Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000418337
Gene ID: ENSG00000106617
Gene Name: PRKAG2
Sequence (UNICHARACTER ENCODING) GCGGCCGCGCCACCUGCGGCGGCGGCGGCGGCCUCGGGCGGGUGGGGGCAGCGCUCCCGCUCCGCCCCCGGCCCCCGCUGCCCGCGUCCCCUGCCAGGCCCCUCCUCCCGGCGGCGCGGCAGAGCCAGGCCCCAGCGCUCGGCCGGCCGCGAGCCCGCCGGCCGGGGACGAGCGUCGCAGCUCAUGCUGAUCGCUGUCCUCCUCCUCCCCCUCAGGCGGCGCUGGCGGCGGCCCUGGGACCCGCGGAAGCCGGCAUGCUGGAGAAGCUGGAGUUCGAGGACGAAGCAGUAGAAGACUCAGAAAGUGGUGUUUACAUGCGAUUCAUGAGGUCACACAAGUGUUAUGACAUCGUUCCAACCAGUUCAAAGCUUGUUGUCUUUGAUACUACAUUACAAGUUAAAAAGGCCUUCUUUGCUUUGGUAGCCAACGGUGUCCGAGCAGCGCCACUGUGGGAGAGUAAAAAACAAAGUUUUGUAGGAAUGCUAACAAUUACAGAUUUCAUAAAUAUACUACAUAGAUACUAUAAAUCACCUAUGGUACAGAUUUAUGAAUUAGAGGAACAUAAAAUUGAAACAUGGAGGGAGCUPUAUUUACAAGAAACAUUUAAGCCUPUAGUGAAUAUAUCUCCAGAUGCAAGCCUCUUCGAUGCUGUAUACUCCUUGAUCAAAAAUAAAAUCCACAGAUUGCCCGUUAUUGACCCUAUCAGUGGGAAUGCACUPUAUAUACUUACCCACAAAAGAAUCCUCAAGUUCCUCCAGCUUUUUAUGUCUGAUAUGCCAAAGCCUGCCUUCAUGAAGCAGAACCUGGAUGAGCUUGGAAUAGGAACGUACCACAACAUUGCCUUCAUACAPCCAGACACUCCCAUCAUCAAAGCCUUGAACAUAUUUGUGGAAAGACGAAUAUCAGCUCUGCCUGUUGUGGAUGAGUCAGGAAAAGUUGUAGAUAUUUAUUCCAAAUUUGAUGUAAUUAAUCUUGCUGCUGAGAAAACAUACAAUAACCUAGAUAUCACGGUGACCCAGGCCCUUCAGCACCGUUCACAGUAUUUUGAAGGUGUUGUGAAGUGCAAUAAGCUGGAAAUACUGGAGACCAUCGUGGACAGAAUAGUAAGAGCUGAGGUCCAUCGGCUGGUGGUGGUAAAUGAAGCAGAUAGUAUUGUGGGUAUUAUUUCCCUGUCGGACAUUCUGCAAGCCCUGAUCCUCACACCAGCAGGUGCCAAACAAAAGGAGACAGAAACGGAGUGACCGCCGUGAAUGUAGACGCCCUAGGAGGAGAACUUGAACAAAGUCUCUGGGUCACGUUUUGCCUCAUGAЖCACUGGCUGCAAGUGGUUAAGAAUGUAUAUCAGGGUUUAACAAUAGGUAUUUCUUCCAGUGAUGUUGAAAUUAAGCUUAAAAAAGAAAGAUUUUAUGUGCUUGAAGAUUCAGGCUUGCAUUAAAAGЖCUGUUUUCAGACCUUUGUCUGAAGGAUUUUAAAUGCUGUAUGUCAUUAAAGUGCACUGUGUCCUGAAGUUUUCAUUAUUUUUCAUUUCAAAGAAUUCACUGGUAUGGAЖCAGGUGAUGUGGCAUAAGGUGAGUGCACGGUAUGUUCAGAUCACAGUGCCUUAUGUCCGAAUACAGCAAUAUGUCACCGCCGCAGCCGGGGCGCACGCGUGUGAAACAACACCGAGCUUGAAUGUGGAAGUCUUUGAACCUUUUACCAAAUCAGUUUGUUUUCUPUAGAUUUGUCAAAAAGUUGUAAUUUGAAUAUAAAUAAUUACUPUAAAAUUGUAAUGACACUUUUACACGUAAGUGUUUUGUUCUGGGCUACCGUGUCAACGAGGCUGCUPUACAACAGCUPUAUUUAUUUUUACUUUCAUGCAAUUUUUUUACACAUCUUUUGGUGGAGUAAЖCUUCACCACAPCCAUGAAUAAACUCUCAGUUAUUUUGAAAUGGCAAAUUUCUCAUUAUUUAAGUUUGGAUCUGGAAAGGЖCAUGACUUCUGAAAUAGCCGCUGCUGGGUUUUAAAAGCUGAGGUCUCUCAAAGUGUGGAGGAGACGUUGCCGUCAGGCGGGAGCCAAGUGCCGGGAAGAUGUCUAUUUUUUUUCUUGUGUAUUGAAAUGUAAAAUCAUGAUGUUUGUUAUGACUGCUGAUGCGAUUGUUUUUGUAAAUUUUAUUGUGGCAUAUACAGUAUUGUCAUACAGUUGAAGAGAAACAAUGUUUCCUAAUGUAAGUGCUCUGAAAAUGUUGACACUGUAUAUAUAUAUAUGAGGAUAGUUUGUUUUUUUUUUGUUUUGGGUUUUUUUUUUUCAGAUUGAAAAAUUAAAAUAGAUCCUACUAUCUACCA
Sequence (SHORT NAMES ENCODING) GCGGCCGCGCCACCUGCGGCGGCGGCGGCGGCCUCGGGCGGGUGGGGGCAGCGCUCCCGCUCCGCCCCCGGCCCCCGCUGCCCGCGUCCCCUGCCAGGCCCCUCCUCCCGGCGGCGCGGCAGAGCCAGGCCCCAGCGCUCGGCCGGCCGCGAGCCCGCCGGCCGGGGACGAGCGUCGCAGCUCAUGCUGAUCGCUGUCCUCCUCCUCCCCCUCAGGCGGCGCUGGCGGCGGCCCUGGGACCCGCGGAAGCCGGCAUGCUGGAGAAGCUGGAGUUCGAGGACGAAGCAGUAGAAGACUCAGAAAGUGGUGUUUACAUGCGAUUCAUGAGGUCACACAAGUGUUAUGACAUCGUUCCAACCAGUUCAAAGCUUGUUGUCUUUGAUACUACAUUACAAGUUAAAAAGGCCUUCUUUGCUUUGGUAGCCAACGGUGUCCGAGCAGCGCCACUGUGGGAGAGUAAAAAACAAAGUUUUGUAGGAAUGCUAACAAUUACAGAUUUCAUAAAUAUACUACAUAGAUACUAUAAAUCACCUAUGGUACAGAUUUAUGAAUUAGAGGAACAUAAAAUUGAAACAUGGAGGGAGCUYUAUUUACAAGAAACAUUUAAGCCUYUAGUGAAUAUAUCUCCAGAUGCAAGCCUCUUCGAUGCUGUAUACUCCUUGAUCAAAAAUAAAAUCCACAGAUUGCCCGUUAUUGACCCUAUCAGUGGGAAUGCACUYUAUAUACUUACCCACAAAAGAAUCCUCAAGUUCCUCCAGCUUUUUAUGUCUGAUAUGCCAAAGCCUGCCUUCAUGAAGCAGAACCUGGAUGAGCUUGGAAUAGGAACGUACCACAACAUUGCCUUCAUACAYCCAGACACUCCCAUCAUCAAAGCCUUGAACAUAUUUGUGGAAAGACGAAUAUCAGCUCUGCCUGUUGUGGAUGAGUCAGGAAAAGUUGUAGAUAUUUAUUCCAAAUUUGAUGUAAUUAAUCUUGCUGCUGAGAAAACAUACAAUAACCUAGAUAUCACGGUGACCCAGGCCCUUCAGCACCGUUCACAGUAUUUUGAAGGUGUUGUGAAGUGCAAUAAGCUGGAAAUACUGGAGACCAUCGUGGACAGAAUAGUAAGAGCUGAGGUCCAUCGGCUGGUGGUGGUAAAUGAAGCAGAUAGUAUUGUGGGUAUUAUUUCCCUGUCGGACAUUCUGCAAGCCCUGAUCCUCACACCAGCAGGUGCCAAACAAAAGGAGACAGAAACGGAGUGACCGCCGUGAAUGUAGACGCCCUAGGAGGAGAACUUGAACAAAGUCUCUGGGUCACGUUUUGCCUCAUGAm6ACACUGGCUGCAAGUGGUUAAGAAUGUAUAUCAGGGUUUAACAAUAGGUAUUUCUUCCAGUGAUGUUGAAAUUAAGCUUAAAAAAGAAAGAUUUUAUGUGCUUGAAGAUUCAGGCUUGCAUUAAAAGm6ACUGUUUUCAGACCUUUGUCUGAAGGAUUUUAAAUGCUGUAUGUCAUUAAAGUGCACUGUGUCCUGAAGUUUUCAUUAUUUUUCAUUUCAAAGAAUUCACUGGUAUGGAm6ACAGGUGAUGUGGCAUAAGGUGAGUGCACGGUAUGUUCAGAUCACAGUGCCUUAUGUCCGAAUACAGCAAUAUGUCACCGCCGCAGCCGGGGCGCACGCGUGUGAAACAACACCGAGCUUGAAUGUGGAAGUCUUUGAACCUUUUACCAAAUCAGUUUGUUUUCUYUAGAUUUGUCAAAAAGUUGUAAUUUGAAUAUAAAUAAUUACUYUAAAAUUGUAAUGACACUUUUACACGUAAGUGUUUUGUUCUGGGCUACCGUGUCAACGAGGCUGCUYUACAACAGCUYUAUUUAUUUUUACUUUCAUGCAAUUUUUUUACACAUCUUUUGGUGGAGUAAm6ACUUCACCACAYCCAUGAAUAAACUCUCAGUUAUUUUGAAAUGGCAAAUUUCUCAUUAUUUAAGUUUGGAUCUGGAAAGGm6ACAUGACUUCUGAAAUAGCCGCUGCUGGGUUUUAAAAGCUGAGGUCUCUCAAAGUGUGGAGGAGACGUUGCCGUCAGGCGGGAGCCAAGUGCCGGGAAGAUGUCUAUUUUUUUUCUUGUGUAUUGAAAUGUAAAAUCAUGAUGUUUGUUAUGACUGCUGAUGCGAUUGUUUUUGUAAAUUUUAUUGUGGCAUAUACAGUAUUGUCAUACAGUUGAAGAGAAACAAUGUUUCCUAAUGUAAGUGCUCUGAAAAUGUUGACACUGUAUAUAUAUAUAUGAGGAUAGUUUGUUUUUUUUUUGUUUUGGGUUUUUUUUUUUCAGAUUGAAAAAUUAAAAUAGAUCCUACUAUCUACCA
Sequence (MODOMICS CODE ENCODING) GCGGCCGCGCCACCUGCGGCGGCGGCGGCGGCCUCGGGCGGGUGGGGGCAGCGCUCCCGCUCCGCCCCCGGCCCCCGCUGCCCGCGUCCCCUGCCAGGCCCCUCCUCCCGGCGGCGCGGCAGAGCCAGGCCCCAGCGCUCGGCCGGCCGCGAGCCCGCCGGCCGGGGACGAGCGUCGCAGCUCAUGCUGAUCGCUGUCCUCCUCCUCCCCCUCAGGCGGCGCUGGCGGCGGCCCUGGGACCCGCGGAAGCCGGCAUGCUGGAGAAGCUGGAGUUCGAGGACGAAGCAGUAGAAGACUCAGAAAGUGGUGUUUACAUGCGAUUCAUGAGGUCACACAAGUGUUAUGACAUCGUUCCAACCAGUUCAAAGCUUGUUGUCUUUGAUACUACAUUACAAGUUAAAAAGGCCUUCUUUGCUUUGGUAGCCAACGGUGUCCGAGCAGCGCCACUGUGGGAGAGUAAAAAACAAAGUUUUGUAGGAAUGCUAACAAUUACAGAUUUCAUAAAUAUACUACAUAGAUACUAUAAAUCACCUAUGGUACAGAUUUAUGAAUUAGAGGAACAUAAAAUUGAAACAUGGAGGGAGCU2000000009UUAUUUACAAGAAACAUUUAAGCCU2000000009UUAGUGAAUAUAUCUCCAGAUGCAAGCCUCUUCGAUGCUGUAUACUCCUUGAUCAAAAAUAAAAUCCACAGAUUGCCCGUUAUUGACCCUAUCAGUGGGAAUGCACU2000000009UUAUAUACUUACCCACAAAAGAAUCCUCAAGUUCCUCCAGCUUUUUAUGUCUGAUAUGCCAAAGCCUGCCUUCAUGAAGCAGAACCUGGAUGAGCUUGGAAUAGGAACGUACCACAACAUUGCCUUCAUACA2000000009UCCAGACACUCCCAUCAUCAAAGCCUUGAACAUAUUUGUGGAAAGACGAAUAUCAGCUCUGCCUGUUGUGGAUGAGUCAGGAAAAGUUGUAGAUAUUUAUUCCAAAUUUGAUGUAAUUAAUCUUGCUGCUGAGAAAACAUACAAUAACCUAGAUAUCACGGUGACCCAGGCCCUUCAGCACCGUUCACAGUAUUUUGAAGGUGUUGUGAAGUGCAAUAAGCUGGAAAUACUGGAGACCAUCGUGGACAGAAUAGUAAGAGCUGAGGUCCAUCGGCUGGUGGUGGUAAAUGAAGCAGAUAGUAUUGUGGGUAUUAUUUCCCUGUCGGACAUUCUGCAAGCCCUGAUCCUCACACCAGCAGGUGCCAAACAAAAGGAGACAGAAACGGAGUGACCGCCGUGAAUGUAGACGCCCUAGGAGGAGAACUUGAACAAAGUCUCUGGGUCACGUUUUGCCUCAUGA2000000006ACACUGGCUGCAAGUGGUUAAGAAUGUAUAUCAGGGUUUAACAAUAGGUAUUUCUUCCAGUGAUGUUGAAAUUAAGCUUAAAAAAGAAAGAUUUUAUGUGCUUGAAGAUUCAGGCUUGCAUUAAAAG2000000006ACUGUUUUCAGACCUUUGUCUGAAGGAUUUUAAAUGCUGUAUGUCAUUAAAGUGCACUGUGUCCUGAAGUUUUCAUUAUUUUUCAUUUCAAAGAAUUCACUGGUAUGGA2000000006ACAGGUGAUGUGGCAUAAGGUGAGUGCACGGUAUGUUCAGAUCACAGUGCCUUAUGUCCGAAUACAGCAAUAUGUCACCGCCGCAGCCGGGGCGCACGCGUGUGAAACAACACCGAGCUUGAAUGUGGAAGUCUUUGAACCUUUUACCAAAUCAGUUUGUUUUCU2000000009UUAGAUUUGUCAAAAAGUUGUAAUUUGAAUAUAAAUAAUUACU2000000009UUAAAAUUGUAAUGACACUUUUACACGUAAGUGUUUUGUUCUGGGCUACCGUGUCAACGAGGCUGCU2000000009UUACAACAGCU2000000009UUAUUUAUUUUUACUUUCAUGCAAUUUUUUUACACAUCUUUUGGUGGAGUAA2000000006ACUUCACCACA2000000009UCCAUGAAUAAACUCUCAGUUAUUUUGAAAUGGCAAAUUUCUCAUUAUUUAAGUUUGGAUCUGGAAAGG2000000006ACAUGACUUCUGAAAUAGCCGCUGCUGGGUUUUAAAAGCUGAGGUCUCUCAAAGUGUGGAGGAGACGUUGCCGUCAGGCGGGAGCCAAGUGCCGGGAAGAUGUCUAUUUUUUUUCUUGUGUAUUGAAAUGUAAAAUCAUGAUGUUUGUUAUGACUGCUGAUGCGAUUGUUUUUGUAAAUUUUAUUGUGGCAUAUACAGUAUUGUCAUACAGUUGAAGAGAAACAAUGUUUCCUAAUGUAAGUGCUCUGAAAAUGUUGACACUGUAUAUAUAUAUAUGAGGAUAGUUUGUUUUUUUUUUGUUUUGGGUUUUUUUUUUUCAGAUUGAAAAAUUAAAAUAGAUCCUACUAUCUACCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 587 612 719 851 1311 1438 1547 1712 1755 1822 1833 1885 1896 1965
Modification Positions Y Y Y Y m6A m6A m6A Y Y Y Y m6A Y m6A
Genomic Coordinates 7:151570221:- 7:151570196:- 7:151568761:- 7:151565799:- 7:151557131:- 7:151557004:- 7:151556895:- 7:151556730:- 7:151556687:- 7:151556620:- 7:151556609:- 7:151556557:- 7:151556546:- 7:151556477:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
VyCX26p5UBRL
WiQcrNTGZHPT
Lny8GcCeVGc9
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
8cMbzB4aD5Se
BkoLW2CBToyL
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8