Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000222693
Gene ID: ENSG00000105971
Gene Name: CAV2
Sequence (UNICHARACTER ENCODING) GCACCGCGCCAGCCGGGCUGCAGCGGCCGCGCACCAAGGCUGCGAUGGGGCUGGAGACGGAGAAGGCGGACGUACЖGCUCUUCAUGGACGACGACUCCUACAGCCACCACAGCGGCCUCGAGUACGCCGACCCCGAGAAGUUCGCGGACUCGGACCAGGACCGGGAUCCCCACCGGCUCAACUCGCAUCUCAAGCUGGGCUUCGAGGAUGUGAUCGCAGAGCCGGUGACUACGCACUCCUUUGACAAAGUGUGGAUCUGCAGCCAUGCCCUCUUUGAAAUCAGCAAAUACGUAAUGUACAAGUUCCUGACGGUGUUCCUGGCCAUUCCCCUGGCCUUCAUUGCGGGAAUUCUCUUUGCCACCCUCAGCUGUCUGCACAUCUGGAUUUUAAUGCCUUUUGUAAAGACCUGCCUAAUGGUUCUGCCUUCAGUGCAGACAAUAUGGAAGAGUGUGACAGAUGUUAUCAUUGCUCCAUUGUGUACGAGCGUAGGACGAUGCUUCUCUUCUGUCAGCCUGCAACUGAGCCAGGAUUGAAUACUUGGACCCCAGGUCUGGAGAUUGGGAUACUGUAAUACUUCUUUGUUAUUAUAACAUAAAAGCACCACUGUUCUGUUCAUUUCCUAGCUGUUCUAAUUAAGAAAACUAUUAAGAUGAGCAACCACAUUUAGAAAUGUUUAUUGACAGGUCUUUUCAAAUAAUGCUUUUCUAAUUAAUAGCCAAAGAUUUCAUAUCUAЖCUUUGUAACCAGAAUUAUACAGUAAGUUGACACCACUUAGAUUUAAAGGCAGACAGUUUUGCUPUAGUACAAUAGUAUACAUUUUAUAAUGAUGAACUUAUAAUGAUUAAGGGACAUUUCUAUAAAAAUACUACAAUAGUUUUAUGCACAACUUCCCAUUAAAAAUGAGAUUUCUUAUUUGUUUGUCUGUUUUUACUCUGGGAGUAAUACUUUUUAAAUUACCUPUACAUAUAUAGUCACUGGCAUACUGAGAAUAUACAAUGAUCCUGGAAAUUGCAGUAACAAAAGCACACAACGAUUAUAGUAACUAUAAGAUACAAUAAAACAAAUAAAUAUGAAAGUAGAUUCAUGAAAAUGUAUUCCUPUAAAAUAUUGUUUUCCUACAGGCCUAUUUAЖCAAGAUGUUUCAUUUUACUGUAUAUUUUGUAGUUAAUAUAAAUGUUGCUCUAAUCAGAUUGCUUAAAAGCAUUUUUAUUAUAUUUAUGUUGUUGAACUAAUAUAUGAAAUAAGUAAAUGUAGCUCCCACAAGGUAAACUUCAUUGGUAAGAUUGCACUGUUCUGAUUAUGUAAGCAUUUGUACAUCUUCUUUGGAAAUAAAAGAUAAAAGAGCGAUACACAAAGCUUUCUUUUCUAACUUUUCCAAGCAAAAUCUAAAAUGUUUUAUGACAUUUUUCUGGCUGUGAUCUUAAAAUAAUUCAUAUCUAAAUAGUAUUUUGUCUAGGAGAUGCUUUCUCUCUAGUAGUUAGAAAUUAAAUCUGUGUCAGCAUUCCUAUUAAUGUCUCACUUUACUUUCAAGUAAUAUUGGUGCUAUUUAACAUUUUACAGUAAAUGUUACUUCUGAUACUUUAGUACAAUUUCAACUACAGUGAUUCAUGUAGAGAGACAGGGGAGUUGUCAACUUGGGCUACUGAACUACAUGCAUAAACUAAAAACUAACAGCUACAAACUUUUAAGAUUUCUCUAAUAUUGGUAUGUAACACAGGAUAAAGUUAUUCUUGUCAUUUUGAACUGUAGAGUCCUAUUUCAGUGUGAUGAAUCACUGUUGCUUUGAAAAAUCUCAUUAUUUCUGGGCCGGGCAUGGUGGCUCACCCCUGUAAUCCCAGCACUUUGGGAGGCCAAGGCGGGUGGAUCAUGAGGUCAGGAGAUCAAGACCAUCCUGGCCAACAUGGUGAUACCCCGUCUCUACUAAAAAUACAAAAAAAUUAGUUGGGCAUGGUGGCAUGCACCUGUAGUCCCAGCUACCUGGGAGGCUGAGGCAGGAGAAUUGCUUGAACCUGGGAGGCAGAGGUUGCAGUGAGCCAAAAUCAUGCCACUGCACUCCCGCCUGGCAACAGAGCAAGAGUCUGUCUCAAAAAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAGAAAAAUCUCAUUAUUUCAAAAUGAUAGACAUAUACCAAAAACAAGUCUAUAAUGUGAGUAGUUACUAAAAUUUACACAUCUUAAЖAGUGUGUAAAUGCUUAAAUUUCAGAAUUACCAUCAGAACCUCAAUUGACAUUCCUUUGAAUACGCUAAUAAGUGACAAAUAAGAUUAAUAAGAUUUUUCAAAAUCGCCAGGACUGGUGAAUAUAAAUGAUGAUUGAACUGGAAUAAUAUUGGGGACCAAAUCAAAUGAAUGAUUAAAUUAUGAAGCUCAUAUCCUUUUGAAGGUAGUUGCAAAGAGACAUUUCAAAACUGCCCUAGGCCAUUGCAGCAPCCUUAGAUGGGACGCAUAAUCAUUACCUUAAAGCAUCACCACUCAUUUUGACCAUAUAGAUUUUAUUAUGUUAGUUUAAAAGGUCAAUCAGCCUCAUGACUPUAUAGUUAUGUCUUGUAUUUAAAAACAUUUUUUAUACAUUUGGUUAUGUUGAUAAACCAAAAACAUUUGAUUAAUAAAAUAUCUAUUUGAAUAAAUUAUGAGCUAUCCUUUCAAЖCAGCUAUUGGCAAGUUUUAAACCCAAAAUAUAUACACAUAGUUCUGUAAUAAAACUGUUUGACUUCUCAAGUAACAUGACUUCCUUAUUUCUGAACAGUACUGGUUACUUUCAAAAUGAAUUUUUAUUGAGAUUUUCCAUUAACUAUUUUUUUCAAAGACUCAAAUUUUGUACCAAGUAAAUCCAGGCUPUAUGUACAAACAUGUUGUUUGUUUUAUUUGGGGCUGGGGGAGGUAUAUGAUGAGCAGACUUCUCGGAAUUCAUAAUAAAUUUUCUAAAAGCCUA
Sequence (SHORT NAMES ENCODING) GCACCGCGCCAGCCGGGCUGCAGCGGCCGCGCACCAAGGCUGCGAUGGGGCUGGAGACGGAGAAGGCGGACGUACm6AGCUCUUCAUGGACGACGACUCCUACAGCCACCACAGCGGCCUCGAGUACGCCGACCCCGAGAAGUUCGCGGACUCGGACCAGGACCGGGAUCCCCACCGGCUCAACUCGCAUCUCAAGCUGGGCUUCGAGGAUGUGAUCGCAGAGCCGGUGACUACGCACUCCUUUGACAAAGUGUGGAUCUGCAGCCAUGCCCUCUUUGAAAUCAGCAAAUACGUAAUGUACAAGUUCCUGACGGUGUUCCUGGCCAUUCCCCUGGCCUUCAUUGCGGGAAUUCUCUUUGCCACCCUCAGCUGUCUGCACAUCUGGAUUUUAAUGCCUUUUGUAAAGACCUGCCUAAUGGUUCUGCCUUCAGUGCAGACAAUAUGGAAGAGUGUGACAGAUGUUAUCAUUGCUCCAUUGUGUACGAGCGUAGGACGAUGCUUCUCUUCUGUCAGCCUGCAACUGAGCCAGGAUUGAAUACUUGGACCCCAGGUCUGGAGAUUGGGAUACUGUAAUACUUCUUUGUUAUUAUAACAUAAAAGCACCACUGUUCUGUUCAUUUCCUAGCUGUUCUAAUUAAGAAAACUAUUAAGAUGAGCAACCACAUUUAGAAAUGUUUAUUGACAGGUCUUUUCAAAUAAUGCUUUUCUAAUUAAUAGCCAAAGAUUUCAUAUCUAm6ACUUUGUAACCAGAAUUAUACAGUAAGUUGACACCACUUAGAUUUAAAGGCAGACAGUUUUGCUYUAGUACAAUAGUAUACAUUUUAUAAUGAUGAACUUAUAAUGAUUAAGGGACAUUUCUAUAAAAAUACUACAAUAGUUUUAUGCACAACUUCCCAUUAAAAAUGAGAUUUCUUAUUUGUUUGUCUGUUUUUACUCUGGGAGUAAUACUUUUUAAAUUACCUYUACAUAUAUAGUCACUGGCAUACUGAGAAUAUACAAUGAUCCUGGAAAUUGCAGUAACAAAAGCACACAACGAUUAUAGUAACUAUAAGAUACAAUAAAACAAAUAAAUAUGAAAGUAGAUUCAUGAAAAUGUAUUCCUYUAAAAUAUUGUUUUCCUACAGGCCUAUUUAm6ACAAGAUGUUUCAUUUUACUGUAUAUUUUGUAGUUAAUAUAAAUGUUGCUCUAAUCAGAUUGCUUAAAAGCAUUUUUAUUAUAUUUAUGUUGUUGAACUAAUAUAUGAAAUAAGUAAAUGUAGCUCCCACAAGGUAAACUUCAUUGGUAAGAUUGCACUGUUCUGAUUAUGUAAGCAUUUGUACAUCUUCUUUGGAAAUAAAAGAUAAAAGAGCGAUACACAAAGCUUUCUUUUCUAACUUUUCCAAGCAAAAUCUAAAAUGUUUUAUGACAUUUUUCUGGCUGUGAUCUUAAAAUAAUUCAUAUCUAAAUAGUAUUUUGUCUAGGAGAUGCUUUCUCUCUAGUAGUUAGAAAUUAAAUCUGUGUCAGCAUUCCUAUUAAUGUCUCACUUUACUUUCAAGUAAUAUUGGUGCUAUUUAACAUUUUACAGUAAAUGUUACUUCUGAUACUUUAGUACAAUUUCAACUACAGUGAUUCAUGUAGAGAGACAGGGGAGUUGUCAACUUGGGCUACUGAACUACAUGCAUAAACUAAAAACUAACAGCUACAAACUUUUAAGAUUUCUCUAAUAUUGGUAUGUAACACAGGAUAAAGUUAUUCUUGUCAUUUUGAACUGUAGAGUCCUAUUUCAGUGUGAUGAAUCACUGUUGCUUUGAAAAAUCUCAUUAUUUCUGGGCCGGGCAUGGUGGCUCACCCCUGUAAUCCCAGCACUUUGGGAGGCCAAGGCGGGUGGAUCAUGAGGUCAGGAGAUCAAGACCAUCCUGGCCAACAUGGUGAUACCCCGUCUCUACUAAAAAUACAAAAAAAUUAGUUGGGCAUGGUGGCAUGCACCUGUAGUCCCAGCUACCUGGGAGGCUGAGGCAGGAGAAUUGCUUGAACCUGGGAGGCAGAGGUUGCAGUGAGCCAAAAUCAUGCCACUGCACUCCCGCCUGGCAACAGAGCAAGAGUCUGUCUCAAAAAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAGAAAAAUCUCAUUAUUUCAAAAUGAUAGACAUAUACCAAAAACAAGUCUAUAAUGUGAGUAGUUACUAAAAUUUACACAUCUUAAm6AAGUGUGUAAAUGCUUAAAUUUCAGAAUUACCAUCAGAACCUCAAUUGACAUUCCUUUGAAUACGCUAAUAAGUGACAAAUAAGAUUAAUAAGAUUUUUCAAAAUCGCCAGGACUGGUGAAUAUAAAUGAUGAUUGAACUGGAAUAAUAUUGGGGACCAAAUCAAAUGAAUGAUUAAAUUAUGAAGCUCAUAUCCUUUUGAAGGUAGUUGCAAAGAGACAUUUCAAAACUGCCCUAGGCCAUUGCAGCAYCCUUAGAUGGGACGCAUAAUCAUUACCUUAAAGCAUCACCACUCAUUUUGACCAUAUAGAUUUUAUUAUGUUAGUUUAAAAGGUCAAUCAGCCUCAUGACUYUAUAGUUAUGUCUUGUAUUUAAAAACAUUUUUUAUACAUUUGGUUAUGUUGAUAAACCAAAAACAUUUGAUUAAUAAAAUAUCUAUUUGAAUAAAUUAUGAGCUAUCCUUUCAAm6ACAGCUAUUGGCAAGUUUUAAACCCAAAAUAUAUACACAUAGUUCUGUAAUAAAACUGUUUGACUUCUCAAGUAACAUGACUUCCUUAUUUCUGAACAGUACUGGUUACUUUCAAAAUGAAUUUUUAUUGAGAUUUUCCAUUAACUAUUUUUUUCAAAGACUCAAAUUUUGUACCAAGUAAAUCCAGGCUYUAUGUACAAACAUGUUGUUUGUUUUAUUUGGGGCUGGGGGAGGUAUAUGAUGAGCAGACUUCUCGGAAUUCAUAAUAAAUUUUCUAAAAGCCUA
Sequence (MODOMICS CODE ENCODING) GCACCGCGCCAGCCGGGCUGCAGCGGCCGCGCACCAAGGCUGCGAUGGGGCUGGAGACGGAGAAGGCGGACGUAC2000000006AGCUCUUCAUGGACGACGACUCCUACAGCCACCACAGCGGCCUCGAGUACGCCGACCCCGAGAAGUUCGCGGACUCGGACCAGGACCGGGAUCCCCACCGGCUCAACUCGCAUCUCAAGCUGGGCUUCGAGGAUGUGAUCGCAGAGCCGGUGACUACGCACUCCUUUGACAAAGUGUGGAUCUGCAGCCAUGCCCUCUUUGAAAUCAGCAAAUACGUAAUGUACAAGUUCCUGACGGUGUUCCUGGCCAUUCCCCUGGCCUUCAUUGCGGGAAUUCUCUUUGCCACCCUCAGCUGUCUGCACAUCUGGAUUUUAAUGCCUUUUGUAAAGACCUGCCUAAUGGUUCUGCCUUCAGUGCAGACAAUAUGGAAGAGUGUGACAGAUGUUAUCAUUGCUCCAUUGUGUACGAGCGUAGGACGAUGCUUCUCUUCUGUCAGCCUGCAACUGAGCCAGGAUUGAAUACUUGGACCCCAGGUCUGGAGAUUGGGAUACUGUAAUACUUCUUUGUUAUUAUAACAUAAAAGCACCACUGUUCUGUUCAUUUCCUAGCUGUUCUAAUUAAGAAAACUAUUAAGAUGAGCAACCACAUUUAGAAAUGUUUAUUGACAGGUCUUUUCAAAUAAUGCUUUUCUAAUUAAUAGCCAAAGAUUUCAUAUCUA2000000006ACUUUGUAACCAGAAUUAUACAGUAAGUUGACACCACUUAGAUUUAAAGGCAGACAGUUUUGCU2000000009UUAGUACAAUAGUAUACAUUUUAUAAUGAUGAACUUAUAAUGAUUAAGGGACAUUUCUAUAAAAAUACUACAAUAGUUUUAUGCACAACUUCCCAUUAAAAAUGAGAUUUCUUAUUUGUUUGUCUGUUUUUACUCUGGGAGUAAUACUUUUUAAAUUACCU2000000009UUACAUAUAUAGUCACUGGCAUACUGAGAAUAUACAAUGAUCCUGGAAAUUGCAGUAACAAAAGCACACAACGAUUAUAGUAACUAUAAGAUACAAUAAAACAAAUAAAUAUGAAAGUAGAUUCAUGAAAAUGUAUUCCU2000000009UUAAAAUAUUGUUUUCCUACAGGCCUAUUUA2000000006ACAAGAUGUUUCAUUUUACUGUAUAUUUUGUAGUUAAUAUAAAUGUUGCUCUAAUCAGAUUGCUUAAAAGCAUUUUUAUUAUAUUUAUGUUGUUGAACUAAUAUAUGAAAUAAGUAAAUGUAGCUCCCACAAGGUAAACUUCAUUGGUAAGAUUGCACUGUUCUGAUUAUGUAAGCAUUUGUACAUCUUCUUUGGAAAUAAAAGAUAAAAGAGCGAUACACAAAGCUUUCUUUUCUAACUUUUCCAAGCAAAAUCUAAAAUGUUUUAUGACAUUUUUCUGGCUGUGAUCUUAAAAUAAUUCAUAUCUAAAUAGUAUUUUGUCUAGGAGAUGCUUUCUCUCUAGUAGUUAGAAAUUAAAUCUGUGUCAGCAUUCCUAUUAAUGUCUCACUUUACUUUCAAGUAAUAUUGGUGCUAUUUAACAUUUUACAGUAAAUGUUACUUCUGAUACUUUAGUACAAUUUCAACUACAGUGAUUCAUGUAGAGAGACAGGGGAGUUGUCAACUUGGGCUACUGAACUACAUGCAUAAACUAAAAACUAACAGCUACAAACUUUUAAGAUUUCUCUAAUAUUGGUAUGUAACACAGGAUAAAGUUAUUCUUGUCAUUUUGAACUGUAGAGUCCUAUUUCAGUGUGAUGAAUCACUGUUGCUUUGAAAAAUCUCAUUAUUUCUGGGCCGGGCAUGGUGGCUCACCCCUGUAAUCCCAGCACUUUGGGAGGCCAAGGCGGGUGGAUCAUGAGGUCAGGAGAUCAAGACCAUCCUGGCCAACAUGGUGAUACCCCGUCUCUACUAAAAAUACAAAAAAAUUAGUUGGGCAUGGUGGCAUGCACCUGUAGUCCCAGCUACCUGGGAGGCUGAGGCAGGAGAAUUGCUUGAACCUGGGAGGCAGAGGUUGCAGUGAGCCAAAAUCAUGCCACUGCACUCCCGCCUGGCAACAGAGCAAGAGUCUGUCUCAAAAAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAGAAAAAUCUCAUUAUUUCAAAAUGAUAGACAUAUACCAAAAACAAGUCUAUAAUGUGAGUAGUUACUAAAAUUUACACAUCUUAA2000000006AAGUGUGUAAAUGCUUAAAUUUCAGAAUUACCAUCAGAACCUCAAUUGACAUUCCUUUGAAUACGCUAAUAAGUGACAAAUAAGAUUAAUAAGAUUUUUCAAAAUCGCCAGGACUGGUGAAUAUAAAUGAUGAUUGAACUGGAAUAAUAUUGGGGACCAAAUCAAAUGAAUGAUUAAAUUAUGAAGCUCAUAUCCUUUUGAAGGUAGUUGCAAAGAGACAUUUCAAAACUGCCCUAGGCCAUUGCAGCA2000000009UCCUUAGAUGGGACGCAUAAUCAUUACCUUAAAGCAUCACCACUCAUUUUGACCAUAUAGAUUUUAUUAUGUUAGUUUAAAAGGUCAAUCAGCCUCAUGACU2000000009UUAUAGUUAUGUCUUGUAUUUAAAAACAUUUUUUAUACAUUUGGUUAUGUUGAUAAACCAAAAACAUUUGAUUAAUAAAAUAUCUAUUUGAAUAAAUUAUGAGCUAUCCUUUCAA2000000006ACAGCUAUUGGCAAGUUUUAAACCCAAAAUAUAUACACAUAGUUCUGUAAUAAAACUGUUUGACUUCUCAAGUAACAUGACUUCCUUAUUUCUGAACAGUACUGGUUACUUUCAAAAUGAAUUUUUAUUGAGAUUUUCCAUUAACUAUUUUUUUCAAAGACUCAAAUUUUGUACCAAGUAAAUCCAGGCU2000000009UUAUGUACAAACAUGUUGUUUGUUUUAUUUGGGGCUGGGGGAGGUAUAUGAUGAGCAGACUUCUCGGAAUUCAUAAUAAAUUUUCUAAAAGCCUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 76 734 798 959 1099 1130 2203 2452 2554 2669 2859
Modification Positions m6A m6A Y Y Y m6A m6A Y Y m6A Y
Genomic Coordinates 7:116499813:+ 7:116506322:+ 7:116506386:+ 7:116506547:+ 7:116506687:+ 7:116506718:+ 7:116507791:+ 7:116508040:+ 7:116508142:+ 7:116508257:+ 7:116508447:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
bXBqJigD9oV3
dknfVe6BK8aP
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP