General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000440652
Gene ID:	ENSG00000078967
Gene Name:	UBE2D4
Sequence (UNICHARACTER ENCODING)	CGGCAGCGGGGUAGGAUGGCGCUAAAGCGGAUCCAGAAGGAAUUAACCGACUUGCAGAGGGAUCCUCCUGCCCAGUGUUCUGCAGGACCUGUCGGUGAUGACUAAUGACAGUCCUUACCAAGGAGGUGUUUUCUUCCUGACCAPCCACUUUCCUACAGAUUACCCGUUCAAGCCCCCAAAGGUUGCUUUCACAACCAAAAUUUAUCACCCUAAUAUCAACAGCAAUGGCAGCAUCUGCCUUGAUAUCCUGCGGUCUCAGUGGUCUCCAGCGUUGACUGUGUCAAAAGUUCUCUUGUCCAUCUGCUCGCUGCUCUGCGACCCCAACCCCGAUGACCCCCUGGUGCCAGAGAUAGCACACACCUACAAGGCCGACAGAGAGAAGUACAACAGACUAGCAAGAGAGUGGACACAAAAAUAUGCUAUGUAAGUGCCUUGGAGGUUUUACAUGAGACACUGUCCAAGAGAAGCUGGCAGAGAGGUCUUCCCUUAAAЖCUUUGGGCUGUUGGCUGAGCCAUUCAAAGAGCAUCAUCUGUUCUUCAAACAAAUGUUGGUCACCCACUCUCUCCAGCUGCAGCAUGUUGGUGCCAUUUUCAGCAAUUACGGCUUUGACAGUGCCACCUCUUUGAUGCCAAAUCAGCAACCAUUGUUGUUAUGAUCUGCAGUCUUCCUGGUGACACUGGAAUCUCUCUCUCUGCCGCCUCAGUUUGUCUGCUGGUCUCUUGGGGGGCCAGGCCCUGCACGUCUCUCCUACCCGGCCUCAAAUGGUGCUGCUGCCCAUGAUGGUACCACACCAGGGCCUCAGCCUGGCCCCUCACCACAUACCCUUUGCCUUUUAGAЖCUCAGUGCCAUCCUGGGUGCCCAGGGCAGAGCAGGCUUUGUUCGCACCUCAUCUGCUGCAGAЖCCACAPCCUGAGGAGUCUCAGCUUAUCCUGGAGGGAAUUGGGAЖCAGUGUCACUGGGAAGUGAAGGCCUAGCCCUGUGGCUUCCACCAGUCUCCPCCUGCAGUGCCACGUGGUGGCAUUUCUCGCCUCACACCAAGAAGCAGCAAGUGGAAAAUUUCAGGAUACAAAGCACAUAЖCACCCCAUAAGAGAUGAUUAUGUUUUUAGAAGCAAGAGCAAAAUUAUGAAACCUCUAGAGAUUUGGGUCAUGUUACUCCAUUUGAUGAAGAUUCUCACUACCGCCCGCUCCPCCCAUAGGAGCCUACACUAAGUCCAAGUGUGAGCCAUUCACAGACUAGAACACAAGGAGGGAGAGAGЖCUCUUAAACGUAAAUAAAAAUGCAAUUCACUCACAACUCUAAA
Sequence (SHORT NAMES ENCODING)	CGGCAGCGGGGUAGGAUGGCGCUAAAGCGGAUCCAGAAGGAAUUAACCGACUUGCAGAGGGAUCCUCCUGCCCAGUGUUCUGCAGGACCUGUCGGUGAUGACUAAUGACAGUCCUUACCAAGGAGGUGUUUUCUUCCUGACCAYCCACUUUCCUACAGAUUACCCGUUCAAGCCCCCAAAGGUUGCUUUCACAACCAAAAUUUAUCACCCUAAUAUCAACAGCAAUGGCAGCAUCUGCCUUGAUAUCCUGCGGUCUCAGUGGUCUCCAGCGUUGACUGUGUCAAAAGUUCUCUUGUCCAUCUGCUCGCUGCUCUGCGACCCCAACCCCGAUGACCCCCUGGUGCCAGAGAUAGCACACACCUACAAGGCCGACAGAGAGAAGUACAACAGACUAGCAAGAGAGUGGACACAAAAAUAUGCUAUGUAAGUGCCUUGGAGGUUUUACAUGAGACACUGUCCAAGAGAAGCUGGCAGAGAGGUCUUCCCUUAAAm6ACUUUGGGCUGUUGGCUGAGCCAUUCAAAGAGCAUCAUCUGUUCUUCAAACAAAUGUUGGUCACCCACUCUCUCCAGCUGCAGCAUGUUGGUGCCAUUUUCAGCAAUUACGGCUUUGACAGUGCCACCUCUUUGAUGCCAAAUCAGCAACCAUUGUUGUUAUGAUCUGCAGUCUUCCUGGUGACACUGGAAUCUCUCUCUCUGCCGCCUCAGUUUGUCUGCUGGUCUCUUGGGGGGCCAGGCCCUGCACGUCUCUCCUACCCGGCCUCAAAUGGUGCUGCUGCCCAUGAUGGUACCACACCAGGGCCUCAGCCUGGCCCCUCACCACAUACCCUUUGCCUUUUAGAm6ACUCAGUGCCAUCCUGGGUGCCCAGGGCAGAGCAGGCUUUGUUCGCACCUCAUCUGCUGCAGAm6ACCACAYCCUGAGGAGUCUCAGCUUAUCCUGGAGGGAAUUGGGAm6ACAGUGUCACUGGGAAGUGAAGGCCUAGCCCUGUGGCUUCCACCAGUCUCCYCCUGCAGUGCCACGUGGUGGCAUUUCUCGCCUCACACCAAGAAGCAGCAAGUGGAAAAUUUCAGGAUACAAAGCACAUAm6ACACCCCAUAAGAGAUGAUUAUGUUUUUAGAAGCAAGAGCAAAAUUAUGAAACCUCUAGAGAUUUGGGUCAUGUUACUCCAUUUGAUGAAGAUUCUCACUACCGCCCGCUCCYCCCAUAGGAGCCUACACUAAGUCCAAGUGUGAGCCAUUCACAGACUAGAACACAAGGAGGGAGAGAGm6ACUCUUAAACGUAAAUAAAAAUGCAAUUCACUCACAACUCUAAA
Sequence (MODOMICS CODE ENCODING)	CGGCAGCGGGGUAGGAUGGCGCUAAAGCGGAUCCAGAAGGAAUUAACCGACUUGCAGAGGGAUCCUCCUGCCCAGUGUUCUGCAGGACCUGUCGGUGAUGACUAAUGACAGUCCUUACCAAGGAGGUGUUUUCUUCCUGACCA2000000009UCCACUUUCCUACAGAUUACCCGUUCAAGCCCCCAAAGGUUGCUUUCACAACCAAAAUUUAUCACCCUAAUAUCAACAGCAAUGGCAGCAUCUGCCUUGAUAUCCUGCGGUCUCAGUGGUCUCCAGCGUUGACUGUGUCAAAAGUUCUCUUGUCCAUCUGCUCGCUGCUCUGCGACCCCAACCCCGAUGACCCCCUGGUGCCAGAGAUAGCACACACCUACAAGGCCGACAGAGAGAAGUACAACAGACUAGCAAGAGAGUGGACACAAAAAUAUGCUAUGUAAGUGCCUUGGAGGUUUUACAUGAGACACUGUCCAAGAGAAGCUGGCAGAGAGGUCUUCCCUUAAA2000000006ACUUUGGGCUGUUGGCUGAGCCAUUCAAAGAGCAUCAUCUGUUCUUCAAACAAAUGUUGGUCACCCACUCUCUCCAGCUGCAGCAUGUUGGUGCCAUUUUCAGCAAUUACGGCUUUGACAGUGCCACCUCUUUGAUGCCAAAUCAGCAACCAUUGUUGUUAUGAUCUGCAGUCUUCCUGGUGACACUGGAAUCUCUCUCUCUGCCGCCUCAGUUUGUCUGCUGGUCUCUUGGGGGGCCAGGCCCUGCACGUCUCUCCUACCCGGCCUCAAAUGGUGCUGCUGCCCAUGAUGGUACCACACCAGGGCCUCAGCCUGGCCCCUCACCACAUACCCUUUGCCUUUUAGA2000000006ACUCAGUGCCAUCCUGGGUGCCCAGGGCAGAGCAGGCUUUGUUCGCACCUCAUCUGCUGCAGA2000000006ACCACA2000000009UCCUGAGGAGUCUCAGCUUAUCCUGGAGGGAAUUGGGA2000000006ACAGUGUCACUGGGAAGUGAAGGCCUAGCCCUGUGGCUUCCACCAGUCUCC2000000009UCCUGCAGUGCCACGUGGUGGCAUUUCUCGCCUCACACCAAGAAGCAGCAAGUGGAAAAUUUCAGGAUACAAAGCACAUA2000000006ACACCCCAUAAGAGAUGAUUAUGUUUUUAGAAGCAAGAGCAAAAUUAUGAAACCUCUAGAGAUUUGGGUCAUGUUACUCCAUUUGAUGAAGAUUCUCACUACCGCCCGCUCC2000000009UCCCAUAGGAGCCUACACUAAGUCCAAGUGUGAGCCAUUCACAGACUAGAACACAAGGAGGGAGAGAG2000000006ACUCUUAAACGUAAAUAAAAAUGCAAUUCACUCACAACUCUAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	144	492	838	901	907	945	996	1076	1188	1256
Modification Positions	Y	m6A	m6A	m6A	Y	m6A	Y	m6A	Y	m6A
Genomic Coordinates	7:43942994:+	7:43952760:+	7:43953106:+	7:43953169:+	7:43953175:+	7:43953213:+	7:43953264:+	7:43953344:+	7:43953456:+	7:43953524:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8