Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000486685
Gene ID: ENSG00000158457
Gene Name: TSPAN33
Sequence (UNICHARACTER ENCODING) CUGGGCGCCUGGCUGGCCGGGCUGGUCCUGCGGCCGCGGGUGAGUCUCGUCCGCUCGCGCUGCCCACCGCGGCUCCAGCAGCUCCAGGCGCGGUUCCCCGGCCCGCGCCGCUCCCGGCCCCCCGGCUCGGGCGCCUCCCGCCGCAGCGCAGGCUCCCCCGCCGGCCGGGCUCCUGCGCGGCGCGGCUCGGCUCAUGCCCCCGGGCGCGGGGCACACAGGCCGGCCGGCAGCCGCUGGGAAAUAGGCCCCCGGGGGCGGUGGCGGCGGCGGGGCCAUGGCGCGGAGACCCCGGGCGCCGGCCGCCUCCGGGGAGGAGUUCUCCUUCGUCAGCCCGCUGGUGAAAUACCUGCUCUUCUUCUUCAACAUGCUCUUCUGGGUGAUUUCCAUGGUGAUGGUGGCUGUGGGUGUCUACGCUCGGCUAAUGAAGCAUGCAGAAGCAGCCCUAGCCUGCCUGGCAGUGGACCCUGCCAUCCUGCUGAUCGUGGUGGGUGUCCUCAUGUUCCUGCUCACCUUCUGUGGCUGCAUUGGGUCCCUCCGCGAGAACAUCUGCCUCCUGCAGACGUUCUCCCUCUGCCUCACCGCUGUGUUCCUGCUGCAGCUGGCCGCUGGGAUCCUGGGCUUCGUCUUCUCAGACAAGGCUCGAGGGAAAGUGAGUGAGAUCAUCAACAAUGCCAUUGUGCACUACCGAGAUGACUUGGAUCUGCAGAACCUCAUUGAUUUUGGCCAGAAAAAGUUUAGCUGCUGUGGAGGGAUUUCCUACAAGGACUGGUCUCAGAACAUGUAUUUCAACUGCUCAGAAGACAACCCCAGUCGAGAGCGCUGCUCUGUGCCUUACUCCUGUUGCUUGCCUACUCCUGACCAGGCAGUGAUCAACACUAUGUGUGGCCAAGGUAUGCAGGCCUUUGACUACUUGGAAGCUAGCAAAGUCAUCUACACCAAUGGCUGUAUUGACAAGUUGGUCAACUGGAUACACAGCAACCUAUUCUUACUUGGUGGUGUGGCUCUAGGCCUGGCCAUCCCCCAGCUGGUGGGAAUUCUGCUGUCCCAGAUCCUAGUGAAUCAGAUCAAAGAUCAGAUCAAGCUACAGCUCUACAACCAGCAGCACCGGGCUGACCCAUGGUACUGAGAAUCCAUCCUGCACCUCCUCACCAUGGAAACUGGCAAGCCUCAUAAACGAЖCAGCAGUGGGUGCUGAAAGCAGCACCAAAUGGAGAUUUGGAUUCCAGCCCCCCAGUGACAGCCCAGUGGGAAGAAGCAAACUCCAGAUGGGCAGAAGGCAGGGUGCACAGGUGGCUCCAGUCUCAGGAGGAUGCGCCUCCUCUCCCCCAPCCCAGCCCUCAGCAUUGUGCCAGAGUGAUACCCUUAAGUGUUUGGGUUUAUGUUUUCAGUUUUGUUUGGGAAACAGCAGUUGCACAGAGAGUUGGGGGUACUGCUGCUGCCUUUUCACCGAGGCACUGCCACCACCAGCUCUAGCAGGGAUGCUCCUGAGCUUGGCGGACAUACUUAGAUCCUAACGUGCCAGUGAGЖCCUGGCUGUGGAGAGUAGCACUGGCAGCCCUGCCUGGACUCCACUUGGCAUGAUACCAGCUCCAGAAGGGAAGGGAGUGGAGCAGGCAGUGAGGAGAGAGCCUGGGGGUCGGCUGGGGACAGCCGUAUGUGCUAGGUAGGAGUGGAGGGAGAUAUGUUUACCAAAUGCCUGUCCUGCCAPCCUCCCAGGUAGUCAGAGUGAGCUACAPCCUGCCCCGCCUUCAUUUCCAUGGAAACAUGGCAGCUAGGACACGGGGUACAACAGCAGCCAAAUUCUUCCCCACCUCCCUUACUUCGAAAAAAAGUUUGGAACCCUGGUCCCUAUACUCUGCAGUCAGAAGUGGGACUGAGCCAUACAUGCCCUUGAAUUCCUCCCUGUCUGGCCCUCCCUCUCCAGCAAGCAGGGUUUUCUPUAACUUGGCAGUGUGCAGAGGAGAAGUGGUAЖCACCCCCACCCCAUUCCCCUGCAUCGGAGCUCAGUAUUCCUACAGGGUAAGAGGUAGGAAUCUUGCUGGGACGAGGGGAGCCAGAAGUGGCAAUAAAAGCGUGUUGACCUGGGCUACGCGGGACUCCAUGAAUUUUCCAUUCUGGCAACUGGAAGGGGAGGUGUAGAAGGGCCCUGCAGAGGACGGCACUGGAGЖCUCUCCUAAACGCCACACACCUCCCCCUUGCUGCCCGCCACACGCGCGUCUCCUUCAACCGAUGCAUUGCCACCCUCCCACAGCCUCGCCCUCUGCUCUAAAUUAGGUCGAAAGAGUCCCAGUUCCAAUCUAGGAACAGCAUAAUUUUGUUCCAAAACCUGAUCUGUGUUUUUCUAAUUAAAAUUAAUUUGUCACCCAAAACAGGAGGGGGAUGGGGAGGAGGGACAUGAGCACUCCGCUGGGGCCGGGACGGGGAAUGAGGAGGAAGAAGGCCCUCUCUUCCCCUACCCGGGCCCUCCAGGACCUUCUCCCUGAGUCGGCUGUAGGGAGGACUCCGAGGAAGCUCGGCGCGGUGCGCUGGGCCUCCUGGCGCCGGGAGGAGCGCGCGAGGCAGGCGGGGCGGGCGCGUCCGGGGCGGGGCGCUGGACUUCGUGGGUGGUCCCCGCCCCCGCGGCGGCCUAGGCCCGCGCCUGCGUCCCCCAACCCGGAGGAGAUGGGGGGCUGUGCUAGCUGCUUGCCCAGCGAGUGUUCCCGGAGUCUCCUCGCCGCACCCCGCUAUCGGGCGCUCAGACCAGGGGCUCGGCCUGGCGGGAAAUAGCCUCGACCGAACUGCUGCGGGGACAAAGAGCCGCGAGUUCGCUCCCUGCCCCCAGUGUCUCCUAAGCGAGCCUUCUGCUCCUAGGAAGGCGCCUUUCCAGCAGCCGCUGGGACCCUGGCCAGUGUUUAGCUCCCAACUAGUAACAGACGGAAAGAAAAAAUAAAAUUAUCCAGAAUCUAGAAUAAAAA
Sequence (SHORT NAMES ENCODING) CUGGGCGCCUGGCUGGCCGGGCUGGUCCUGCGGCCGCGGGUGAGUCUCGUCCGCUCGCGCUGCCCACCGCGGCUCCAGCAGCUCCAGGCGCGGUUCCCCGGCCCGCGCCGCUCCCGGCCCCCCGGCUCGGGCGCCUCCCGCCGCAGCGCAGGCUCCCCCGCCGGCCGGGCUCCUGCGCGGCGCGGCUCGGCUCAUGCCCCCGGGCGCGGGGCACACAGGCCGGCCGGCAGCCGCUGGGAAAUAGGCCCCCGGGGGCGGUGGCGGCGGCGGGGCCAUGGCGCGGAGACCCCGGGCGCCGGCCGCCUCCGGGGAGGAGUUCUCCUUCGUCAGCCCGCUGGUGAAAUACCUGCUCUUCUUCUUCAACAUGCUCUUCUGGGUGAUUUCCAUGGUGAUGGUGGCUGUGGGUGUCUACGCUCGGCUAAUGAAGCAUGCAGAAGCAGCCCUAGCCUGCCUGGCAGUGGACCCUGCCAUCCUGCUGAUCGUGGUGGGUGUCCUCAUGUUCCUGCUCACCUUCUGUGGCUGCAUUGGGUCCCUCCGCGAGAACAUCUGCCUCCUGCAGACGUUCUCCCUCUGCCUCACCGCUGUGUUCCUGCUGCAGCUGGCCGCUGGGAUCCUGGGCUUCGUCUUCUCAGACAAGGCUCGAGGGAAAGUGAGUGAGAUCAUCAACAAUGCCAUUGUGCACUACCGAGAUGACUUGGAUCUGCAGAACCUCAUUGAUUUUGGCCAGAAAAAGUUUAGCUGCUGUGGAGGGAUUUCCUACAAGGACUGGUCUCAGAACAUGUAUUUCAACUGCUCAGAAGACAACCCCAGUCGAGAGCGCUGCUCUGUGCCUUACUCCUGUUGCUUGCCUACUCCUGACCAGGCAGUGAUCAACACUAUGUGUGGCCAAGGUAUGCAGGCCUUUGACUACUUGGAAGCUAGCAAAGUCAUCUACACCAAUGGCUGUAUUGACAAGUUGGUCAACUGGAUACACAGCAACCUAUUCUUACUUGGUGGUGUGGCUCUAGGCCUGGCCAUCCCCCAGCUGGUGGGAAUUCUGCUGUCCCAGAUCCUAGUGAAUCAGAUCAAAGAUCAGAUCAAGCUACAGCUCUACAACCAGCAGCACCGGGCUGACCCAUGGUACUGAGAAUCCAUCCUGCACCUCCUCACCAUGGAAACUGGCAAGCCUCAUAAACGAm6ACAGCAGUGGGUGCUGAAAGCAGCACCAAAUGGAGAUUUGGAUUCCAGCCCCCCAGUGACAGCCCAGUGGGAAGAAGCAAACUCCAGAUGGGCAGAAGGCAGGGUGCACAGGUGGCUCCAGUCUCAGGAGGAUGCGCCUCCUCUCCCCCAYCCCAGCCCUCAGCAUUGUGCCAGAGUGAUACCCUUAAGUGUUUGGGUUUAUGUUUUCAGUUUUGUUUGGGAAACAGCAGUUGCACAGAGAGUUGGGGGUACUGCUGCUGCCUUUUCACCGAGGCACUGCCACCACCAGCUCUAGCAGGGAUGCUCCUGAGCUUGGCGGACAUACUUAGAUCCUAACGUGCCAGUGAGm6ACCUGGCUGUGGAGAGUAGCACUGGCAGCCCUGCCUGGACUCCACUUGGCAUGAUACCAGCUCCAGAAGGGAAGGGAGUGGAGCAGGCAGUGAGGAGAGAGCCUGGGGGUCGGCUGGGGACAGCCGUAUGUGCUAGGUAGGAGUGGAGGGAGAUAUGUUUACCAAAUGCCUGUCCUGCCAYCCUCCCAGGUAGUCAGAGUGAGCUACAYCCUGCCCCGCCUUCAUUUCCAUGGAAACAUGGCAGCUAGGACACGGGGUACAACAGCAGCCAAAUUCUUCCCCACCUCCCUUACUUCGAAAAAAAGUUUGGAACCCUGGUCCCUAUACUCUGCAGUCAGAAGUGGGACUGAGCCAUACAUGCCCUUGAAUUCCUCCCUGUCUGGCCCUCCCUCUCCAGCAAGCAGGGUUUUCUYUAACUUGGCAGUGUGCAGAGGAGAAGUGGUAm6ACACCCCCACCCCAUUCCCCUGCAUCGGAGCUCAGUAUUCCUACAGGGUAAGAGGUAGGAAUCUUGCUGGGACGAGGGGAGCCAGAAGUGGCAAUAAAAGCGUGUUGACCUGGGCUACGCGGGACUCCAUGAAUUUUCCAUUCUGGCAACUGGAAGGGGAGGUGUAGAAGGGCCCUGCAGAGGACGGCACUGGAGm6ACUCUCCUAAACGCCACACACCUCCCCCUUGCUGCCCGCCACACGCGCGUCUCCUUCAACCGAUGCAUUGCCACCCUCCCACAGCCUCGCCCUCUGCUCUAAAUUAGGUCGAAAGAGUCCCAGUUCCAAUCUAGGAACAGCAUAAUUUUGUUCCAAAACCUGAUCUGUGUUUUUCUAAUUAAAAUUAAUUUGUCACCCAAAACAGGAGGGGGAUGGGGAGGAGGGACAUGAGCACUCCGCUGGGGCCGGGACGGGGAAUGAGGAGGAAGAAGGCCCUCUCUUCCCCUACCCGGGCCCUCCAGGACCUUCUCCCUGAGUCGGCUGUAGGGAGGACUCCGAGGAAGCUCGGCGCGGUGCGCUGGGCCUCCUGGCGCCGGGAGGAGCGCGCGAGGCAGGCGGGGCGGGCGCGUCCGGGGCGGGGCGCUGGACUUCGUGGGUGGUCCCCGCCCCCGCGGCGGCCUAGGCCCGCGCCUGCGUCCCCCAACCCGGAGGAGAUGGGGGGCUGUGCUAGCUGCUUGCCCAGCGAGUGUUCCCGGAGUCUCCUCGCCGCACCCCGCUAUCGGGCGCUCAGACCAGGGGCUCGGCCUGGCGGGAAAUAGCCUCGACCGAACUGCUGCGGGGACAAAGAGCCGCGAGUUCGCUCCCUGCCCCCAGUGUCUCCUAAGCGAGCCUUCUGCUCCUAGGAAGGCGCCUUUCCAGCAGCCGCUGGGACCCUGGCCAGUGUUUAGCUCCCAACUAGUAACAGACGGAAAGAAAAAAUAAAAUUAUCCAGAAUCUAGAAUAAAAA
