General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000343483
Gene ID:	ENSG00000078399
Gene Name:	HOXA9
Sequence (UNICHARACTER ENCODING)	GCCACCAAGUUGUUACAUGAAAUCUGCAGUUUCAUAAUUUCCGUGGGUCGGGCCGGGCGGGCCAGGCGCUGGGCACGGUGAUGGCCACCACUGGGGCCCUGGGCAACUACUACGUGGЖCUCGUUCCUGCUGGGCGCCGACGCCGCGGAUGAGCUGAGCGUUGGCCGCUAUGCGCCGGGGACCCUGGGCCAGCCUCCCCGGCAGGCGGCGACGCUGGCCGAGCACCCCGACUUCAGCCCGUGCAGCUUCCAGUCCAAGGCGACGGUGUUUGGCGCCUCGUGGAACCCAGUGCACGCGGCGGGCGCCAACGCUGUACCCGCUGCGGUGUACCACCACCAUCACCACCACCCCUACGUGCACCCCCAGGCGCCCGUGGCGGCGGCGGCGCCGGACGGCAGGUACAUGCGCUCCUGGCUGGAGCCCACGCCCGGUGCGCUCUCCUUCGCGGGCUUGCCCUCCAGCCGGCCUUAUGGCAUUAAACCUGAACCGCUGUCGGCCAGAAGGGGUGACUGUCCCACGCUUGACACUCACACUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCPCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGCCUUCUCUGAAAACAAUGCUGAGAAUGAGAGCGGCGGAGACAAGCCCCCCAUCGAUCCCAAUAACCCAGCAGCCAACUGGCUUCAUGCGCGCUCCACUCGGAAAAAGCGGUGCCCCUAUACAAAACACCAGACCCUGGAACUGGAGAAAGAGUUUCUGUUCAACAUGUACCUCACCAGGGACCGCAGGUACGAGGUGGCUCGACUGCUCAACCUCACCGAGAGGCAGGUCAAGAUCUGGUUCCAGAЖCCGCAGGAUGAAAAUGAAGAAAAUCAACAAAGACCGAGCAAAAGACGAGUGAUGCCAUUUGGGCUUAUUUAGAAAAAAGGGUAAGCUAGAGAGAAAAAGAAAGAЖCUGUCCGUCCCCCUUCCGCCUUCUCCCUUCUCUCACCCCCACCCUAGCCUCCACCAUCCCCGCACAAAGCGGCUCUAAACCUCAGGCCACAUCUUUUCCAAGGCAAЖCCCUGUUCAGGCUGGCUCGUAGGCCUGCCGCUUUGAUGGЖGGAGGUAUUGUAAGCUUUCCAUUUUCUAUAAGAAAAAGGAAAAGUUGAGGGGGGGGCAUUAGUGCUGAUAGCUGUGUGUGUUAGCUUGUAUAUAUAUUUUUAAAAAUCUACCUGUUCCUGACUUAAAACAAAAGGAAAGAAACUACCUUUUUAUAAUGCACAACUGUUGAUGGUAGGCUGUAUAGUUUUUAGUCUGUGUAGUUAAUUUAAUUUGCAGUUUGUGCGGCAGAUUGCUCUGCCAAGAUACUUGAACACUGUGUUUUAUUGUGGUAAUUAUGUUUUGUGAUUCAAACUUCUGUGUACUGGGUGAUGCACCCAUUGUGAUUGUGGAAGAUAGAAUUCAAUPUGAACUCAGGUUGUUUAUGAGGGGAAAAAAACAGUUGCAUAGAGUAUAGCUCUGUAGUGGAAUAUGUCUUCUGUAUAACUAGGCUGUUAACCUAUGAUUGUAAAGUAGCUGUAAGAAUUUCCCAGUGAAAUAAAAAAAAAUUUUAAGUGUUCUCGGGGAUGCAUAGAUUCAUCAUUUUCUCCACCUUAAAAAUGCGGGCAUUUAAGUCUGUCCAUUAUCUAUAUAGUCCUGUCUUGUCUAUUGUAUAUAUAAUCUAUAUGAUUAAAGAAAAUAUGCAUAAUCAGACAAGCUUGAAUAUUGUUUUUGCACCAGACGAACAGUGAGGAAAUUCGGAGCUAUACAUAUGUGCAGAAGGUUACUACCUAGGGUUUAUGCUUAAUUUUAAUUGGAGGAAAUGAAUGCUGAUUGUAACGGAGUUAAUUUUAUUGAUAAUAAAUUAUACACUAUGAAACCGCCAUUGGGCUACUGUAGAUUUGUAUCCUUGAUGAAUCUGGGGUUUCCAUCAGACUGAACUUACACUGUAUAUUUUGCAAUAGUUACCUCAAGGCCUACUGACCAAAUUGUUGUGUUGAGAUGAUAUUUAACUUUUUGCCAAAUAAAAUAUAUUGAUUCUUUUCUA
