General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000436336
Gene ID:	ENSG00000160917
Gene Name:	CPSF4
Sequence (UNICHARACTER ENCODING)	GCGCGGGCUCCGGGCGCUCCCGGCAUCCCUCGGGCGGCGGCGGCGGCGGCGGCGAGGCGAAGCGAAGGAGGAGUGUGUGCGGCGGGGCCGGCGGCGGGUAAAGGCGAGAAGGCUGCAGGAGACCGAGGGGGAGCCGGGCCGGUGGGGCCGCCGCCGCCGCCAUGCAGGAAAUCAUCGCCAGCGUGGACCACAUCAAGUUUGACUUGGAGAUCGCGGUGGAGCAGCAGCUGGGGGCGCAGCCGCUGCCCUUCCCCGGCAUGGACAAGUCGGGCGCUGCUGUCUGUGAAUUCUUUUUGAAAGCUGCCUGCGGCAAAGGGGGCAUGUGUCCGUUUCGCCACAUCAGUGGUGAGAAGACAGUUGUGUGCAAACACUGGCUGCGUGGCCUAUGCAAGAAAGGGGACCAGUGUGAGUUCCUGCAUGAGUAUGACAUGACCAAGAUGCCCGAGUGCUACUUCUACUCCAAGUUCGGGGAGUGCAGCAACAAGGAAUGUCCCUUCCUGCACAUCGACCCCGAGUCCAAGAUCAAGGACUGUCCUUGGUAUGACCGUGGCUUCUGCAAGCACGGUCCCCUCUGCAGGCACCGGCACACACGGAGAGUCAUCUGUGUGAAUUACCUCGUGGGAUUCUGCCCGGAGGGGCCCUCGUGUAAAUUCAUGCACCCUCGAUPUGAACUGCCCAUGGGAACCACCGAGCAGCCCCCACUGCCGCAGCAGACACAGCCUCCAGCAAAGCAGAGAACCCCGCAGGUCAUCGGGGUCAUGCAGAGUCAAAACAGCAGCGCGGGCAACCGGGGACCCCGGCCACUGGAGCAGGUCACCUGUUACAAGUGUGGCGAGAAAGGACACUACGCCAACAGAUGCACCAAAGGGCACUUGGCCUUUCUCAGUGGЖCAGUGACAGCAGCUGGAGCCAGCUCCGAGCAGCCCGGGGGCCCCGCUGUUGGGAGUGUGCAUUUAACUGUUUCAUGCGCUUGUUGGCGCGACUGUGGCUCGAGCUGGCCCGCAGЖCACGUGGGUUUCAUCACUCUGAGGGGCCACGUCUGUUAGUUUCCUAUCAUUUUGCCUUAGUAUUUUUUGAAAAAGGGACAUGUGUCCUGUGGGUCCCUGCAGUCGACAUCAUGUUUGGCUGGGCAUCGAUGCCUCCUUUCUGGGACUCCCGGCACAACUCCCCUCAPCCAGGGAGGGAGGCAGCUGCUGGGGAGGGGCUUGGCUAGGUAGUUCUGUGUGGCGGUGGUCAUUCCCCUCAUUAAЖCACCAGUUCUUGGUGACGCCAGGGGCUGGUAGGUCAUUCAAAGCUGUGGCCAGCUCACGCCUGCUUCCPCCCUCCCUGCCCUGCUGAAUCCUAAAGCUGUGCCUAUAUCUGUGAUUUGAAUGAGGGAGCCCUUUGGGGCAAAUUCAGGUGCCCCCAUUGCCUCAGGCUGGCCCUGGUCCCAGGUGGCAGCGGUUGAGGAGGGGUACAGGGCUCUCAAGCCUGAGGUUUUCUUCUCUGGGCUUAAUUUUCUCUUGGGGUACGUGCCUGACAGUGUUUAAGGUGUCCGUUGAACUGGAGUUGCAGACUUUUAAAUAGAUGACCCCUUCAGAUCAUCUGUGCCUACCPCCUGCCCAUCAGGCGUCUACACUGUCACUCAGACACCUGUGGCAUGUGGAGGAGACUGCCCUGUCCUGAGCCUGGAAAAUGUGAAACUGUCUCCUGCAACCUGCUGGGCAUGUGGGCCUGGCUGUGUUCAAUUGCAAGAACAAUU
