Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000265393
Gene ID: ENSG00000106052
Gene Name: TAX1BP1
Sequence (UNICHARACTER ENCODING) GGAAGAGACCGCCCCGUGGGCGGAAGUGACGCAAGGCCUACUGUCGGCUGGGAGGGGAGGUGUAGCCGGUCUUUGGGGGUAGGCGGUAGUGGCGGAAGAGGUUCGGCGGCUGAUGGCGGAUCAGGAUCGGAAGCCUGCGUAЖCUUUCUCCCUUGAUCCGGGAGUCUUUCCACUGGAUUCACAAUGACAPCCUUUCAAGAAGUCCCAUUGCAGACUUCCAACUUUGCCCAUGUCAUCUUUCAAAAUGUGGCCAAGAGUUACCUUCCUAAUGCACACCUGGAAUGUCAUUACACCUUAACUCCAUAUAUUCAPCCACAPCCAAAAGAUUGGGUUGGUAUAUUCAAGGUUGGAUGGAGUACUGCUCGUGAUUAUUACACGUUUUUAUGGUCCCCUAUGCCUGAACAUUAUGUGGAAGGAUCAACAGUCAAUUGUGUACUAGCAUUCCAAGGAUAUUACCUUCCAAAUGAUGAUGGAGAAUUUUAUCAGUUCUGUUACGUUACCCAPAAGGGUGAAAUUCGUGGAGCAAGUACACCUUUCCAGUUUCGAGCUUCUUCUCCAGUUGAAGAGCUGCUUACUAUGGAAGAUGAAGGAAAUUCUGACAUGUUAGUGGUGACCACAAAAGCAGGCCUUCUUGAGUUGAAAAUUGAGAAAACCAUGAAAGAAAAAGAAGAACUGUUAAAGUUAAUUGCCGUUCUGGAAAAAGAAЖCAGCACAACUUCGAGAACAAGUUGGGAGAAUGGAAAGAGAACUUAACCAUGAGAAAGAAAGAUGUGACCAACUGCAAGCAGAACAAAAGGGUCUUACUGAAGUAЖCACAAAGCUUAAAAAUGGAAAAUGAAGAGUUUAAGAAGAGGUUCAGUGAUGCUACAPCCAAAGCCCAUCAGCUUGAGGAAGAUAUUGUGUCAGUAACACAUAAAGCAAUUGAAAAAGAAACCGAAUUAGACAGUUUAAAGGACAAACUCAAGAAGGCACAACAUGAAAGAGAACAACUUGAAUGUCAGUUGAAGACAGAGAAGGAUGAAAAGGAACUPUAUAAGGUACAUUUGAAGAAUACЖGAAAUAGAAAAUACCAAGCUUAUGUCAGAGGUCCAGACUPUAAAAAAUUUAGAUGGGAACAAAGAAAGCGUGAUUACUCAUUUCAAAGAAGAGAUUGGCAGGCUGCAGUUAUGUUUGGCUGAAAAGGAAAAUCUGCAAAGAACUUUCCUGCUUACAACCUCAAGUAAAGAAGAUACUUGUUUUUUAAAGGAGCAACUUCGUAAAGCAGAGGAЖCAG#UUCAGGCAACUCGGCAAGAAGUUGUCUUUCUGGCUAAAGAACUCAGUGAUGCUGUCAACGUACGAGACAGAACGAUGGCAGЖCCUGCAUACUGCACGCUUGGAAAACGAGAAAGUGAAAAAGCAGUUAGCUGAUGCAGUGGCAGAACUUAAACUAAAUGCUAUGAAAAAAGAUCAGGACAAGACUGAUACACUGGAACACGAЖCUAAGAAGAGAAGUUGAAGAUCUGAAACUCCGUCUUCAGAUGGCUGCAGACCAUUAUAAAGAAAAAUUUAAGGAAUGCCAAAGGCUCCAAAAACAAAUAAACAAACUUUCAGAUCAAUCAGCUAAUAAUAAUAAUGUCUUCACAAAGAAAACGGGGAAUCAGCAGAAAGUGAAUGAUGCUUCAGUAAACACAGACCCAGCCACUUCUGCCUCUACUGUAGAUGUAAAGCCAUCACCUUCUGCAGCAGAGGCAGAUUUUGACAUAGUAACAAAGGGGCAAGUCUGUGAAAUGACCAAAGAAAUUGCUGACAAAACAGAAAAGUAUAAUAAAUGUAAЖCAACUCUUGCAGGAUGAGAAAGCAAAAUGCAAUAAAUAUGCUGAUGAЖCUUGCAAAAAUGGAGCUGAAAUGGAAAGAACAAGUGAAAAUUGCUGAAAAUGUAAAЖCUUGAACUAGCUGAAGUACAGGACAAUUAUAAAGAACUUAAAAGGAGUCUAGAAAAUCCAGCAGAAAGGAAAAUGGAAGAUGGAGCAGAUGGUGCUUUUUACCCAGAUGAAAUACAAAGGCCACCUGUCAGAGUCCCCUCUUGGGGACUGGAAGACAAUGUUGUCUGCAGCCAGCCUGCUCGAAACUPUAGUCGGCCUGAUGGCUUAGAGGACUCUGAGGAUAGCAAAGAAGAUGAGAAUGUGCCUACUGCUCCUGAUCCUCCAAGUCAACAUUUACGUGGGCAUGGGACAGGCUUUUGCUUUGAUUCCAGCUUUGAUGUUCACAAGAAGUGUCCCCUCUGUGAGUUAAUGUUUCCUCCUAACUAUGAUCAGAGCAAAUUUGAAGAACAUGUUGAAAGUCACUGGAAGGUGUGCCCGAUGUGCAGCGAGCAGUUCCCUCCUGACUAUGACCAGCAGGUGUUUGAAAGGCAUGUGCAGACCCAUUUUGAUCAGAAUGUUCUAAAUUUUGACUAGUUACUUUUUAUUAUGAGUUAAUAUAGUUUAGBAGUAAAAAAAAAAAAAAAAA
Sequence (SHORT NAMES ENCODING) GGAAGAGACCGCCCCGUGGGCGGAAGUGACGCAAGGCCUACUGUCGGCUGGGAGGGGAGGUGUAGCCGGUCUUUGGGGGUAGGCGGUAGUGGCGGAAGAGGUUCGGCGGCUGAUGGCGGAUCAGGAUCGGAAGCCUGCGUAm6ACUUUCUCCCUUGAUCCGGGAGUCUUUCCACUGGAUUCACAAUGACAYCCUUUCAAGAAGUCCCAUUGCAGACUUCCAACUUUGCCCAUGUCAUCUUUCAAAAUGUGGCCAAGAGUUACCUUCCUAAUGCACACCUGGAAUGUCAUUACACCUUAACUCCAUAUAUUCAYCCACAYCCAAAAGAUUGGGUUGGUAUAUUCAAGGUUGGAUGGAGUACUGCUCGUGAUUAUUACACGUUUUUAUGGUCCCCUAUGCCUGAACAUUAUGUGGAAGGAUCAACAGUCAAUUGUGUACUAGCAUUCCAAGGAUAUUACCUUCCAAAUGAUGAUGGAGAAUUUUAUCAGUUCUGUUACGUUACCCAYAAGGGUGAAAUUCGUGGAGCAAGUACACCUUUCCAGUUUCGAGCUUCUUCUCCAGUUGAAGAGCUGCUUACUAUGGAAGAUGAAGGAAAUUCUGACAUGUUAGUGGUGACCACAAAAGCAGGCCUUCUUGAGUUGAAAAUUGAGAAAACCAUGAAAGAAAAAGAAGAACUGUUAAAGUUAAUUGCCGUUCUGGAAAAAGAAm6ACAGCACAACUUCGAGAACAAGUUGGGAGAAUGGAAAGAGAACUUAACCAUGAGAAAGAAAGAUGUGACCAACUGCAAGCAGAACAAAAGGGUCUUACUGAAGUAm6ACACAAAGCUUAAAAAUGGAAAAUGAAGAGUUUAAGAAGAGGUUCAGUGAUGCUACAYCCAAAGCCCAUCAGCUUGAGGAAGAUAUUGUGUCAGUAACACAUAAAGCAAUUGAAAAAGAAACCGAAUUAGACAGUUUAAAGGACAAACUCAAGAAGGCACAACAUGAAAGAGAACAACUUGAAUGUCAGUUGAAGACAGAGAAGGAUGAAAAGGAACUYUAUAAGGUACAUUUGAAGAAUACm6AGAAAUAGAAAAUACCAAGCUUAUGUCAGAGGUCCAGACUYUAAAAAAUUUAGAUGGGAACAAAGAAAGCGUGAUUACUCAUUUCAAAGAAGAGAUUGGCAGGCUGCAGUUAUGUUUGGCUGAAAAGGAAAAUCUGCAAAGAACUUUCCUGCUUACAACCUCAAGUAAAGAAGAUACUUGUUUUUUAAAGGAGCAACUUCGUAAAGCAGAGGAm6ACAGGmUUCAGGCAACUCGGCAAGAAGUUGUCUUUCUGGCUAAAGAACUCAGUGAUGCUGUCAACGUACGAGACAGAACGAUGGCAGm6ACCUGCAUACUGCACGCUUGGAAAACGAGAAAGUGAAAAAGCAGUUAGCUGAUGCAGUGGCAGAACUUAAACUAAAUGCUAUGAAAAAAGAUCAGGACAAGACUGAUACACUGGAACACGAm6ACUAAGAAGAGAAGUUGAAGAUCUGAAACUCCGUCUUCAGAUGGCUGCAGACCAUUAUAAAGAAAAAUUUAAGGAAUGCCAAAGGCUCCAAAAACAAAUAAACAAACUUUCAGAUCAAUCAGCUAAUAAUAAUAAUGUCUUCACAAAGAAAACGGGGAAUCAGCAGAAAGUGAAUGAUGCUUCAGUAAACACAGACCCAGCCACUUCUGCCUCUACUGUAGAUGUAAAGCCAUCACCUUCUGCAGCAGAGGCAGAUUUUGACAUAGUAACAAAGGGGCAAGUCUGUGAAAUGACCAAAGAAAUUGCUGACAAAACAGAAAAGUAUAAUAAAUGUAAm6ACAACUCUUGCAGGAUGAGAAAGCAAAAUGCAAUAAAUAUGCUGAUGAm6ACUUGCAAAAAUGGAGCUGAAAUGGAAAGAACAAGUGAAAAUUGCUGAAAAUGUAAAm6ACUUGAACUAGCUGAAGUACAGGACAAUUAUAAAGAACUUAAAAGGAGUCUAGAAAAUCCAGCAGAAAGGAAAAUGGAAGAUGGAGCAGAUGGUGCUUUUUACCCAGAUGAAAUACAAAGGCCACCUGUCAGAGUCCCCUCUUGGGGACUGGAAGACAAUGUUGUCUGCAGCCAGCCUGCUCGAAACUYUAGUCGGCCUGAUGGCUUAGAGGACUCUGAGGAUAGCAAAGAAGAUGAGAAUGUGCCUACUGCUCCUGAUCCUCCAAGUCAACAUUUACGUGGGCAUGGGACAGGCUUUUGCUUUGAUUCCAGCUUUGAUGUUCACAAGAAGUGUCCCCUCUGUGAGUUAAUGUUUCCUCCUAACUAUGAUCAGAGCAAAUUUGAAGAACAUGUUGAAAGUCACUGGAAGGUGUGCCCGAUGUGCAGCGAGCAGUUCCCUCCUGACUAUGACCAGCAGGUGUUUGAAAGGCAUGUGCAGACCCAUUUUGAUCAGAAUGUUCUAAAUUUUGACUAGUUACUUUUUAUUAUGAGUUAAUAUAGUUUAGCmAGUAAAAAAAAAAAAAAAAA