Sequence (SHORT NAMES ENCODING)	GCCACCAAGUUGUUACAUGAAAUCUGCAGUUUCAUAAUUUCCGUGGGUCGGGCCGGGCGGGCCAGGCGCUGGGCACGGUGAUGGCCACCACUGGGGCCCUGGGCAACUACUACGUGGm6ACUCGUUCCUGCUGGGCGCCGACGCCGCGGAUGAGCUGAGCGUUGGCCGCUAUGCGCCGGGGACCCUGGGCCAGCCUCCCCGGCAGGCGGCGACGCUGGCCGAGCACCCCGACUUCAGCCCGUGCAGCUUCCAGUCCAAGGCGACGGUGUUUGGCGCCUCGUGGAACCCAGUGCACGCGGCGGGCGCCAACGCUGUACCCGCUGCGGUGUACCACCACCAUCACCACCACCCCUACGUGCACCCCCAGGCGCCCGUGGCGGCGGCGGCGCCGGACGGCAGGUACAUGCGCUCCUGGCUGGAGCCCACGCCCGGUGCGCUCUCCUUCGCGGGCUUGCCCUCCAGCCGGCCUUAUGGCAUUAAACCUGAACCGCUGUCGGCCAGAAGGGGUGACUGUCCCACGCUUGACACUCACACUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCYCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGCCUUCUCUGAAAACAAUGCUGAGAAUGAGAGCGGCGGAGACAAGCCCCCCAUCGAUCCCAAUAACCCAGCAGCCAACUGGCUUCAUGCGCGCUCCACUCGGAAAAAGCGGUGCCCCUAUACAAAACACCAGACCCUGGAACUGGAGAAAGAGUUUCUGUUCAACAUGUACCUCACCAGGGACCGCAGGUACGAGGUGGCUCGACUGCUCAACCUCACCGAGAGGCAGGUCAAGAUCUGGUUCCAGAm6ACCGCAGGAUGAAAAUGAAGAAAAUCAACAAAGACCGAGCAAAAGACGAGUGAUGCCAUUUGGGCUUAUUUAGAAAAAAGGGUAAGCUAGAGAGAAAAAGAAAGAm6ACUGUCCGUCCCCCUUCCGCCUUCUCCCUUCUCUCACCCCCACCCUAGCCUCCACCAUCCCCGCACAAAGCGGCUCUAAACCUCAGGCCACAUCUUUUCCAAGGCAAm6ACCCUGUUCAGGCUGGCUCGUAGGCCUGCCGCUUUGAUGGm6AGGAGGUAUUGUAAGCUUUCCAUUUUCUAUAAGAAAAAGGAAAAGUUGAGGGGGGGGCAUUAGUGCUGAUAGCUGUGUGUGUUAGCUUGUAUAUAUAUUUUUAAAAAUCUACCUGUUCCUGACUUAAAACAAAAGGAAAGAAACUACCUUUUUAUAAUGCACAACUGUUGAUGGUAGGCUGUAUAGUUUUUAGUCUGUGUAGUUAAUUUAAUUUGCAGUUUGUGCGGCAGAUUGCUCUGCCAAGAUACUUGAACACUGUGUUUUAUUGUGGUAAUUAUGUUUUGUGAUUCAAACUUCUGUGUACUGGGUGAUGCACCCAUUGUGAUUGUGGAAGAUAGAAUUCAAUYUGAACUCAGGUUGUUUAUGAGGGGAAAAAAACAGUUGCAUAGAGUAUAGCUCUGUAGUGGAAUAUGUCUUCUGUAUAACUAGGCUGUUAACCUAUGAUUGUAAAGUAGCUGUAAGAAUUUCCCAGUGAAAUAAAAAAAAAUUUUAAGUGUUCUCGGGGAUGCAUAGAUUCAUCAUUUUCUCCACCUUAAAAAUGCGGGCAUUUAAGUCUGUCCAUUAUCUAUAUAGUCCUGUCUUGUCUAUUGUAUAUAUAAUCUAUAUGAUUAAAGAAAAUAUGCAUAAUCAGACAAGCUUGAAUAUUGUUUUUGCACCAGACGAACAGUGAGGAAAUUCGGAGCUAUACAUAUGUGCAGAAGGUUACUACCUAGGGUUUAUGCUUAAUUUUAAUUGGAGGAAAUGAAUGCUGAUUGUAACGGAGUUAAUUUUAUUGAUAAUAAAUUAUACACUAUGAAACCGCCAUUGGGCUACUGUAGAUUUGUAUCCUUGAUGAAUCUGGGGUUUCCAUCAGACUGAACUUACACUGUAUAUUUUGCAAUAGUUACCUCAAGGCCUACUGACCAAAUUGUUGUGUUGAGAUGAUAUUUAACUUUUUGCCAAAUAAAAUAUAUUGAUUCUUUUCUA
Sequence (MODOMICS CODE ENCODING)	