Sequence (SHORT NAMES ENCODING)	GCGCGGGCUCCGGGCGCUCCCGGCAUCCCUCGGGCGGCGGCGGCGGCGGCGGCGAGGCGAAGCGAAGGAGGAGUGUGUGCGGCGGGGCCGGCGGCGGGUAAAGGCGAGAAGGCUGCAGGAGACCGAGGGGGAGCCGGGCCGGUGGGGCCGCCGCCGCCGCCAUGCAGGAAAUCAUCGCCAGCGUGGACCACAUCAAGUUUGACUUGGAGAUCGCGGUGGAGCAGCAGCUGGGGGCGCAGCCGCUGCCCUUCCCCGGCAUGGACAAGUCGGGCGCUGCUGUCUGUGAAUUCUUUUUGAAAGCUGCCUGCGGCAAAGGGGGCAUGUGUCCGUUUCGCCACAUCAGUGGUGAGAAGACAGUUGUGUGCAAACACUGGCUGCGUGGCCUAUGCAAGAAAGGGGACCAGUGUGAGUUCCUGCAUGAGUAUGACAUGACCAAGAUGCCCGAGUGCUACUUCUACUCCAAGUUCGGGGAGUGCAGCAACAAGGAAUGUCCCUUCCUGCACAUCGACCCCGAGUCCAAGAUCAAGGACUGUCCUUGGUAUGACCGUGGCUUCUGCAAGCACGGUCCCCUCUGCAGGCACCGGCACACACGGAGAGUCAUCUGUGUGAAUUACCUCGUGGGAUUCUGCCCGGAGGGGCCCUCGUGUAAAUUCAUGCACCCUCGAUYUGAACUGCCCAUGGGAACCACCGAGCAGCCCCCACUGCCGCAGCAGACACAGCCUCCAGCAAAGCAGAGAACCCCGCAGGUCAUCGGGGUCAUGCAGAGUCAAAACAGCAGCGCGGGCAACCGGGGACCCCGGCCACUGGAGCAGGUCACCUGUUACAAGUGUGGCGAGAAAGGACACUACGCCAACAGAUGCACCAAAGGGCACUUGGCCUUUCUCAGUGGm6ACAGUGACAGCAGCUGGAGCCAGCUCCGAGCAGCCCGGGGGCCCCGCUGUUGGGAGUGUGCAUUUAACUGUUUCAUGCGCUUGUUGGCGCGACUGUGGCUCGAGCUGGCCCGCAGm6ACACGUGGGUUUCAUCACUCUGAGGGGCCACGUCUGUUAGUUUCCUAUCAUUUUGCCUUAGUAUUUUUUGAAAAAGGGACAUGUGUCCUGUGGGUCCCUGCAGUCGACAUCAUGUUUGGCUGGGCAUCGAUGCCUCCUUUCUGGGACUCCCGGCACAACUCCCCUCAYCCAGGGAGGGAGGCAGCUGCUGGGGAGGGGCUUGGCUAGGUAGUUCUGUGUGGCGGUGGUCAUUCCCCUCAUUAAm6ACACCAGUUCUUGGUGACGCCAGGGGCUGGUAGGUCAUUCAAAGCUGUGGCCAGCUCACGCCUGCUUCCYCCCUCCCUGCCCUGCUGAAUCCUAAAGCUGUGCCUAUAUCUGUGAUUUGAAUGAGGGAGCCCUUUGGGGCAAAUUCAGGUGCCCCCAUUGCCUCAGGCUGGCCCUGGUCCCAGGUGGCAGCGGUUGAGGAGGGGUACAGGGCUCUCAAGCCUGAGGUUUUCUUCUCUGGGCUUAAUUUUCUCUUGGGGUACGUGCCUGACAGUGUUUAAGGUGUCCGUUGAACUGGAGUUGCAGACUUUUAAAUAGAUGACCCCUUCAGAUCAUCUGUGCCUACCYCCUGCCCAUCAGGCGUCUACACUGUCACUCAGACACCUGUGGCAUGUGGAGGAGACUGCCCUGUCCUGAGCCUGGAAAAUGUGAAACUGUCUCCUGCAACCUGCUGGGCAUGUGGGCCUGGCUGUGUUCAAUUGCAAGAACAAUU