Sequence (MODOMICS CODE ENCODING) CUGGGCGCCUGGCUGGCCGGGCUGGUCCUGCGGCCGCGGGUGAGUCUCGUCCGCUCGCGCUGCCCACCGCGGCUCCAGCAGCUCCAGGCGCGGUUCCCCGGCCCGCGCCGCUCCCGGCCCCCCGGCUCGGGCGCCUCCCGCCGCAGCGCAGGCUCCCCCGCCGGCCGGGCUCCUGCGCGGCGCGGCUCGGCUCAUGCCCCCGGGCGCGGGGCACACAGGCCGGCCGGCAGCCGCUGGGAAAUAGGCCCCCGGGGGCGGUGGCGGCGGCGGGGCCAUGGCGCGGAGACCCCGGGCGCCGGCCGCCUCCGGGGAGGAGUUCUCCUUCGUCAGCCCGCUGGUGAAAUACCUGCUCUUCUUCUUCAACAUGCUCUUCUGGGUGAUUUCCAUGGUGAUGGUGGCUGUGGGUGUCUACGCUCGGCUAAUGAAGCAUGCAGAAGCAGCCCUAGCCUGCCUGGCAGUGGACCCUGCCAUCCUGCUGAUCGUGGUGGGUGUCCUCAUGUUCCUGCUCACCUUCUGUGGCUGCAUUGGGUCCCUCCGCGAGAACAUCUGCCUCCUGCAGACGUUCUCCCUCUGCCUCACCGCUGUGUUCCUGCUGCAGCUGGCCGCUGGGAUCCUGGGCUUCGUCUUCUCAGACAAGGCUCGAGGGAAAGUGAGUGAGAUCAUCAACAAUGCCAUUGUGCACUACCGAGAUGACUUGGAUCUGCAGAACCUCAUUGAUUUUGGCCAGAAAAAGUUUAGCUGCUGUGGAGGGAUUUCCUACAAGGACUGGUCUCAGAACAUGUAUUUCAACUGCUCAGAAGACAACCCCAGUCGAGAGCGCUGCUCUGUGCCUUACUCCUGUUGCUUGCCUACUCCUGACCAGGCAGUGAUCAACACUAUGUGUGGCCAAGGUAUGCAGGCCUUUGACUACUUGGAAGCUAGCAAAGUCAUCUACACCAAUGGCUGUAUUGACAAGUUGGUCAACUGGAUACACAGCAACCUAUUCUUACUUGGUGGUGUGGCUCUAGGCCUGGCCAUCCCCCAGCUGGUGGGAAUUCUGCUGUCCCAGAUCCUAGUGAAUCAGAUCAAAGAUCAGAUCAAGCUACAGCUCUACAACCAGCAGCACCGGGCUGACCCAUGGUACUGAGAAUCCAUCCUGCACCUCCUCACCAUGGAAACUGGCAAGCCUCAUAAACGA2000000006ACAGCAGUGGGUGCUGAAAGCAGCACCAAAUGGAGAUUUGGAUUCCAGCCCCCCAGUGACAGCCCAGUGGGAAGAAGCAAACUCCAGAUGGGCAGAAGGCAGGGUGCACAGGUGGCUCCAGUCUCAGGAGGAUGCGCCUCCUCUCCCCCA2000000009UCCCAGCCCUCAGCAUUGUGCCAGAGUGAUACCCUUAAGUGUUUGGGUUUAUGUUUUCAGUUUUGUUUGGGAAACAGCAGUUGCACAGAGAGUUGGGGGUACUGCUGCUGCCUUUUCACCGAGGCACUGCCACCACCAGCUCUAGCAGGGAUGCUCCUGAGCUUGGCGGACAUACUUAGAUCCUAACGUGCCAGUGAG2000000006ACCUGGCUGUGGAGAGUAGCACUGGCAGCCCUGCCUGGACUCCACUUGGCAUGAUACCAGCUCCAGAAGGGAAGGGAGUGGAGCAGGCAGUGAGGAGAGAGCCUGGGGGUCGGCUGGGGACAGCCGUAUGUGCUAGGUAGGAGUGGAGGGAGAUAUGUUUACCAAAUGCCUGUCCUGCCA2000000009UCCUCCCAGGUAGUCAGAGUGAGCUACA2000000009UCCUGCCCCGCCUUCAUUUCCAUGGAAACAUGGCAGCUAGGACACGGGGUACAACAGCAGCCAAAUUCUUCCCCACCUCCCUUACUUCGAAAAAAAGUUUGGAACCCUGGUCCCUAUACUCUGCAGUCAGAAGUGGGACUGAGCCAUACAUGCCCUUGAAUUCCUCCCUGUCUGGCCCUCCCUCUCCAGCAAGCAGGGUUUUCU2000000009UUAACUUGGCAGUGUGCAGAGGAGAAGUGGUA2000000006ACACCCCCACCCCAUUCCCCUGCAUCGGAGCUCAGUAUUCCUACAGGGUAAGAGGUAGGAAUCUUGCUGGGACGAGGGGAGCCAGAAGUGGCAAUAAAAGCGUGUUGACCUGGGCUACGCGGGACUCCAUGAAUUUUCCAUUCUGGCAACUGGAAGGGGAGGUGUAGAAGGGCCCUGCAGAGGACGGCACUGGAG2000000006ACUCUCCUAAACGCCACACACCUCCCCCUUGCUGCCCGCCACACGCGCGUCUCCUUCAACCGAUGCAUUGCCACCCUCCCACAGCCUCGCCCUCUGCUCUAAAUUAGGUCGAAAGAGUCCCAGUUCCAAUCUAGGAACAGCAUAAUUUUGUUCCAAAACCUGAUCUGUGUUUUUCUAAUUAAAAUUAAUUUGUCACCCAAAACAGGAGGGGGAUGGGGAGGAGGGACAUGAGCACUCCGCUGGGGCCGGGACGGGGAAUGAGGAGGAAGAAGGCCCUCUCUUCCCCUACCCGGGCCCUCCAGGACCUUCUCCCUGAGUCGGCUGUAGGGAGGACUCCGAGGAAGCUCGGCGCGGUGCGCUGGGCCUCCUGGCGCCGGGAGGAGCGCGCGAGGCAGGCGGGGCGGGCGCGUCCGGGGCGGGGCGCUGGACUUCGUGGGUGGUCCCCGCCCCCGCGGCGGCCUAGGCCCGCGCCUGCGUCCCCCAACCCGGAGGAGAUGGGGGGCUGUGCUAGCUGCUUGCCCAGCGAGUGUUCCCGGAGUCUCCUCGCCGCACCCCGCUAUCGGGCGCUCAGACCAGGGGCUCGGCCUGGCGGGAAAUAGCCUCGACCGAACUGCUGCGGGGACAAAGAGCCGCGAGUUCGCUCCCUGCCCCCAGUGUCUCCUAAGCGAGCCUUCUGCUCCUAGGAAGGCGCCUUUCCAGCAGCCGCUGGGACCCUGGCCAGUGUUUAGCUCCCAACUAGUAACAGACGGAAAGAAAAAAUAAAAUUAUCCAGAAUCUAGAAUAAAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1178 1328 1526 1706 1734 1938 1970 2165
Modification Positions m6A Y m6A Y Y Y m6A m6A
Genomic Coordinates 7:129167926:+ 7:129168076:+ 7:129168274:+ 7:129168454:+ 7:129168482:+ 7:129168686:+ 7:129168718:+ 7:129168913:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
aHkqKEJkRYyb
Ap2q43bQLNek
msuJfBpJvM5H
nGifePrmgHfe
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
8cMbzB4aD5Se
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
JkWoGWVwjNda
Yfn77uLS5tv8
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL