General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000612286
Gene ID:	ENSG00000105997
Gene Name:	HOXA3
Sequence (UNICHARACTER ENCODING)	GCAUUCUUUUGCUCCGCUCCGUCCUGCCUGCUUCGGAGCUCUGCCUUCCAGCCGGGCUCGGCUGUGCUUUGUCCGGAGAUGGCGAGCGAAGGGAAGCCCCGGCCAGGCCAGGCCUGGCGGCUCCCGCUGGAGAUUGGGCGCGCUCCGUUCCCGGCGCCGCGGCAGCAGCUUUGCAACUCGCAACCUGGCUAAUUUCCUGCGUCCUCUGGCACCAGGAAAGAGGACAAUUCUUCUCUCGGGCUGCCCAAGCGACAGCUGUCAGAGGGGCAGGAGCUUCUGGGAGCCACCGUCUGAAGGCUACGUGUGCCGCCUGGCCAUUCAAACUGUCAAUUUUAGGUCCAGAAGUGUCCAAACCACAAGUUCUCAAAACUCUCUGAAAAAUGGCUCCCUCCGAGUUAAGCAAUUCUGAAAGGCAUUCUCUGGGAAAAGUCUGUGGAGGAGAGAGGGAUCUUCUUGCAAAUAAUGUGGUCUCAGGCAAGGACACAGCAUCUUGGCUGUCUGCUAAAAAAAAAAAAUGCCUAGACUCUCAGUGGAAAUUGAGUGUCAAGCUGCAAAAUCUCAAAUGGCAGACUAUCAUCAUUUAAGAGCGCCUGGACACCGGAAAAGGCGAUUCCCUGAGCGCCUGGAGUUGGAGACAAUUCCUGGUUCAGAAUUUAAACAUCUUUCUAGGUCUGCGCGGGGCGGCCAUUGGCGGCGGAGUGUCACGUGACCGCGGGGGCGUGCCAAUGUGCGCCCUCACGGGUGUCAAACCCCUGUCAGAGUGUGCGAUCAAGAUCGUGAAACAACGCGAUGCAAAAAGCGACCUACUACGACAGCUCGGCGAUCUACGGUGGCUACCCCUACCAGGCAGCCAACGGGUUCGCUUAUAAUGCCAAUCAGCAGCCGUACCCGGCGUCCGCCGCUUUGGGCGCCGACGGCGAGUACCACCGACCCGCCUGCUCCCUCCAGUCUCCCUCCAGCGCCGGGGGCCACCCCAAGGCACACGAЖCUGAGUGAGGCGUGCCUGCGCACCCUGAGCGCCCCACCUAGCCAGCCUCCAAGCCUGGGAGAGCCGCCCCUGCACCCGCCGCCGCCCCAGGCCGCGCCCCCUGCCCCACAGCCGCCUCAGCCCGCACCUCAGCCCCCUGCACCUACCCCUGCCGCGCCCCCGCCUCCCUCUUCUGCCUCCCCUCCUCAGAAUGCCAGCAACAACCCUACCCCUGCCAACGCGGCCAAGAGCCCCCUGCUCAACUCACCCACAGUGGCCAAACAAAUCUUCCCCUGGAUGAAAGAGUCUCGACAAAACACAAAGCAGAAAACCAGCAGCUCCAGCUCAGGCGAAAGCUGCGCUGGCGACAAGAGCCCGCCGGGGCAGGCUUCGUCCAAGCGCGCGCGCACGGCCUACACGAGCGCGCAGCUGGUGGAGCUGGAGAAAGAGUUCCACUUCAACCGCUACCUGUGCCGGCCGCGCCGGGUGGAGAUGGCCAAUCUGCUGAACCUCACUGAGCGCCAGAUCAAGAUCUGGUUCCAGAAUCGCCGCAUGAAGUACAAAAAGGAUCAGAAGGGCAAGGGCAUGCUAACGUCAUCGGGGGGCCAGUCUCCAAGUCGCAGCCCCGUGCCCCCCGGAGCCGGUGGCUAUCUGAЖCUCUAUGCAUUCGCUGGUCAACAGCGUCCCGUAUGAGCCCCAGUCGCCCCCGCCCUUCUCCAAGCCCCCCCAGGGUACCUACGGGCUGCCCCCCGCCUCCUACCCUGCGUCCCUGCCCAGCUGCGCACCCCCGCCACCCCCACAGAAGCGCUACACGGCGGCAGGGGCGGGCGCAGGGGGCACCCCCGACUAUGACCCGCACGCUCAUGGCCUGCAGGGCAACGGCAGCUAUGGGACCCCACACAUACAGGGAAGCCCCGUCUUCGUGGGGGGCAGCUAUGUGGAGCCCAUGAGCAACUCCGGGCCAGCCCUCUUUGGUCUAACUCACCUCCCCCACGCUGCCUCGGGCGCCAUGGЖCUAUGGGGGUGCCGGGCCGCUGGGCAGCGGCCACCACCACGGGCCGGGGCCUGGGGAGCCGCACCCCACCUACACGGЖCCUUACCGGCCACCAUCCUUCUCAGGGAAGAAUUCAGGAAGCACCCAAGCUCACCCACCUGUGAUAGUGGGCUUGGGGCUACGCGCCAGGAGAGUCUCCCCCCACCCACCUUUUUUCUUUGGUUGCUUUUUUUUUUUUUUUUUUUUAGGUUCUUCCUGCCCUUUCCUUCCUUCCUUUUCUCUCUUCUCCGCCCCGCACUCCGUUUCCCGGUUUCCCCCCUCGUUGGUAAGGCGUUUUUAUAGUUUAUGUGACGUAGCAAUCUUGGUUGCUGGAAUGGCUGUAUCAUAGCGAUAUUUAUCUCUUCCUGCUCCUCGAUAGGCCACUGGCCCUGCACCCUUUACCUUCUCCACUCUUUGAUCAGAAACAGGGUAUAUGAACAAAUUUUCUAGUCGAGUUUUCAAUGUGAAUUUGUUCUUACAUUAUGGCUCCCGAGGGGAAGCGAUUACUUUUUUUAAUUUUAAAUUUUUUUUUUAAUUGCACUUCUUGUAAAGAGUGAGAAAAAAAAUCAAAGGCGCUUUGAAACAGGGGCUCUCUGUGCAAGGAUGACUAAGUGUACGUCUUUCCGUGUGUGUAUGCUGGUGAЖCAGUCAGAUUUAUUUAUAUUUUUUUGCAAGCAUUGAAUAAUCUAAGUUUUAAAUAUUAUUUAUCCCCAPCCGUUCGUAUUUAUAUUAAAGAAUUCUGUACCCUGAUGGUUCAGAAGGGUUCUUGGGCCUUUUGUUCAAUUGUGUAUUGGCGUACUUAGAAUUUUUUUUAUUUGAAAGAGAAAUAUAAUUCCUPUAAACGGUAACGAUACAAUAAAACCAGAGAAGAUCCAGCUUUUGAAAACAGUGAUUUAGGUUUGUAACAPCCGGCAAAACUGAAAAAAAAAAUCUGUAAACGCGAAAAAUACUAGAUUUGUUUUGAGAGUUCUUCAUUCCUUGCUGCUCACAUUCUGAGAAACAAAAAGAAAUAAAGUUUUUAUUCUGAAUAA
Sequence (SHORT NAMES ENCODING)	GCAUUCUUUUGCUCCGCUCCGUCCUGCCUGCUUCGGAGCUCUGCCUUCCAGCCGGGCUCGGCUGUGCUUUGUCCGGAGAUGGCGAGCGAAGGGAAGCCCCGGCCAGGCCAGGCCUGGCGGCUCCCGCUGGAGAUUGGGCGCGCUCCGUUCCCGGCGCCGCGGCAGCAGCUUUGCAACUCGCAACCUGGCUAAUUUCCUGCGUCCUCUGGCACCAGGAAAGAGGACAAUUCUUCUCUCGGGCUGCCCAAGCGACAGCUGUCAGAGGGGCAGGAGCUUCUGGGAGCCACCGUCUGAAGGCUACGUGUGCCGCCUGGCCAUUCAAACUGUCAAUUUUAGGUCCAGAAGUGUCCAAACCACAAGUUCUCAAAACUCUCUGAAAAAUGGCUCCCUCCGAGUUAAGCAAUUCUGAAAGGCAUUCUCUGGGAAAAGUCUGUGGAGGAGAGAGGGAUCUUCUUGCAAAUAAUGUGGUCUCAGGCAAGGACACAGCAUCUUGGCUGUCUGCUAAAAAAAAAAAAUGCCUAGACUCUCAGUGGAAAUUGAGUGUCAAGCUGCAAAAUCUCAAAUGGCAGACUAUCAUCAUUUAAGAGCGCCUGGACACCGGAAAAGGCGAUUCCCUGAGCGCCUGGAGUUGGAGACAAUUCCUGGUUCAGAAUUUAAACAUCUUUCUAGGUCUGCGCGGGGCGGCCAUUGGCGGCGGAGUGUCACGUGACCGCGGGGGCGUGCCAAUGUGCGCCCUCACGGGUGUCAAACCCCUGUCAGAGUGUGCGAUCAAGAUCGUGAAACAACGCGAUGCAAAAAGCGACCUACUACGACAGCUCGGCGAUCUACGGUGGCUACCCCUACCAGGCAGCCAACGGGUUCGCUUAUAAUGCCAAUCAGCAGCCGUACCCGGCGUCCGCCGCUUUGGGCGCCGACGGCGAGUACCACCGACCCGCCUGCUCCCUCCAGUCUCCCUCCAGCGCCGGGGGCCACCCCAAGGCACACGAm6ACUGAGUGAGGCGUGCCUGCGCACCCUGAGCGCCCCACCUAGCCAGCCUCCAAGCCUGGGAGAGCCGCCCCUGCACCCGCCGCCGCCCCAGGCCGCGCCCCCUGCCCCACAGCCGCCUCAGCCCGCACCUCAGCCCCCUGCACCUACCCCUGCCGCGCCCCCGCCUCCCUCUUCUGCCUCCCCUCCUCAGAAUGCCAGCAACAACCCUACCCCUGCCAACGCGGCCAAGAGCCCCCUGCUCAACUCACCCACAGUGGCCAAACAAAUCUUCCCCUGGAUGAAAGAGUCUCGACAAAACACAAAGCAGAAAACCAGCAGCUCCAGCUCAGGCGAAAGCUGCGCUGGCGACAAGAGCCCGCCGGGGCAGGCUUCGUCCAAGCGCGCGCGCACGGCCUACACGAGCGCGCAGCUGGUGGAGCUGGAGAAAGAGUUCCACUUCAACCGCUACCUGUGCCGGCCGCGCCGGGUGGAGAUGGCCAAUCUGCUGAACCUCACUGAGCGCCAGAUCAAGAUCUGGUUCCAGAAUCGCCGCAUGAAGUACAAAAAGGAUCAGAAGGGCAAGGGCAUGCUAACGUCAUCGGGGGGCCAGUCUCCAAGUCGCAGCCCCGUGCCCCCCGGAGCCGGUGGCUAUCUGAm6ACUCUAUGCAUUCGCUGGUCAACAGCGUCCCGUAUGAGCCCCAGUCGCCCCCGCCCUUCUCCAAGCCCCCCCAGGGUACCUACGGGCUGCCCCCCGCCUCCUACCCUGCGUCCCUGCCCAGCUGCGCACCCCCGCCACCCCCACAGAAGCGCUACACGGCGGCAGGGGCGGGCGCAGGGGGCACCCCCGACUAUGACCCGCACGCUCAUGGCCUGCAGGGCAACGGCAGCUAUGGGACCCCACACAUACAGGGAAGCCCCGUCUUCGUGGGGGGCAGCUAUGUGGAGCCCAUGAGCAACUCCGGGCCAGCCCUCUUUGGUCUAACUCACCUCCCCCACGCUGCCUCGGGCGCCAUGGm6ACUAUGGGGGUGCCGGGCCGCUGGGCAGCGGCCACCACCACGGGCCGGGGCCUGGGGAGCCGCACCCCACCUACACGGm6ACCUUACCGGCCACCAUCCUUCUCAGGGAAGAAUUCAGGAAGCACCCAAGCUCACCCACCUGUGAUAGUGGGCUUGGGGCUACGCGCCAGGAGAGUCUCCCCCCACCCACCUUUUUUCUUUGGUUGCUUUUUUUUUUUUUUUUUUUUAGGUUCUUCCUGCCCUUUCCUUCCUUCCUUUUCUCUCUUCUCCGCCCCGCACUCCGUUUCCCGGUUUCCCCCCUCGUUGGUAAGGCGUUUUUAUAGUUUAUGUGACGUAGCAAUCUUGGUUGCUGGAAUGGCUGUAUCAUAGCGAUAUUUAUCUCUUCCUGCUCCUCGAUAGGCCACUGGCCCUGCACCCUUUACCUUCUCCACUCUUUGAUCAGAAACAGGGUAUAUGAACAAAUUUUCUAGUCGAGUUUUCAAUGUGAAUUUGUUCUUACAUUAUGGCUCCCGAGGGGAAGCGAUUACUUUUUUUAAUUUUAAAUUUUUUUUUUAAUUGCACUUCUUGUAAAGAGUGAGAAAAAAAAUCAAAGGCGCUUUGAAACAGGGGCUCUCUGUGCAAGGAUGACUAAGUGUACGUCUUUCCGUGUGUGUAUGCUGGUGAm6ACAGUCAGAUUUAUUUAUAUUUUUUUGCAAGCAUUGAAUAAUCUAAGUUUUAAAUAUUAUUUAUCCCCAYCCGUUCGUAUUUAUAUUAAAGAAUUCUGUACCCUGAUGGUUCAGAAGGGUUCUUGGGCCUUUUGUUCAAUUGUGUAUUGGCGUACUUAGAAUUUUUUUUAUUUGAAAGAGAAAUAUAAUUCCUYUAAACGGUAACGAUACAAUAAAACCAGAGAAGAUCCAGCUUUUGAAAACAGUGAUUUAGGUUUGUAACAYCCGGCAAAACUGAAAAAAAAAAUCUGUAAACGCGAAAAAUACUAGAUUUGUUUUGAGAGUUCUUCAUUCCUUGCUGCUCACAUUCUGAGAAACAAAAAGAAAUAAAGUUUUUAUUCUGAAUAA
