General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000331803
Gene ID:	ENSG00000183696
Gene Name:	UPP1
Sequence (UNICHARACTER ENCODING)	GCGGGAACUCCCAGGAUCAGGAAGGUCCCAGAGAAACUCCCCAGGGGGGAAGCCGAGGCCGUCCAGAGAGAUCCAGGGUACACACAGUGACAGUGCCAGCUCCACAUUCCCGACCACCGGGCCAGGGCUGGUUCCACGCUGUCAUUUCUCUCCGCUGGCCCCAGCCGCGGGGCCACCGCCAGACAGACAGACCGGGGAUCCUGCCUGGCGGCGUGACCUUGGGUUAGUCCUAGAGCCGCUUCUAGCCCGGUUUCCUCCGCCCCAGGUUAGGACCACGUGGGGCGGGGCCGCUCGCAGACUCCAUAUGAGAUUCACCUCGCAGGUGGUUCCCUCAUUCGAGUGCUCCGGCGCACAGACCCGCGCCCCGCCGUCUGCGAGCCUCCCGAGAGCCGUCCCUUCGUCCGGCCCUGGAGCAUUGCGUUUGUCGCCGGUGUCGCAGUGCGAGGAUGGCGCCGCGGGUGUAGCGGCUCUCUGCGCAGGCCGAGUGGGCUUGGUGAGGUGACUCGCGGUCGCGGGUGACUCGCCGGCAGGACACUGCCUGGAACGCCUGGAGCGCCUCCCACUGCAGACGUCUGUCCGCCUCCAGCCGCUCUCCUCUGACGGGUCCUGCCUCAGUUGGCGGAAUGGCGGCCACGGGAGCCAAUGCAGAGAAAGCUGAAAGUCACAAUGAUUGCCCCGUCAGACUUUUAAAUCCAAACAUAGCAAAAAUGAAAGAAGAUAUUCUCUAUCAUUUCAAUCUCACCACUAGCAGACACAAUUUCCCAGCCUUGUUUGGAGAUGUGAAGUUUGUGUGUGUUGGUGGAAGCCCCUCCCGGAUGAAAGCCUUCAUCAGGUGCGUUGGUGCAGAGCUGGGCCUUGACUGCCCAGGUAGAGACUAUCCCAACAUCUGUGCGGGAACUGACCGCUAUGCCAUGUAUAAAGUAGGACCGGUGCUGUCUGUCAGUCAUGGUAUGGGCAUUCCUUCUAUCUCAAUCAUGUUGCAUGAGCUCAUAAAGCUGCUGUACUAUGCCCGGUGCUCCAACGUCACUAUCAPCCGCAUUGGCACUUCUGGUGGGAUAGGUCUGGAGCCCGGCACUGUGGUCAPAЖCAGAGCAGGCAGUGGAUACCUGCUUCAAGGCAGAGUUUGAGCAGAUUGUCCUGGGGAAGCGGGUCAPCCGGAAAACGGACCUUAЖCAAGAAGCUGGUGCAGGAGCUGUUGCUGUGUUCUGCAGAGCUGAGCGAGUUCACCACAGUGGUGGGGAACACCAUGUGCACCUUGGACUUCUAUGAAGGGCAAGGCCGUCUGGAUGGGGCUCUCUGCUCCUACACGGAGAAGGACAAGCAGGCGUAUCUGGAGGCAGCCUAUGCAGCCGGCGUCCGCAAUAUCGAGAUGGAGUCCUCGGUGUUUGCCGCCAUGUGCAGCGCCUGCGGCCUCCAAGCGGCCGUGGUGUGUGUCACCCPCCUGAЖCCGCCUGGAAGGGGACCAGAUCAGCAGCCCUCGCAAUGUGCUCAGCGAGUACCAGCAGAGGCCGCAGCGGCUGGUGAGCUACUUCAUCAAGAAGAAACUGAGCAAGGCCUGAGCGCUGCCCUGCACCPCCGCAGACCUGCUGUGAUGACUUGCCAUUAAAAGCAUUGUCCAAAAUCCCCUGUUGUGUGGACUUUGAGCACACUUUACACAAGAAUCUAGAAAAUCAGAUCGCGAUUAAGAGACAGAGAAUCUUGGAUUAACCGCAUGGGAGAUGUUCUUCCUUUUGAAGUUUCAUUGGAGCAUUUUCAAUGAUGUUAGCCUGAUUUGGGGUUUCUUCAAGAACAUUCUACCAAAUUUUUGUACUAUUUCUAGGGAAAUUUUUCAGACUUUAAAAUUCUAAUGGUAGUCAGAUUUCAUGUCACUAAACAAGAAAUCUGACAAUAGUGCCAGGAAACUAAUUUCCUGAUACAUUAAAAAAAUUCCAUGCA
