General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000438012
Gene ID:	ENSG00000136243
Gene Name:	NUP42
Sequence (UNICHARACTER ENCODING)	GCCCAGUAACAGGCAUCGAACGGUGCAGACUGAAGACGCCCPCCGUCAGCGACGCCGUCGCAAUGGCCAUUUGUCAAUUCUUCCUUCAAGGCCGGUGCCGCUUUGGAGAUCGGUGCUGGAACGAACAUCCCGGUGCUAGGGGUGCAGGAGGAGGACGGCAGCAACCGCAGCAGCAGCCUUCAGGUAAUAAUAGACGUGGAUGGAAUACAACUAGCCAGAGAUAUUCCAAUGUCAPCCAGCCAUCCAGUUUCUCCAAAUCCACACCAUGGGGGGGCAGCAGAGAUCAAGAAAAGCCAUAUUUCAGUUCUUUUGAUUCUGGAGCUUCAACUAЖCAGGAAGGAAGGCUUUGGAUUGUCUGAGAACCCAUUUGCUUCACUUAGUCCUGAUGAGCAGAAAGAUGAAAAGAAACUUCUGGAAGGAAUUGUAAAAGAUAUGGAGGUUUGGGAAUCAUCAGGGCAGUGGAUGUUUUCUGUUUAUUCACCAGUGAAAAAGAAACCUAAUAUUUCAGGUUUUACЖ#ACAUUUCACCAGAGGAAUUGAGGCUUGAAUACCAUAЖCUUCUUAACCAGCAAUAЖCUUACAGAGUUAUCUAAAUUCUGUCCAACGUUUAAUAAAUCAAUGGAGGAACAGGGUAAAUGAACUGAAAAGUCUAAAUAUAUCAACUAAAGUAGCUUUGAAAUGCCUUUGGAAGAUAUAUACCCACCUGUCUCCAAAGAUCUAUGGUCCCGACUGUGCUCUCUGAUGUAAAGGAUGGAGUAAAUCAAGCAGCACCUGCAUUUGGAUUUGGCAGCAGUCAAGCAGCAACAUUUAUGUCGCCAGGCUUUCCAGUCAAUAЖCAGCAGCAGUGAUAAUGCUCAGAЖCUPUAGUUUUAAAACAAЖCUCUGGAUPUGCUGCUGCCUCUUCUGGAAGCCCUGCUGGUUUUGGGAGUUCCCCAGCAUUUGGAGCUGCAGCCUCUACCAGUUCAGGUAUCUCUACUUCUGCUCCAGCUUUUGGAUUUGGGAAGCCUGAAGUCACAUCGGCUGCAUCAUUUUCAUUCAAAAGCCCUGCAGCUUCCAGUUUUGGAUCACCUGGAUUUUCAGGЖCUUCCAGCUUCCUUGGCAACAGGUCCUGUCAGAGCUCCAGUGGCCCCAGCCUUUGGAGGUGGCAGUUCUGUGGCUGGUUUUGGUAGUCCGGGCUCACAUUCUCACACUGCUUUUUCUAAGCCAPCCAGUGЖCACUUUUGGAAAUAGCAGCAUAUCCACUUCUCUGUCAGCCUCAAGCAGCAUCAUUGCAACAGAUAAUGUGUUAUUCACACCCAGAGAUAAЖCUAЖCAGUAGAAGAЖCUGGAЖCAAUUUCAAUCCAAGAAAUUUACUCUGGGAAAAAUUCCAUUAAAGCCUCCACCUCUGGAЖCUUCUAAAUGUUUAAAAGGGCAAUUUUAAAUACAAAAAAGAAUGAUGUUUAAAAUUGCUUUGAGUGAUUCAUACAGAGAUGUAUAUAUGCAUACAUGUAUAUAUUCAUAAGGAAUAUAAGCUUCCAUCAAUAGUGAUUUUAAAUUUGAUUUUUUUCUUAЖCUCUAAAUAUUUAAGUAAAAAGUAACAAAAACUCUGCAAGCAAGGGAAUUUUUUUGUACUGUAAUUUUGAAUGGAACUGAAAAAUUAUGCACGAAUAAAGUACUUUUCUCAUGCCA
