General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000289577
Gene ID:	ENSG00000158604
Gene Name:	TMED4
Sequence (UNICHARACTER ENCODING)	CUAACUCUCAGGGUCGCUAGGGUGGCGCGCAGGCGCAGAGCGAUGCGCAAAUGUGCGCAGGCGCUUAGGGGCUGAGGCGCGAUGGCAGGUGUCGGGGCUGGGCCUCUGCGGGCGAUGGGGCGGCAGGCCCUGCUGCUUCUCGCGCUGUGCGCCACAGGCGCCCAGGGGCUCUACUUCCACAUCGGCGAGACCGAGAAGCGCUGUUUCAUCGAGGAAAUCCCCGACGAGACCAUGGUCAUCGGCAACUAUCGUACCCAGAUGUGGGAUAAGCAGAAGGAGGUCUUCCUGCCCUCGACCCCUGGCCUGGGCAUGCACGUGGAAGUGAAGGACCCCGACGGCAAGGUGGUGCUGUCCCGGCAGUACGGCUCGGAGGGCCGCUUCACGUUCACCPCCCACACGCCCGGUGACCAUCAAAUCUGUCUGCACUCCAAUUCUACCAGGAUGGCUCUCUUCGCUGGUGGCAAACUGUAUCGUGAAGAGCGCUUCCGACUGACGAGCGAGAGCACCAACCAGAGGGUCCUAUGGUGGUCCAUUGCUCAGACUGUCAPCCUCAPCCUCACUGGCAUCUGGCAGAUGCGUCACCUCAAGAGCUUCUUUGAGGCCAAGAAGCUGGUGUAGUGCCCUCUUUGUAUGACCCUUCCUUUUUACCUCAUUUAUUUGGUACUUUCCCCACACAGUCCUPUAUCCACCUGGAUUUUUAGGGAAAAAAAUGAAAAAGAAUAAGUCACAUUGGUUCCAUGGCCACAAACCAUUCAGAUCAGCCACUUGCUGACCCUGGUUCUUAAGGACACAUGACAUUAGUCCAAUCUUUCAAAAUCUUGUCUUAGGGCUUGUGAGGAAUCAGAACUAACCCAGGACUCAGUCCUGCUUCUUUUGCCUCGAGUGAUUUUCCUCUGUUUUUCACUAAAUAAGCAAAUGAAAACUCUCUCCAUUACCUUCUGCUUUCUCUUUGUCCACUUACGCAGUAGGUGACUGGCAUGUGCCACAGAGCAGGCCCUGCCUCACUGUCUGCUGGUCAGUUCUGGGUUCACUUAAUGGCUUUGUGAAUGUAAAUAAGGGGCAGGUCUUGGCCCUAGAGGAUUGAGAUGUUUUUCUAAAUCUUAGAACUAUUUUUGGAUAAAUUAUAUAUUUUCCUUCCUAGUAGAAGUGUUACUGCCUGUAACUAGCUCAAAAUACCAAUGCAGUUUCUGCAUUCUGGGUUUUGUUUUUCCUUUUUUUUUUUUUUUUUUUUUUUUGAGUUUUGCUCUUGUCGCCCAGGCUGGAGUGCAAUGGCGUGAUCUCAGCUCACUGGCAACAUCUGCCUCCCGGGUUCAAAUGAUUCUCCUGCCUCAGUCUCCUGAGUAGCUGGGAUUACAGGUGCCCGCCACCACGCUCAGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUUACCAUGUUGGCCAGGCUGGUCUUAGACUCCUGACCUCAGUUGAUCCACCUGCCUCAGCCUCUGCAUUCAGUUUAUUCACAUAUUUUUGGUAЖCUCCCAUGGCAGCUCCUAGGAUUUCAGCGGUCUGUGGGCCAGAAAGCAGGCЖCCAGGGCUGACCUCAAGGCCGUAUCAGAGGGCCAAGCAGAGUUCUUUUGGAUACCUGCUUUUCAPCCCACAGGGCCUUAGAGUCAGAGGUAAGGUAGCAACAGAGCUAGAAUGGGGCAAUGCACUCUUACCCUCCUUCUCAACUUUUAUUUAAGCUGUGCUAAAUGUUUUCUUCAAGGGAACCAGAUUUAGUUCUPUACЖGAAUUUUCCAGUGAAAUAAAACAUGUUGUAAUAGCUGUGUUUGAGAUGAAAUAAGAGGUUGUGGGUAGAGGGGAGGCACCUAAAGGAAAAGAGGAAAGGUGCCUGGGCUACCUAUGCAGAUAACCUGGAGUGGACUUCACUGUGGЖCUCGUGGUACUAAGGCUUGGCCUGGACAGGCAGUCUAGGGGGUAUGGGAAUACACGGUGUGGUUGUUCAACUAUUUGCAAAGGUCAACCAAAUAGACCACAUGUUCGCAAAGUAUCAUCUGAGGAAAUUʍAGUACCUUCUUAGCCCUCUCAGUCAPAAAUUUGAACAAAUUUUAAUACACUUCCCUCAUGCCCUUCUAUAUAAAACUUAAUACCAUUAGUUCCCCAUUCUUGACAUUUUAUUUCAGUUUUUAUUAUAUAUUUAUUUGAAAUAUUUAUUAAAUUAUCUGACCUACAGAACUAAA
Sequence (SHORT NAMES ENCODING)	CUAACUCUCAGGGUCGCUAGGGUGGCGCGCAGGCGCAGAGCGAUGCGCAAAUGUGCGCAGGCGCUUAGGGGCUGAGGCGCGAUGGCAGGUGUCGGGGCUGGGCCUCUGCGGGCGAUGGGGCGGCAGGCCCUGCUGCUUCUCGCGCUGUGCGCCACAGGCGCCCAGGGGCUCUACUUCCACAUCGGCGAGACCGAGAAGCGCUGUUUCAUCGAGGAAAUCCCCGACGAGACCAUGGUCAUCGGCAACUAUCGUACCCAGAUGUGGGAUAAGCAGAAGGAGGUCUUCCUGCCCUCGACCCCUGGCCUGGGCAUGCACGUGGAAGUGAAGGACCCCGACGGCAAGGUGGUGCUGUCCCGGCAGUACGGCUCGGAGGGCCGCUUCACGUUCACCYCCCACACGCCCGGUGACCAUCAAAUCUGUCUGCACUCCAAUUCUACCAGGAUGGCUCUCUUCGCUGGUGGCAAACUGUAUCGUGAAGAGCGCUUCCGACUGACGAGCGAGAGCACCAACCAGAGGGUCCUAUGGUGGUCCAUUGCUCAGACUGUCAYCCUCAYCCUCACUGGCAUCUGGCAGAUGCGUCACCUCAAGAGCUUCUUUGAGGCCAAGAAGCUGGUGUAGUGCCCUCUUUGUAUGACCCUUCCUUUUUACCUCAUUUAUUUGGUACUUUCCCCACACAGUCCUYUAUCCACCUGGAUUUUUAGGGAAAAAAAUGAAAAAGAAUAAGUCACAUUGGUUCCAUGGCCACAAACCAUUCAGAUCAGCCACUUGCUGACCCUGGUUCUUAAGGACACAUGACAUUAGUCCAAUCUUUCAAAAUCUUGUCUUAGGGCUUGUGAGGAAUCAGAACUAACCCAGGACUCAGUCCUGCUUCUUUUGCCUCGAGUGAUUUUCCUCUGUUUUUCACUAAAUAAGCAAAUGAAAACUCUCUCCAUUACCUUCUGCUUUCUCUUUGUCCACUUACGCAGUAGGUGACUGGCAUGUGCCACAGAGCAGGCCCUGCCUCACUGUCUGCUGGUCAGUUCUGGGUUCACUUAAUGGCUUUGUGAAUGUAAAUAAGGGGCAGGUCUUGGCCCUAGAGGAUUGAGAUGUUUUUCUAAAUCUUAGAACUAUUUUUGGAUAAAUUAUAUAUUUUCCUUCCUAGUAGAAGUGUUACUGCCUGUAACUAGCUCAAAAUACCAAUGCAGUUUCUGCAUUCUGGGUUUUGUUUUUCCUUUUUUUUUUUUUUUUUUUUUUUUGAGUUUUGCUCUUGUCGCCCAGGCUGGAGUGCAAUGGCGUGAUCUCAGCUCACUGGCAACAUCUGCCUCCCGGGUUCAAAUGAUUCUCCUGCCUCAGUCUCCUGAGUAGCUGGGAUUACAGGUGCCCGCCACCACGCUCAGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUUACCAUGUUGGCCAGGCUGGUCUUAGACUCCUGACCUCAGUUGAUCCACCUGCCUCAGCCUCUGCAUUCAGUUUAUUCACAUAUUUUUGGUAm6ACUCCCAUGGCAGCUCCUAGGAUUUCAGCGGUCUGUGGGCCAGAAAGCAGGCm6ACCAGGGCUGACCUCAAGGCCGUAUCAGAGGGCCAAGCAGAGUUCUUUUGGAUACCUGCUUUUCAYCCCACAGGGCCUUAGAGUCAGAGGUAAGGUAGCAACAGAGCUAGAAUGGGGCAAUGCACUCUUACCCUCCUUCUCAACUUUUAUUUAAGCUGUGCUAAAUGUUUUCUUCAAGGGAACCAGAUUUAGUUCUYUACm6AGAAUUUUCCAGUGAAAUAAAACAUGUUGUAAUAGCUGUGUUUGAGAUGAAAUAAGAGGUUGUGGGUAGAGGGGAGGCACCUAAAGGAAAAGAGGAAAGGUGCCUGGGCUACCUAUGCAGAUAACCUGGAGUGGACUUCACUGUGGm6ACUCGUGGUACUAAGGCUUGGCCUGGACAGGCAGUCUAGGGGGUAUGGGAAUACACGGUGUGGUUGUUCAACUAUUUGCAAAGGUCAACCAAAUAGACCACAUGUUCGCAAAGUAUCAUCUGAGGAAAUUAmAGUACCUUCUUAGCCCUCUCAGUCAYAAAUUUGAACAAAUUUUAAUACACUUCCCUCAUGCCCUUCUAUAUAAAACUUAAUACCAUUAGUUCCCCAUUCUUGACAUUUUAUUUCAGUUUUUAUUAUAUAUUUAUUUGAAAUAUUUAUUAAAUUAUCUGACCUACAGAACUAAA
Sequence (MODOMICS CODE ENCODING)	CUAACUCUCAGGGUCGCUAGGGUGGCGCGCAGGCGCAGAGCGAUGCGCAAAUGUGCGCAGGCGCUUAGGGGCUGAGGCGCGAUGGCAGGUGUCGGGGCUGGGCCUCUGCGGGCGAUGGGGCGGCAGGCCCUGCUGCUUCUCGCGCUGUGCGCCACAGGCGCCCAGGGGCUCUACUUCCACAUCGGCGAGACCGAGAAGCGCUGUUUCAUCGAGGAAAUCCCCGACGAGACCAUGGUCAUCGGCAACUAUCGUACCCAGAUGUGGGAUAAGCAGAAGGAGGUCUUCCUGCCCUCGACCCCUGGCCUGGGCAUGCACGUGGAAGUGAAGGACCCCGACGGCAAGGUGGUGCUGUCCCGGCAGUACGGCUCGGAGGGCCGCUUCACGUUCACC2000000009UCCCACACGCCCGGUGACCAUCAAAUCUGUCUGCACUCCAAUUCUACCAGGAUGGCUCUCUUCGCUGGUGGCAAACUGUAUCGUGAAGAGCGCUUCCGACUGACGAGCGAGAGCACCAACCAGAGGGUCCUAUGGUGGUCCAUUGCUCAGACUGUCA2000000009UCCUCA2000000009UCCUCACUGGCAUCUGGCAGAUGCGUCACCUCAAGAGCUUCUUUGAGGCCAAGAAGCUGGUGUAGUGCCCUCUUUGUAUGACCCUUCCUUUUUACCUCAUUUAUUUGGUACUUUCCCCACACAGUCCU2000000009UUAUCCACCUGGAUUUUUAGGGAAAAAAAUGAAAAAGAAUAAGUCACAUUGGUUCCAUGGCCACAAACCAUUCAGAUCAGCCACUUGCUGACCCUGGUUCUUAAGGACACAUGACAUUAGUCCAAUCUUUCAAAAUCUUGUCUUAGGGCUUGUGAGGAAUCAGAACUAACCCAGGACUCAGUCCUGCUUCUUUUGCCUCGAGUGAUUUUCCUCUGUUUUUCACUAAAUAAGCAAAUGAAAACUCUCUCCAUUACCUUCUGCUUUCUCUUUGUCCACUUACGCAGUAGGUGACUGGCAUGUGCCACAGAGCAGGCCCUGCCUCACUGUCUGCUGGUCAGUUCUGGGUUCACUUAAUGGCUUUGUGAAUGUAAAUAAGGGGCAGGUCUUGGCCCUAGAGGAUUGAGAUGUUUUUCUAAAUCUUAGAACUAUUUUUGGAUAAAUUAUAUAUUUUCCUUCCUAGUAGAAGUGUUACUGCCUGUAACUAGCUCAAAAUACCAAUGCAGUUUCUGCAUUCUGGGUUUUGUUUUUCCUUUUUUUUUUUUUUUUUUUUUUUUGAGUUUUGCUCUUGUCGCCCAGGCUGGAGUGCAAUGGCGUGAUCUCAGCUCACUGGCAACAUCUGCCUCCCGGGUUCAAAUGAUUCUCCUGCCUCAGUCUCCUGAGUAGCUGGGAUUACAGGUGCCCGCCACCACGCUCAGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUUACCAUGUUGGCCAGGCUGGUCUUAGACUCCUGACCUCAGUUGAUCCACCUGCCUCAGCCUCUGCAUUCAGUUUAUUCACAUAUUUUUGGUA2000000006ACUCCCAUGGCAGCUCCUAGGAUUUCAGCGGUCUGUGGGCCAGAAAGCAGGC2000000006ACCAGGGCUGACCUCAAGGCCGUAUCAGAGGGCCAAGCAGAGUUCUUUUGGAUACCUGCUUUUCA2000000009UCCCACAGGGCCUUAGAGUCAGAGGUAAGGUAGCAACAGAGCUAGAAUGGGGCAAUGCACUCUUACCCUCCUUCUCAACUUUUAUUUAAGCUGUGCUAAAUGUUUUCUUCAAGGGAACCAGAUUUAGUUCU2000000009UUAC2000000006AGAAUUUUCCAGUGAAAUAAAACAUGUUGUAAUAGCUGUGUUUGAGAUGAAAUAAGAGGUUGUGGGUAGAGGGGAGGCACCUAAAGGAAAAGAGGAAAGGUGCCUGGGCUACCUAUGCAGAUAACCUGGAGUGGACUUCACUGUGG2000000006ACUCGUGGUACUAAGGCUUGGCCUGGACAGGCAGUCUAGGGGGUAUGGGAAUACACGGUGUGGUUGUUCAACUAUUUGCAAAGGUCAACCAAAUAGACCACAUGUUCGCAAAGUAUCAUCUGAGGAAAUU2000000090AAGUACCUUCUUAGCCCUCUCAGUCA2000000009UAAAUUUGAACAAAUUUUAAUACACUUCCCUCAUGCCCUUCUAUAUAAAACUUAAUACCAUUAGUUCCCCAUUCUUGACAUUUUAUUUCAGUUUUUAUUAUAUAUUUAUUUGAAAUAUUUAUUAAAUUAUCUGACCUACAGAACUAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	391	548	554	682	1502	1554	1619	1750	1754	1900	2030	2056
Modification Positions	Y	Y	Y	Y	m6A	m6A	Y	Y	m6A	m6A	Am	Y
Genomic Coordinates	7:44581526:-	7:44579549:-	7:44579543:-	7:44579415:-	7:44578595:-	7:44578543:-	7:44578478:-	7:44578347:-	7:44578343:-	7:44578197:-	7:44578067:-	7:44578041:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8