GCCACCAAGUUGUUACAUGAAAUCUGCAGUUUCAUAAUUUCCGUGGGUCGGGCCGGGCGGGCCAGGCGCUGGGCACGGUGAUGGCCACCACUGGGGCCCUGGGCAACUACUACGUGG2000000006ACUCGUUCCUGCUGGGCGCCGACGCCGCGGAUGAGCUGAGCGUUGGCCGCUAUGCGCCGGGGACCCUGGGCCAGCCUCCCCGGCAGGCGGCGACGCUGGCCGAGCACCCCGACUUCAGCCCGUGCAGCUUCCAGUCCAAGGCGACGGUGUUUGGCGCCUCGUGGAACCCAGUGCACGCGGCGGGCGCCAACGCUGUACCCGCUGCGGUGUACCACCACCAUCACCACCACCCCUACGUGCACCCCCAGGCGCCCGUGGCGGCGGCGGCGCCGGACGGCAGGUACAUGCGCUCCUGGCUGGAGCCCACGCCCGGUGCGCUCUCCUUCGCGGGCUUGCCCUCCAGCCGGCCUUAUGGCAUUAAACCUGAACCGCUGUCGGCCAGAAGGGGUGACUGUCCCACGCUUGACACUCACACUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCC2000000009UCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGCCUUCUCUGAAAACAAUGCUGAGAAUGAGAGCGGCGGAGACAAGCCCCCCAUCGAUCCCAAUAACCCAGCAGCCAACUGGCUUCAUGCGCGCUCCACUCGGAAAAAGCGGUGCCCCUAUACAAAACACCAGACCCUGGAACUGGAGAAAGAGUUUCUGUUCAACAUGUACCUCACCAGGGACCGCAGGUACGAGGUGGCUCGACUGCUCAACCUCACCGAGAGGCAGGUCAAGAUCUGGUUCCAGA2000000006ACCGCAGGAUGAAAAUGAAGAAAAUCAACAAAGACCGAGCAAAAGACGAGUGAUGCCAUUUGGGCUUAUUUAGAAAAAAGGGUAAGCUAGAGAGAAAAAGAAAGA2000000006ACUGUCCGUCCCCCUUCCGCCUUCUCCCUUCUCUCACCCCCACCCUAGCCUCCACCAUCCCCGCACAAAGCGGCUCUAAACCUCAGGCCACAUCUUUUCCAAGGCAA2000000006ACCCUGUUCAGGCUGGCUCGUAGGCCUGCCGCUUUGAUGG2000000006AGGAGGUAUUGUAAGCUUUCCAUUUUCUAUAAGAAAAAGGAAAAGUUGAGGGGGGGGCAUUAGUGCUGAUAGCUGUGUGUGUUAGCUUGUAUAUAUAUUUUUAAAAAUCUACCUGUUCCUGACUUAAAACAAAAGGAAAGAAACUACCUUUUUAUAAUGCACAACUGUUGAUGGUAGGCUGUAUAGUUUUUAGUCUGUGUAGUUAAUUUAAUUUGCAGUUUGUGCGGCAGAUUGCUCUGCCAAGAUACUUGAACACUGUGUUUUAUUGUGGUAAUUAUGUUUUGUGAUUCAAACUUCUGUGUACUGGGUGAUGCACCCAUUGUGAUUGUGGAAGAUAGAAUUCAAU2000000009UUGAACUCAGGUUGUUUAUGAGGGGAAAAAAACAGUUGCAUAGAGUAUAGCUCUGUAGUGGAAUAUGUCUUCUGUAUAACUAGGCUGUUAACCUAUGAUUGUAAAGUAGCUGUAAGAAUUUCCCAGUGAAAUAAAAAAAAAUUUUAAGUGUUCUCGGGGAUGCAUAGAUUCAUCAUUUUCUCCACCUUAAAAAUGCGGGCAUUUAAGUCUGUCCAUUAUCUAUAUAGUCCUGUCUUGUCUAUUGUAUAUAUAAUCUAUAUGAUUAAAGAAAAUAUGCAUAAUCAGACAAGCUUGAAUAUUGUUUUUGCACCAGACGAACAGUGAGGAAAUUCGGAGCUAUACAUAUGUGCAGAAGGUUACUACCUAGGGUUUAUGCUUAAUUUUAAUUGGAGGAAAUGAAUGCUGAUUGUAACGGAGUUAAUUUUAUUGAUAAUAAAUUAUACACUAUGAAACCGCCAUUGGGCUACUGUAGAUUUGUAUCCUUGAUGAAUCUGGGGUUUCCAUCAGACUGAACUUACACUGUAUAUUUUGCAAUAGUUACCUCAAGGCCUACUGACCAAAUUGUUGUGUUGAGAUGAUAUUUAACUUUUUGCCAAAUAAAAUAUAUUGAUUCUUUUCUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	118	566	847	952	1059	1099	1445
Modification Positions	m6A	Y	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	7:27165420:-	7:27164972:-	7:27163655:-	7:27163550:-	7:27163443:-	7:27163403:-	7:27163057:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V 5aTkEfEpX8Xm aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL dA7YoLwHrzgR ZuM5xpZmNuDL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VyCX26p5UBRL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL	BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8