Sequence (SHORT NAMES ENCODING)	GCCCAGUAACAGGCAUCGAACGGUGCAGACUGAAGACGCCCYCCGUCAGCGACGCCGUCGCAAUGGCCAUUUGUCAAUUCUUCCUUCAAGGCCGGUGCCGCUUUGGAGAUCGGUGCUGGAACGAACAUCCCGGUGCUAGGGGUGCAGGAGGAGGACGGCAGCAACCGCAGCAGCAGCCUUCAGGUAAUAAUAGACGUGGAUGGAAUACAACUAGCCAGAGAUAUUCCAAUGUCAYCCAGCCAUCCAGUUUCUCCAAAUCCACACCAUGGGGGGGCAGCAGAGAUCAAGAAAAGCCAUAUUUCAGUUCUUUUGAUUCUGGAGCUUCAACUAm6ACAGGAAGGAAGGCUUUGGAUUGUCUGAGAACCCAUUUGCUUCACUUAGUCCUGAUGAGCAGAAAGAUGAAAAGAAACUUCUGGAAGGAAUUGUAAAAGAUAUGGAGGUUUGGGAAUCAUCAGGGCAGUGGAUGUUUUCUGUUUAUUCACCAGUGAAAAAGAAACCUAAUAUUUCAGGUUUUACm6AGmACAUUUCACCAGAGGAAUUGAGGCUUGAAUACCAUAm6ACUUCUUAACCAGCAAUAm6ACUUACAGAGUUAUCUAAAUUCUGUCCAACGUUUAAUAAAUCAAUGGAGGAACAGGGUAAAUGAACUGAAAAGUCUAAAUAUAUCAACUAAAGUAGCUUUGAAAUGCCUUUGGAAGAUAUAUACCCACCUGUCUCCAAAGAUCUAUGGUCCCGACUGUGCUCUCUGAUGUAAAGGAUGGAGUAAAUCAAGCAGCACCUGCAUUUGGAUUUGGCAGCAGUCAAGCAGCAACAUUUAUGUCGCCAGGCUUUCCAGUCAAUAm6ACAGCAGCAGUGAUAAUGCUCAGAm6ACUYUAGUUUUAAAACAAm6ACUCUGGAUYUGCUGCUGCCUCUUCUGGAAGCCCUGCUGGUUUUGGGAGUUCCCCAGCAUUUGGAGCUGCAGCCUCUACCAGUUCAGGUAUCUCUACUUCUGCUCCAGCUUUUGGAUUUGGGAAGCCUGAAGUCACAUCGGCUGCAUCAUUUUCAUUCAAAAGCCCUGCAGCUUCCAGUUUUGGAUCACCUGGAUUUUCAGGm6ACUUCCAGCUUCCUUGGCAACAGGUCCUGUCAGAGCUCCAGUGGCCCCAGCCUUUGGAGGUGGCAGUUCUGUGGCUGGUUUUGGUAGUCCGGGCUCACAUUCUCACACUGCUUUUUCUAAGCCAYCCAGUGm6ACACUUUUGGAAAUAGCAGCAUAUCCACUUCUCUGUCAGCCUCAAGCAGCAUCAUUGCAACAGAUAAUGUGUUAUUCACACCCAGAGAUAAm6ACUAm6ACAGUAGAAGAm6ACUGGAm6ACAAUUUCAAUCCAAGAAAUUUACUCUGGGAAAAAUUCCAUUAAAGCCUCCACCUCUGGAm6ACUUCUAAAUGUUUAAAAGGGCAAUUUUAAAUACAAAAAAGAAUGAUGUUUAAAAUUGCUUUGAGUGAUUCAUACAGAGAUGUAUAUAUGCAUACAUGUAUAUAUUCAUAAGGAAUAUAAGCUUCCAUCAAUAGUGAUUUUAAAUUUGAUUUUUUUCUUAm6ACUCUAAAUAUUUAAGUAAAAAGUAACAAAAACUCUGCAAGCAAGGGAAUUUUUUUGUACUGUAAUUUUGAAUGGAACUGAAAAAUUAUGCACGAAUAAAGUACUUUUCUCAUGCCA
Sequence (MODOMICS CODE ENCODING)	GCCCAGUAACAGGCAUCGAACGGUGCAGACUGAAGACGCCC2000000009UCCGUCAGCGACGCCGUCGCAAUGGCCAUUUGUCAAUUCUUCCUUCAAGGCCGGUGCCGCUUUGGAGAUCGGUGCUGGAACGAACAUCCCGGUGCUAGGGGUGCAGGAGGAGGACGGCAGCAACCGCAGCAGCAGCCUUCAGGUAAUAAUAGACGUGGAUGGAAUACAACUAGCCAGAGAUAUUCCAAUGUCA2000000009UCCAGCCAUCCAGUUUCUCCAAAUCCACACCAUGGGGGGGCAGCAGAGAUCAAGAAAAGCCAUAUUUCAGUUCUUUUGAUUCUGGAGCUUCAACUA2000000006ACAGGAAGGAAGGCUUUGGAUUGUCUGAGAACCCAUUUGCUUCACUUAGUCCUGAUGAGCAGAAAGAUGAAAAGAAACUUCUGGAAGGAAUUGUAAAAGAUAUGGAGGUUUGGGAAUCAUCAGGGCAGUGGAUGUUUUCUGUUUAUUCACCAGUGAAAAAGAAACCUAAUAUUUCAGGUUUUAC2000000006A2000000090GACAUUUCACCAGAGGAAUUGAGGCUUGAAUACCAUA2000000006ACUUCUUAACCAGCAAUA2000000006ACUUACAGAGUUAUCUAAAUUCUGUCCAACGUUUAAUAAAUCAAUGGAGGAACAGGGUAAAUGAACUGAAAAGUCUAAAUAUAUCAACUAAAGUAGCUUUGAAAUGCCUUUGGAAGAUAUAUACCCACCUGUCUCCAAAGAUCUAUGGUCCCGACUGUGCUCUCUGAUGUAAAGGAUGGAGUAAAUCAAGCAGCACCUGCAUUUGGAUUUGGCAGCAGUCAAGCAGCAACAUUUAUGUCGCCAGGCUUUCCAGUCAAUA2000000006ACAGCAGCAGUGAUAAUGCUCAGA2000000006ACU2000000009UUAGUUUUAAAACAA2000000006ACUCUGGAU2000000009UUGCUGCUGCCUCUUCUGGAAGCCCUGCUGGUUUUGGGAGUUCCCCAGCAUUUGGAGCUGCAGCCUCUACCAGUUCAGGUAUCUCUACUUCUGCUCCAGCUUUUGGAUUUGGGAAGCCUGAAGUCACAUCGGCUGCAUCAUUUUCAUUCAAAAGCCCUGCAGCUUCCAGUUUUGGAUCACCUGGAUUUUCAGG2000000006ACUUCCAGCUUCCUUGGCAACAGGUCCUGUCAGAGCUCCAGUGGCCCCAGCCUUUGGAGGUGGCAGUUCUGUGGCUGGUUUUGGUAGUCCGGGCUCACAUUCUCACACUGCUUUUUCUAAGCCA2000000009UCCAGUG2000000006ACACUUUUGGAAAUAGCAGCAUAUCCACUUCUCUGUCAGCCUCAAGCAGCAUCAUUGCAACAGAUAAUGUGUUAUUCACACCCAGAGAUAA2000000006ACUA2000000006ACAGUAGAAGA2000000006ACUGGA2000000006ACAAUUUCAAUCCAAGAAAUUUACUCUGGGAAAAAUUCCAUUAAAGCCUCCACCUCUGGA2000000006ACUUCUAAAUGUUUAAAAGGGCAAUUUUAAAUACAAAAAAGAAUGAUGUUUAAAAUUGCUUUGAGUGAUUCAUACAGAGAUGUAUAUAUGCAUACAUGUAUAUAUUCAUAAGGAAUAUAAGCUUCCAUCAAUAGUGAUUUUAAAUUUGAUUUUUUUCUUA2000000006ACUCUAAAUAUUUAAGUAAAAAGUAACAAAAACUCUGCAAGCAAGGGAAUUUUUUUGUACUGUAAUUUUGAAUGGAACUGAAAAAUUAUGCACGAAUAAAGUACUUUUCUCAUGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	42	235	331	515	516	553	571	830	854	857	872	881	1074	1198	1205	1296	1300	1311	1317	1377	1537
Modification Positions	Y	Y	m6A	m6A	Gm	m6A	m6A	m6A	m6A	Y	m6A	Y	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	7:23182065:+	7:23185121:+	7:23185217:+	7:23195846:+	7:23195847:+	7:23195884:+	7:23195902:+	7:23200183:+	7:23200207:+	7:23200210:+	7:23200225:+	7:23200234:+	7:23200427:+	7:23200551:+	7:23200558:+	7:23200649:+	7:23200653:+	7:23200664:+	7:23200670:+	7:23200730:+	7:23200890:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx aivdrAsbdKEU msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw BkoLW2CBToyL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8