGUGUUCCUGGGUAGAGAUACAUAUGGAGUCAGACCUUUGUUUAAAGCAAUGACAGAAGAUGGAUUUUUGGCUGUAUGUYCAGAAGCUAAAGGUCUUGUUACm6AUUGAAGCACUCCGCGACUCCCUUUUUAAAAGUGGAGCCUUUUCUUCCUGGm6ACACUAUGAAGUUUUGGAUUUAAAGCCAAAUGGCAAAGUUGCAUCCGUGGAAAUGGUUAAAUAUCAUCACUGUCGGGAUGUACCCCUGCACGCCCUCUAUGACAAUGUGGAGAAACUCUUUCCAGGUUUUGAGAUAGAAACUGUGAAGAACAACCUCAGGAUCCUUUUUAAUAAUGCUGUAAAGAAACGUUUGAUGACAGACAGAAGGAUUGGCUGCCUUUUAUCAGGGGGCUUGGACUCCAGCUUGGUUGCUGCCACUCUGUUGAAGCAGCUGAAAGAAGCCCAAGUACAGUAUCCUCUCCAGACAUUUGCAAUUGGCAUGGAAGACAGCCCCGAUUUACUGGCUGCUAGAAAGGUGGCAGAUCAUAUUGGAAGUGAACAUUAUGAAGUCCUUUUUAACUCUGAGGAAGGCAUUCAGGCUCUGGAUGAAGUCAUAUUUUCCUUGGAAACUUAUGACAUUACm6AACAGUUCGUGCUUCAGUAGGUAUGUAUUUAAUUUCCAAGUAUAUUCGGAAGAACACAGAUAGCGUGGUGAUCUUCUCUGGAGAAGGAUCAGAUGAACUUACGCAGGGUUACAUAUAUUUUCACAAGGCUCCUUCUCCUGAAAAAGCCGAGGAGGAGAGUGAGAGGCUUCUGAGGGAACUCUAUUUGUUUGAUGUUCUCCGCGCAGAUCGAACUACUGCUGCCCAUGGUCUUGAACUGAGAGUCCCAUUUCUAGAUCAUCGAUUUUCUUCCUAUUACUUGUCUCUGCCACCm6AGAAAUGAGAAUUCCAAAGAAUGGGAUAGAAAAACAUCUCCUGAGAGAGACGUUUGAGGAUUCCAAUCUGAUACCCAAAGAGAUUCUCUGGCGACCAAAAGAAGCCUUCAGUGAUGGAAUAm6ACUUCAGUUAAGAAUUCCUGGUUUAAGAUUUUACAGGAAUACGUUGAACAUCAGGUUGAUGAUGCAAUGAUGGCAAAUGCAGCCCAGAAAUUUCCCUUCAAUACUCCUAAAACCAAAGAAGGAUAUUACUACCGUCAAGUCUUUGAACGCCAUUACCCAGGCCGGGCUGACUGGCUGAGCCAUUACUGGAUGCCCAAGUGGAUCAAUGCCACUGACCCUUCUGCCCGCACGCUGACCCACUACm6AAGUCAGCUGUCAAAGCUUAGGUGGUCUYUAUGCUGUAAUGUGAAAGCAAAUAUUUCUUCGUGUUGGAUGGGGACUGUGGGUAGAUAGGGGAACAAUGAGAGUCAACUCAGGCUAm6ACUUGGGUGUGAA
Sequence (MODOMICS CODE ENCODING) CCUGGCCUCAGCCCGCCACAUCACCCUGACCUGCUUACGCCCAGAUGCAAC2000000006AGCAUUUUGAAUUUGAAUACCAGACCAAAGUGGAUGGUGAGAUAAUCCUUCAUCU2000000009UUAUGACAAAGGAGGAAUUGAGCAAACAAUUUGUAUGUUGGAUGGUGUGUUUGCAUUUGUUUUACUGGAUACUGCCAAUAAGAAAGUGUUCCUGGGUAGAGAUACAUAUGGAGUCAGACCUUUGUUUAAAGCAAUGACAGAAGAUGGAUUUUUGGCUGUAUGU2000000009UCAGAAGCUAAAGGUCUUGUUAC2000000006AUUGAAGCACUCCGCGACUCCCUUUUUAAAAGUGGAGCCUUUUCUUCCUGG2000000006ACACUAUGAAGUUUUGGAUUUAAAGCCAAAUGGCAAAGUUGCAUCCGUGGAAAUGGUUAAAUAUCAUCACUGUCGGGAUGUACCCCUGCACGCCCUCUAUGACAAUGUGGAGAAACUCUUUCCAGGUUUUGAGAUAGAAACUGUGAAGAACAACCUCAGGAUCCUUUUUAAUAAUGCUGUAAAGAAACGUUUGAUGACAGACAGAAGGAUUGGCUGCCUUUUAUCAGGGGGCUUGGACUCCAGCUUGGUUGCUGCCACUCUGUUGAAGCAGCUGAAAGAAGCCCAAGUACAGUAUCCUCUCCAGACAUUUGCAAUUGGCAUGGAAGACAGCCCCGAUUUACUGGCUGCUAGAAAGGUGGCAGAUCAUAUUGGAAGUGAACAUUAUGAAGUCCUUUUUAACUCUGAGGAAGGCAUUCAGGCUCUGGAUGAAGUCAUAUUUUCCUUGGAAACUUAUGACAUUAC2000000006AACAGUUCGUGCUUCAGUAGGUAUGUAUUUAAUUUCCAAGUAUAUUCGGAAGAACACAGAUAGCGUGGUGAUCUUCUCUGGAGAAGGAUCAGAUGAACUUACGCAGGGUUACAUAUAUUUUCACAAGGCUCCUUCUCCUGAAAAAGCCGAGGAGGAGAGUGAGAGGCUUCUGAGGGAACUCUAUUUGUUUGAUGUUCUCCGCGCAGAUCGAACUACUGCUGCCCAUGGUCUUGAACUGAGAGUCCCAUUUCUAGAUCAUCGAUUUUCUUCCUAUUACUUGUCUCUGCCACC2000000006AGAAAUGAGAAUUCCAAAGAAUGGGAUAGAAAAACAUCUCCUGAGAGAGACGUUUGAGGAUUCCAAUCUGAUACCCAAAGAGAUUCUCUGGCGACCAAAAGAAGCCUUCAGUGAUGGAAUA2000000006ACUUCAGUUAAGAAUUCCUGGUUUAAGAUUUUACAGGAAUACGUUGAACAUCAGGUUGAUGAUGCAAUGAUGGCAAAUGCAGCCCAGAAAUUUCCCUUCAAUACUCCUAAAACCAAAGAAGGAUAUUACUACCGUCAAGUCUUUGAACGCCAUUACCCAGGCCGGGCUGACUGGCUGAGCCAUUACUGGAUGCCCAAGUGGAUCAAUGCCACUGACCCUUCUGCCCGCACGCUGACCCACUAC2000000006AAGUCAGCUGUCAAAGCUUAGGUGGUCU2000000009UUAUGCUGUAAUGUGAAAGCAAAUAUUUCUUCGUGUUGGAUGGGGACUGUGGGUAGAUAGGGGAACAAUGAGAGUCAACUCAGGCUA2000000006ACUUGGGUGUGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 52 107 270 293 344 806 1097 1218 1461 1489 1576
Modification Positions m6A Y Um m6A m6A m6A m6A m6A m6A Y m6A
Genomic Coordinates 7:97864489:- 7:97864434:- 7:97864271:- 7:97859388:- 7:97859337:- 7:97856709:- 7:97853323:- 7:97853113:- 7:97852279:- 7:97852251:- 7:97852164:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
jaSvBXBkn3xs
YkSG92k4EHDM
YkSG92k4EHDM
YkSG92k4EHDM
YkSG92k4EHDM
3kRDPWwiRCgi
L6w2k2VEv4EY
4HMi5ykupT9V
5aTkEfEpX8Xm
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
KTLz8piFYdwC
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8