Sequence (MODOMICS CODE ENCODING)	GCAUUCUUUUGCUCCGCUCCGUCCUGCCUGCUUCGGAGCUCUGCCUUCCAGCCGGGCUCGGCUGUGCUUUGUCCGGAGAUGGCGAGCGAAGGGAAGCCCCGGCCAGGCCAGGCCUGGCGGCUCCCGCUGGAGAUUGGGCGCGCUCCGUUCCCGGCGCCGCGGCAGCAGCUUUGCAACUCGCAACCUGGCUAAUUUCCUGCGUCCUCUGGCACCAGGAAAGAGGACAAUUCUUCUCUCGGGCUGCCCAAGCGACAGCUGUCAGAGGGGCAGGAGCUUCUGGGAGCCACCGUCUGAAGGCUACGUGUGCCGCCUGGCCAUUCAAACUGUCAAUUUUAGGUCCAGAAGUGUCCAAACCACAAGUUCUCAAAACUCUCUGAAAAAUGGCUCCCUCCGAGUUAAGCAAUUCUGAAAGGCAUUCUCUGGGAAAAGUCUGUGGAGGAGAGAGGGAUCUUCUUGCAAAUAAUGUGGUCUCAGGCAAGGACACAGCAUCUUGGCUGUCUGCUAAAAAAAAAAAAUGCCUAGACUCUCAGUGGAAAUUGAGUGUCAAGCUGCAAAAUCUCAAAUGGCAGACUAUCAUCAUUUAAGAGCGCCUGGACACCGGAAAAGGCGAUUCCCUGAGCGCCUGGAGUUGGAGACAAUUCCUGGUUCAGAAUUUAAACAUCUUUCUAGGUCUGCGCGGGGCGGCCAUUGGCGGCGGAGUGUCACGUGACCGCGGGGGCGUGCCAAUGUGCGCCCUCACGGGUGUCAAACCCCUGUCAGAGUGUGCGAUCAAGAUCGUGAAACAACGCGAUGCAAAAAGCGACCUACUACGACAGCUCGGCGAUCUACGGUGGCUACCCCUACCAGGCAGCCAACGGGUUCGCUUAUAAUGCCAAUCAGCAGCCGUACCCGGCGUCCGCCGCUUUGGGCGCCGACGGCGAGUACCACCGACCCGCCUGCUCCCUCCAGUCUCCCUCCAGCGCCGGGGGCCACCCCAAGGCACACGA2000000006ACUGAGUGAGGCGUGCCUGCGCACCCUGAGCGCCCCACCUAGCCAGCCUCCAAGCCUGGGAGAGCCGCCCCUGCACCCGCCGCCGCCCCAGGCCGCGCCCCCUGCCCCACAGCCGCCUCAGCCCGCACCUCAGCCCCCUGCACCUACCCCUGCCGCGCCCCCGCCUCCCUCUUCUGCCUCCCCUCCUCAGAAUGCCAGCAACAACCCUACCCCUGCCAACGCGGCCAAGAGCCCCCUGCUCAACUCACCCACAGUGGCCAAACAAAUCUUCCCCUGGAUGAAAGAGUCUCGACAAAACACAAAGCAGAAAACCAGCAGCUCCAGCUCAGGCGAAAGCUGCGCUGGCGACAAGAGCCCGCCGGGGCAGGCUUCGUCCAAGCGCGCGCGCACGGCCUACACGAGCGCGCAGCUGGUGGAGCUGGAGAAAGAGUUCCACUUCAACCGCUACCUGUGCCGGCCGCGCCGGGUGGAGAUGGCCAAUCUGCUGAACCUCACUGAGCGCCAGAUCAAGAUCUGGUUCCAGAAUCGCCGCAUGAAGUACAAAAAGGAUCAGAAGGGCAAGGGCAUGCUAACGUCAUCGGGGGGCCAGUCUCCAAGUCGCAGCCCCGUGCCCCCCGGAGCCGGUGGCUAUCUGA2000000006ACUCUAUGCAUUCGCUGGUCAACAGCGUCCCGUAUGAGCCCCAGUCGCCCCCGCCCUUCUCCAAGCCCCCCCAGGGUACCUACGGGCUGCCCCCCGCCUCCUACCCUGCGUCCCUGCCCAGCUGCGCACCCCCGCCACCCCCACAGAAGCGCUACACGGCGGCAGGGGCGGGCGCAGGGGGCACCCCCGACUAUGACCCGCACGCUCAUGGCCUGCAGGGCAACGGCAGCUAUGGGACCCCACACAUACAGGGAAGCCCCGUCUUCGUGGGGGGCAGCUAUGUGGAGCCCAUGAGCAACUCCGGGCCAGCCCUCUUUGGUCUAACUCACCUCCCCCACGCUGCCUCGGGCGCCAUGG2000000006ACUAUGGGGGUGCCGGGCCGCUGGGCAGCGGCCACCACCACGGGCCGGGGCCUGGGGAGCCGCACCCCACCUACACGG2000000006ACCUUACCGGCCACCAUCCUUCUCAGGGAAGAAUUCAGGAAGCACCCAAGCUCACCCACCUGUGAUAGUGGGCUUGGGGCUACGCGCCAGGAGAGUCUCCCCCCACCCACCUUUUUUCUUUGGUUGCUUUUUUUUUUUUUUUUUUUUAGGUUCUUCCUGCCCUUUCCUUCCUUCCUUUUCUCUCUUCUCCGCCCCGCACUCCGUUUCCCGGUUUCCCCCCUCGUUGGUAAGGCGUUUUUAUAGUUUAUGUGACGUAGCAAUCUUGGUUGCUGGAAUGGCUGUAUCAUAGCGAUAUUUAUCUCUUCCUGCUCCUCGAUAGGCCACUGGCCCUGCACCCUUUACCUUCUCCACUCUUUGAUCAGAAACAGGGUAUAUGAACAAAUUUUCUAGUCGAGUUUUCAAUGUGAAUUUGUUCUUACAUUAUGGCUCCCGAGGGGAAGCGAUUACUUUUUUUAAUUUUAAAUUUUUUUUUUAAUUGCACUUCUUGUAAAGAGUGAGAAAAAAAAUCAAAGGCGCUUUGAAACAGGGGCUCUCUGUGCAAGGAUGACUAAGUGUACGUCUUUCCGUGUGUGUAUGCUGGUGA2000000006ACAGUCAGAUUUAUUUAUAUUUUUUUGCAAGCAUUGAAUAAUCUAAGUUUUAAAUAUUAUUUAUCCCCA2000000009UCCGUUCGUAUUUAUAUUAAAGAAUUCUGUACCCUGAUGGUUCAGAAGGGUUCUUGGGCCUUUUGUUCAAUUGUGUAUUGGCGUACUUAGAAUUUUUUUUAUUUGAAAGAGAAAUAUAAUUCCU2000000009UUAAACGGUAACGAUACAAUAAAACCAGAGAAGAUCCAGCUUUUGAAAACAGUGAUUUAGGUUUGUAACA2000000009UCCGGCAAAACUGAAAAAAAAAAUCUGUAAACGCGAAAAAUACUAGAUUUGUUUUGAGAGUUCUUCAUUCCUUGCUGCUCACAUUCUGAGAAACAAAAAGAAAUAAAGUUUUUAUUCUGAAUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	987	1622	1979	2057	2640	2709	2833	2903
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	Y	Y
Genomic Coordinates	7:27110443:-	7:27108414:-	7:27108057:-	7:27107979:-	7:27107396:-	7:27107327:-	7:27107203:-	7:27107133:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5Nnepx5V7yHo aHkqKEJkRYyb KRfQJWH4K5KH msuJfBpJvM5H VyCX26p5UBRL	5FhTyQVy2tKW 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb KRfQJWH4K5KH msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8