Sequence (MODOMICS CODE ENCODING)	GCGCGGGCUCCGGGCGCUCCCGGCAUCCCUCGGGCGGCGGCGGCGGCGGCGGCGAGGCGAAGCGAAGGAGGAGUGUGUGCGGCGGGGCCGGCGGCGGGUAAAGGCGAGAAGGCUGCAGGAGACCGAGGGGGAGCCGGGCCGGUGGGGCCGCCGCCGCCGCCAUGCAGGAAAUCAUCGCCAGCGUGGACCACAUCAAGUUUGACUUGGAGAUCGCGGUGGAGCAGCAGCUGGGGGCGCAGCCGCUGCCCUUCCCCGGCAUGGACAAGUCGGGCGCUGCUGUCUGUGAAUUCUUUUUGAAAGCUGCCUGCGGCAAAGGGGGCAUGUGUCCGUUUCGCCACAUCAGUGGUGAGAAGACAGUUGUGUGCAAACACUGGCUGCGUGGCCUAUGCAAGAAAGGGGACCAGUGUGAGUUCCUGCAUGAGUAUGACAUGACCAAGAUGCCCGAGUGCUACUUCUACUCCAAGUUCGGGGAGUGCAGCAACAAGGAAUGUCCCUUCCUGCACAUCGACCCCGAGUCCAAGAUCAAGGACUGUCCUUGGUAUGACCGUGGCUUCUGCAAGCACGGUCCCCUCUGCAGGCACCGGCACACACGGAGAGUCAUCUGUGUGAAUUACCUCGUGGGAUUCUGCCCGGAGGGGCCCUCGUGUAAAUUCAUGCACCCUCGAU2000000009UUGAACUGCCCAUGGGAACCACCGAGCAGCCCCCACUGCCGCAGCAGACACAGCCUCCAGCAAAGCAGAGAACCCCGCAGGUCAUCGGGGUCAUGCAGAGUCAAAACAGCAGCGCGGGCAACCGGGGACCCCGGCCACUGGAGCAGGUCACCUGUUACAAGUGUGGCGAGAAAGGACACUACGCCAACAGAUGCACCAAAGGGCACUUGGCCUUUCUCAGUGG2000000006ACAGUGACAGCAGCUGGAGCCAGCUCCGAGCAGCCCGGGGGCCCCGCUGUUGGGAGUGUGCAUUUAACUGUUUCAUGCGCUUGUUGGCGCGACUGUGGCUCGAGCUGGCCCGCAG2000000006ACACGUGGGUUUCAUCACUCUGAGGGGCCACGUCUGUUAGUUUCCUAUCAUUUUGCCUUAGUAUUUUUUGAAAAAGGGACAUGUGUCCUGUGGGUCCCUGCAGUCGACAUCAUGUUUGGCUGGGCAUCGAUGCCUCCUUUCUGGGACUCCCGGCACAACUCCCCUCA2000000009UCCAGGGAGGGAGGCAGCUGCUGGGGAGGGGCUUGGCUAGGUAGUUCUGUGUGGCGGUGGUCAUUCCCCUCAUUAA2000000006ACACCAGUUCUUGGUGACGCCAGGGGCUGGUAGGUCAUUCAAAGCUGUGGCCAGCUCACGCCUGCUUCC2000000009UCCCUCCCUGCCCUGCUGAAUCCUAAAGCUGUGCCUAUAUCUGUGAUUUGAAUGAGGGAGCCCUUUGGGGCAAAUUCAGGUGCCCCCAUUGCCUCAGGCUGGCCCUGGUCCCAGGUGGCAGCGGUUGAGGAGGGGUACAGGGCUCUCAAGCCUGAGGUUUUCUUCUCUGGGCUUAAUUUUCUCUUGGGGUACGUGCCUGACAGUGUUUAAGGUGUCCGUUGAACUGGAGUUGCAGACUUUUAAAUAGAUGACCCCUUCAGAUCAUCUGUGCCUACC2000000009UCCUGCCCAUCAGGCGUCUACACUGUCACUCAGACACCUGUGGCAUGUGGAGGAGACUGCCCUGUCCUGAGCCUGGAAAAUGUGAAACUGUCUCCUGCAACCUGCUGGGCAUGUGGGCCUGGCUGUGUUCAAUUGCAAGAACAAUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	667	890	1005	1172	1248	1317	1593
Modification Positions	Y	m6A	m6A	Y	m6A	Y	Y
Genomic Coordinates	7:99452376:+	7:99456494:+	7:99456609:+	7:99456776:+	7:99456852:+	7:99456921:+	7:99457197:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se nfCHyrYzE6fB BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8