Sequence (SHORT NAMES ENCODING)	GCGGGAACUCCCAGGAUCAGGAAGGUCCCAGAGAAACUCCCCAGGGGGGAAGCCGAGGCCGUCCAGAGAGAUCCAGGGUACACACAGUGACAGUGCCAGCUCCACAUUCCCGACCACCGGGCCAGGGCUGGUUCCACGCUGUCAUUUCUCUCCGCUGGCCCCAGCCGCGGGGCCACCGCCAGACAGACAGACCGGGGAUCCUGCCUGGCGGCGUGACCUUGGGUUAGUCCUAGAGCCGCUUCUAGCCCGGUUUCCUCCGCCCCAGGUUAGGACCACGUGGGGCGGGGCCGCUCGCAGACUCCAUAUGAGAUUCACCUCGCAGGUGGUUCCCUCAUUCGAGUGCUCCGGCGCACAGACCCGCGCCCCGCCGUCUGCGAGCCUCCCGAGAGCCGUCCCUUCGUCCGGCCCUGGAGCAUUGCGUUUGUCGCCGGUGUCGCAGUGCGAGGAUGGCGCCGCGGGUGUAGCGGCUCUCUGCGCAGGCCGAGUGGGCUUGGUGAGGUGACUCGCGGUCGCGGGUGACUCGCCGGCAGGACACUGCCUGGAACGCCUGGAGCGCCUCCCACUGCAGACGUCUGUCCGCCUCCAGCCGCUCUCCUCUGACGGGUCCUGCCUCAGUUGGCGGAAUGGCGGCCACGGGAGCCAAUGCAGAGAAAGCUGAAAGUCACAAUGAUUGCCCCGUCAGACUUUUAAAUCCAAACAUAGCAAAAAUGAAAGAAGAUAUUCUCUAUCAUUUCAAUCUCACCACUAGCAGACACAAUUUCCCAGCCUUGUUUGGAGAUGUGAAGUUUGUGUGUGUUGGUGGAAGCCCCUCCCGGAUGAAAGCCUUCAUCAGGUGCGUUGGUGCAGAGCUGGGCCUUGACUGCCCAGGUAGAGACUAUCCCAACAUCUGUGCGGGAACUGACCGCUAUGCCAUGUAUAAAGUAGGACCGGUGCUGUCUGUCAGUCAUGGUAUGGGCAUUCCUUCUAUCUCAAUCAUGUUGCAUGAGCUCAUAAAGCUGCUGUACUAUGCCCGGUGCUCCAACGUCACUAUCAYCCGCAUUGGCACUUCUGGUGGGAUAGGUCUGGAGCCCGGCACUGUGGUCAYAm6ACAGAGCAGGCAGUGGAUACCUGCUUCAAGGCAGAGUUUGAGCAGAUUGUCCUGGGGAAGCGGGUCAYCCGGAAAACGGACCUUAm6ACAAGAAGCUGGUGCAGGAGCUGUUGCUGUGUUCUGCAGAGCUGAGCGAGUUCACCACAGUGGUGGGGAACACCAUGUGCACCUUGGACUUCUAUGAAGGGCAAGGCCGUCUGGAUGGGGCUCUCUGCUCCUACACGGAGAAGGACAAGCAGGCGUAUCUGGAGGCAGCCUAUGCAGCCGGCGUCCGCAAUAUCGAGAUGGAGUCCUCGGUGUUUGCCGCCAUGUGCAGCGCCUGCGGCCUCCAAGCGGCCGUGGUGUGUGUCACCCYCCUGAm6ACCGCCUGGAAGGGGACCAGAUCAGCAGCCCUCGCAAUGUGCUCAGCGAGUACCAGCAGAGGCCGCAGCGGCUGGUGAGCUACUUCAUCAAGAAGAAACUGAGCAAGGCCUGAGCGCUGCCCUGCACCYCCGCAGACCUGCUGUGAUGACUUGCCAUUAAAAGCAUUGUCCAAAAUCCCCUGUUGUGUGGACUUUGAGCACACUUUACACAAGAAUCUAGAAAAUCAGAUCGCGAUUAAGAGACAGAGAAUCUUGGAUUAACCGCAUGGGAGAUGUUCUUCCUUUUGAAGUUUCAUUGGAGCAUUUUCAAUGAUGUUAGCCUGAUUUGGGGUUUCUUCAAGAACAUUCUACCAAAUUUUUGUACUAUUUCUAGGGAAAUUUUUCAGACUUUAAAAUUCUAAUGGUAGUCAGAUUUCAUGUCACUAAACAAGAAAUCUGACAAUAGUGCCAGGAAACUAAUUUCCUGAUACAUUAAAAAAAUUCCAUGCA
