General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000520360
Gene ID:	ENSG00000240990
Gene Name:	HOXA11-AS
Sequence (UNICHARACTER ENCODING)	CGCCGCUCUUUCUCCUCUGCUGCCGCCGCCGUCUCCCGGCAGCCGCCGCCGCCGCCGCUGUCCGAACUUGAAGUUGCCGGCGCGCCCGUUGCAGCCGCCGCCGCCGCCGCGGAGGUCGCCGUGGCCGCCGGGGGCCCCUUCUCGGCGCUCUUGUCCCCGGGGUAGUCGGAGGAGGCGAGGUUUUCCGGGGUGCCGUAGGCUGUCUCGAAAAЖCUGGUCGAAAGCCUGUGGCAGGACGCCGUUCCUGCCCACGGUGCUAUAGAAAUUGGЖCGAGЖCUGCGGGGGUGGGGUGGUGGUAGACGUUGGCCGAGCUCUUGGCCAGCACGUCGCCAGGCACGCCGGCCGCGCUGGGCGCCUGCAGGCAGUCUCUGUGCACGAGCUCCUCCGCGGAGUAGCAGUGGGCCAGAUUGCCGCGGGGGUGCCAUUUAGUGGCGGGCUCAAUGGCGUACUCUCUGAAGGUCACUUCGCGCACGGGUUGGЖCCUGGGGCAGGUUGGAGGAGUAGGAGUAUGUCAUUGGGCGCGAAGACGGGGUCUGGGGCAGAAAAGAAGGGAGGCUGGAGAAAUCUGGACCCGAGACGUAUGACUCGGCAGAGACAGAGGCACAGGGGCUGCCCUGCUGCUCACCGGUCCACCCAUCUGCCUGGUCUUCUGGAGCUGAGGЖCUCGGGAAACCAUGCAAUUGAGGCAAGCCUUGGGCUGCUUUAGAGGCGCUGACAUCCGAGGAGACUUCUCCUGGGAGGUCCAACAGCCGAGCUUAGCCCACCGGGCUCUGGGAAAGACCCGACUGAGGCUAAAGCCGCCCCGGAAGGCCAAGUCCGAGUUCCAUUUCUUGAAGAGGCCGGCGCGCGUAAGGCUGUGЖCAUUGGCCCUGGCGACUGGCUUCCCAGGAGCUGUUCUUUCUCAGGAGCUCCACAGCGCGGGCCAUCUCCAGAAAЖCUGUCUUCAGAGUGUAUUUCCUUUUAUCGUCAACCCAGAGCCCCACCGCGGCUAAUGCAAGAGGCCAAAAAAUGUUUGGAGGAAGAAAAACAAAGGCAGGAAGUGGCGGCGGCCUGACGGUGCGUGUGUGUCUGCAGAGAAGGGAGGGAGCCGGCUCAGUCUCUUCUUGUUUUUCCAAЖCUUCAAGGUCCAGGCAGCCCUCUGCAGGGCCGGGCCCCAUUGCUCCCCGCGCGGCAUUGGЖGGUGGCCGCCCGGAGAGGAGAAGGCCAACGCCUGCGCCAGGCUUGUCAGGCGGAAACGGCUAACAAGGAGAUUUGGUCAGCAAAЖCAGЖCCCAGCCUUUCCGAGGCUUCGUCUGACUUGGCCCGAAAGGUUGGGGAGGGGGGGCUUGCGCAGAGCCUCAGGGЖCCCUCCUCUCUGGGGЖCUACCAUCCCUGAGCCUUACGCUUCUUUCCACAGCCUUUGCAGGCGGAAUAUCGGAAUAAAGUGGGUCCAGGCGCCUCUGC
Sequence (SHORT NAMES ENCODING)	CGCCGCUCUUUCUCCUCUGCUGCCGCCGCCGUCUCCCGGCAGCCGCCGCCGCCGCCGCUGUCCGAACUUGAAGUUGCCGGCGCGCCCGUUGCAGCCGCCGCCGCCGCCGCGGAGGUCGCCGUGGCCGCCGGGGGCCCCUUCUCGGCGCUCUUGUCCCCGGGGUAGUCGGAGGAGGCGAGGUUUUCCGGGGUGCCGUAGGCUGUCUCGAAAAm6ACUGGUCGAAAGCCUGUGGCAGGACGCCGUUCCUGCCCACGGUGCUAUAGAAAUUGGm6ACGAGm6ACUGCGGGGGUGGGGUGGUGGUAGACGUUGGCCGAGCUCUUGGCCAGCACGUCGCCAGGCACGCCGGCCGCGCUGGGCGCCUGCAGGCAGUCUCUGUGCACGAGCUCCUCCGCGGAGUAGCAGUGGGCCAGAUUGCCGCGGGGGUGCCAUUUAGUGGCGGGCUCAAUGGCGUACUCUCUGAAGGUCACUUCGCGCACGGGUUGGm6ACCUGGGGCAGGUUGGAGGAGUAGGAGUAUGUCAUUGGGCGCGAAGACGGGGUCUGGGGCAGAAAAGAAGGGAGGCUGGAGAAAUCUGGACCCGAGACGUAUGACUCGGCAGAGACAGAGGCACAGGGGCUGCCCUGCUGCUCACCGGUCCACCCAUCUGCCUGGUCUUCUGGAGCUGAGGm6ACUCGGGAAACCAUGCAAUUGAGGCAAGCCUUGGGCUGCUUUAGAGGCGCUGACAUCCGAGGAGACUUCUCCUGGGAGGUCCAACAGCCGAGCUUAGCCCACCGGGCUCUGGGAAAGACCCGACUGAGGCUAAAGCCGCCCCGGAAGGCCAAGUCCGAGUUCCAUUUCUUGAAGAGGCCGGCGCGCGUAAGGCUGUGm6ACAUUGGCCCUGGCGACUGGCUUCCCAGGAGCUGUUCUUUCUCAGGAGCUCCACAGCGCGGGCCAUCUCCAGAAAm6ACUGUCUUCAGAGUGUAUUUCCUUUUAUCGUCAACCCAGAGCCCCACCGCGGCUAAUGCAAGAGGCCAAAAAAUGUUUGGAGGAAGAAAAACAAAGGCAGGAAGUGGCGGCGGCCUGACGGUGCGUGUGUGUCUGCAGAGAAGGGAGGGAGCCGGCUCAGUCUCUUCUUGUUUUUCCAAm6ACUUCAAGGUCCAGGCAGCCCUCUGCAGGGCCGGGCCCCAUUGCUCCCCGCGCGGCAUUGGm6AGGUGGCCGCCCGGAGAGGAGAAGGCCAACGCCUGCGCCAGGCUUGUCAGGCGGAAACGGCUAACAAGGAGAUUUGGUCAGCAAAm6ACAGm6ACCCAGCCUUUCCGAGGCUUCGUCUGACUUGGCCCGAAAGGUUGGGGAGGGGGGGCUUGCGCAGAGCCUCAGGGm6ACCCUCCUCUCUGGGGm6ACUACCAUCCCUGAGCCUUACGCUUCUUUCCACAGCCUUUGCAGGCGGAAUAUCGGAAUAAAGUGGGUCCAGGCGCCUCUGC
Sequence (MODOMICS CODE ENCODING)	CGCCGCUCUUUCUCCUCUGCUGCCGCCGCCGUCUCCCGGCAGCCGCCGCCGCCGCCGCUGUCCGAACUUGAAGUUGCCGGCGCGCCCGUUGCAGCCGCCGCCGCCGCCGCGGAGGUCGCCGUGGCCGCCGGGGGCCCCUUCUCGGCGCUCUUGUCCCCGGGGUAGUCGGAGGAGGCGAGGUUUUCCGGGGUGCCGUAGGCUGUCUCGAAAA2000000006ACUGGUCGAAAGCCUGUGGCAGGACGCCGUUCCUGCCCACGGUGCUAUAGAAAUUGG2000000006ACGAG2000000006ACUGCGGGGGUGGGGUGGUGGUAGACGUUGGCCGAGCUCUUGGCCAGCACGUCGCCAGGCACGCCGGCCGCGCUGGGCGCCUGCAGGCAGUCUCUGUGCACGAGCUCCUCCGCGGAGUAGCAGUGGGCCAGAUUGCCGCGGGGGUGCCAUUUAGUGGCGGGCUCAAUGGCGUACUCUCUGAAGGUCACUUCGCGCACGGGUUGG2000000006ACCUGGGGCAGGUUGGAGGAGUAGGAGUAUGUCAUUGGGCGCGAAGACGGGGUCUGGGGCAGAAAAGAAGGGAGGCUGGAGAAAUCUGGACCCGAGACGUAUGACUCGGCAGAGACAGAGGCACAGGGGCUGCCCUGCUGCUCACCGGUCCACCCAUCUGCCUGGUCUUCUGGAGCUGAGG2000000006ACUCGGGAAACCAUGCAAUUGAGGCAAGCCUUGGGCUGCUUUAGAGGCGCUGACAUCCGAGGAGACUUCUCCUGGGAGGUCCAACAGCCGAGCUUAGCCCACCGGGCUCUGGGAAAGACCCGACUGAGGCUAAAGCCGCCCCGGAAGGCCAAGUCCGAGUUCCAUUUCUUGAAGAGGCCGGCGCGCGUAAGGCUGUG2000000006ACAUUGGCCCUGGCGACUGGCUUCCCAGGAGCUGUUCUUUCUCAGGAGCUCCACAGCGCGGGCCAUCUCCAGAAA2000000006ACUGUCUUCAGAGUGUAUUUCCUUUUAUCGUCAACCCAGAGCCCCACCGCGGCUAAUGCAAGAGGCCAAAAAAUGUUUGGAGGAAGAAAAACAAAGGCAGGAAGUGGCGGCGGCCUGACGGUGCGUGUGUGUCUGCAGAGAAGGGAGGGAGCCGGCUCAGUCUCUUCUUGUUUUUCCAA2000000006ACUUCAAGGUCCAGGCAGCCCUCUGCAGGGCCGGGCCCCAUUGCUCCCCGCGCGGCAUUGG2000000006AGGUGGCCGCCCGGAGAGGAGAAGGCCAACGCCUGCGCCAGGCUUGUCAGGCGGAAACGGCUAACAAGGAGAUUUGGUCAGCAAA2000000006ACAG2000000006ACCCAGCCUUUCCGAGGCUUCGUCUGACUUGGCCCGAAAGGUUGGGGAGGGGGGGCUUGCGCAGAGCCUCAGGG2000000006ACCCUCCUCUCUGGGG2000000006ACUACCAUCCCUGAGCCUUACGCUUCUUUCCACAGCCUUUGCAGGCGGAAUAUCGGAAUAAAGUGGGUCCAGGCGCCUCUGC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	212	269	274	478	659	856	931	1110	1171	1256	1260	1334	1350
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	7:27184718:+	7:27184775:+	7:27184780:+	7:27184984:+	7:27186189:+	7:27188723:+	7:27188798:+	7:27188977:+	7:27189038:+	7:27189123:+	7:27189127:+	7:27189201:+	7:27189217:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5FhTyQVy2tKW 6UuHp6YApVKv gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn	6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	5Nnepx5V7yHo 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	WdHxkJGRmFxn BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8