Sequence (MODOMICS CODE ENCODING)	GCGGGAACUCCCAGGAUCAGGAAGGUCCCAGAGAAACUCCCCAGGGGGGAAGCCGAGGCCGUCCAGAGAGAUCCAGGGUACACACAGUGACAGUGCCAGCUCCACAUUCCCGACCACCGGGCCAGGGCUGGUUCCACGCUGUCAUUUCUCUCCGCUGGCCCCAGCCGCGGGGCCACCGCCAGACAGACAGACCGGGGAUCCUGCCUGGCGGCGUGACCUUGGGUUAGUCCUAGAGCCGCUUCUAGCCCGGUUUCCUCCGCCCCAGGUUAGGACCACGUGGGGCGGGGCCGCUCGCAGACUCCAUAUGAGAUUCACCUCGCAGGUGGUUCCCUCAUUCGAGUGCUCCGGCGCACAGACCCGCGCCCCGCCGUCUGCGAGCCUCCCGAGAGCCGUCCCUUCGUCCGGCCCUGGAGCAUUGCGUUUGUCGCCGGUGUCGCAGUGCGAGGAUGGCGCCGCGGGUGUAGCGGCUCUCUGCGCAGGCCGAGUGGGCUUGGUGAGGUGACUCGCGGUCGCGGGUGACUCGCCGGCAGGACACUGCCUGGAACGCCUGGAGCGCCUCCCACUGCAGACGUCUGUCCGCCUCCAGCCGCUCUCCUCUGACGGGUCCUGCCUCAGUUGGCGGAAUGGCGGCCACGGGAGCCAAUGCAGAGAAAGCUGAAAGUCACAAUGAUUGCCCCGUCAGACUUUUAAAUCCAAACAUAGCAAAAAUGAAAGAAGAUAUUCUCUAUCAUUUCAAUCUCACCACUAGCAGACACAAUUUCCCAGCCUUGUUUGGAGAUGUGAAGUUUGUGUGUGUUGGUGGAAGCCCCUCCCGGAUGAAAGCCUUCAUCAGGUGCGUUGGUGCAGAGCUGGGCCUUGACUGCCCAGGUAGAGACUAUCCCAACAUCUGUGCGGGAACUGACCGCUAUGCCAUGUAUAAAGUAGGACCGGUGCUGUCUGUCAGUCAUGGUAUGGGCAUUCCUUCUAUCUCAAUCAUGUUGCAUGAGCUCAUAAAGCUGCUGUACUAUGCCCGGUGCUCCAACGUCACUAUCA2000000009UCCGCAUUGGCACUUCUGGUGGGAUAGGUCUGGAGCCCGGCACUGUGGUCA2000000009UA2000000006ACAGAGCAGGCAGUGGAUACCUGCUUCAAGGCAGAGUUUGAGCAGAUUGUCCUGGGGAAGCGGGUCA2000000009UCCGGAAAACGGACCUUA2000000006ACAAGAAGCUGGUGCAGGAGCUGUUGCUGUGUUCUGCAGAGCUGAGCGAGUUCACCACAGUGGUGGGGAACACCAUGUGCACCUUGGACUUCUAUGAAGGGCAAGGCCGUCUGGAUGGGGCUCUCUGCUCCUACACGGAGAAGGACAAGCAGGCGUAUCUGGAGGCAGCCUAUGCAGCCGGCGUCCGCAAUAUCGAGAUGGAGUCCUCGGUGUUUGCCGCCAUGUGCAGCGCCUGCGGCCUCCAAGCGGCCGUGGUGUGUGUCACCC2000000009UCCUGA2000000006ACCGCCUGGAAGGGGACCAGAUCAGCAGCCCUCGCAAUGUGCUCAGCGAGUACCAGCAGAGGCCGCAGCGGCUGGUGAGCUACUUCAUCAAGAAGAAACUGAGCAAGGCCUGAGCGCUGCCCUGCACC2000000009UCCGCAGACCUGCUGUGAUGACUUGCCAUUAAAAGCAUUGUCCAAAAUCCCCUGUUGUGUGGACUUUGAGCACACUUUACACAAGAAUCUAGAAAAUCAGAUCGCGAUUAAGAGACAGAGAAUCUUGGAUUAACCGCAUGGGAGAUGUUCUUCCUUUUGAAGUUUCAUUGGAGCAUUUUCAAUGAUGUUAGCCUGAUUUGGGGUUUCUUCAAGAACAUUCUACCAAAUUUUUGUACUAUUUCUAGGGAAAUUUUUCAGACUUUAAAAUUCUAAUGGUAGUCAGAUUUCAUGUCACUAAACAAGAAAUCUGACAAUAGUGCCAGGAAACUAAUUUCCUGAUACAUUAAAAAAAUUCCAUGCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1033	1084	1086	1153	1171	1438	1444	1572
Modification Positions	Y	Y	m6A	Y	m6A	Y	m6A	Y
Genomic Coordinates	7:48103385:+	7:48106897:+	7:48106899:+	7:48106966:+	7:48106984:+	7:48108239:+	7:48108245:+	7:48108373:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 kx7BHU7ZycYE Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8