Sequence (MODOMICS CODE ENCODING) GGAAGAGACCGCCCCGUGGGCGGAAGUGACGCAAGGCCUACUGUCGGCUGGGAGGGGAGGUGUAGCCGGUCUUUGGGGGUAGGCGGUAGUGGCGGAAGAGGUUCGGCGGCUGAUGGCGGAUCAGGAUCGGAAGCCUGCGUA2000000006ACUUUCUCCCUUGAUCCGGGAGUCUUUCCACUGGAUUCACAAUGACA2000000009UCCUUUCAAGAAGUCCCAUUGCAGACUUCCAACUUUGCCCAUGUCAUCUUUCAAAAUGUGGCCAAGAGUUACCUUCCUAAUGCACACCUGGAAUGUCAUUACACCUUAACUCCAUAUAUUCA2000000009UCCACA2000000009UCCAAAAGAUUGGGUUGGUAUAUUCAAGGUUGGAUGGAGUACUGCUCGUGAUUAUUACACGUUUUUAUGGUCCCCUAUGCCUGAACAUUAUGUGGAAGGAUCAACAGUCAAUUGUGUACUAGCAUUCCAAGGAUAUUACCUUCCAAAUGAUGAUGGAGAAUUUUAUCAGUUCUGUUACGUUACCCA2000000009UAAGGGUGAAAUUCGUGGAGCAAGUACACCUUUCCAGUUUCGAGCUUCUUCUCCAGUUGAAGAGCUGCUUACUAUGGAAGAUGAAGGAAAUUCUGACAUGUUAGUGGUGACCACAAAAGCAGGCCUUCUUGAGUUGAAAAUUGAGAAAACCAUGAAAGAAAAAGAAGAACUGUUAAAGUUAAUUGCCGUUCUGGAAAAAGAA2000000006ACAGCACAACUUCGAGAACAAGUUGGGAGAAUGGAAAGAGAACUUAACCAUGAGAAAGAAAGAUGUGACCAACUGCAAGCAGAACAAAAGGGUCUUACUGAAGUA2000000006ACACAAAGCUUAAAAAUGGAAAAUGAAGAGUUUAAGAAGAGGUUCAGUGAUGCUACA2000000009UCCAAAGCCCAUCAGCUUGAGGAAGAUAUUGUGUCAGUAACACAUAAAGCAAUUGAAAAAGAAACCGAAUUAGACAGUUUAAAGGACAAACUCAAGAAGGCACAACAUGAAAGAGAACAACUUGAAUGUCAGUUGAAGACAGAGAAGGAUGAAAAGGAACU2000000009UUAUAAGGUACAUUUGAAGAAUAC2000000006AGAAAUAGAAAAUACCAAGCUUAUGUCAGAGGUCCAGACU2000000009UUAAAAAAUUUAGAUGGGAACAAAGAAAGCGUGAUUACUCAUUUCAAAGAAGAGAUUGGCAGGCUGCAGUUAUGUUUGGCUGAAAAGGAAAAUCUGCAAAGAACUUUCCUGCUUACAACCUCAAGUAAAGAAGAUACUUGUUUUUUAAAGGAGCAACUUCGUAAAGCAGAGGA2000000006ACAG2000000090GUUCAGGCAACUCGGCAAGAAGUUGUCUUUCUGGCUAAAGAACUCAGUGAUGCUGUCAACGUACGAGACAGAACGAUGGCAG2000000006ACCUGCAUACUGCACGCUUGGAAAACGAGAAAGUGAAAAAGCAGUUAGCUGAUGCAGUGGCAGAACUUAAACUAAAUGCUAUGAAAAAAGAUCAGGACAAGACUGAUACACUGGAACACGA2000000006ACUAAGAAGAGAAGUUGAAGAUCUGAAACUCCGUCUUCAGAUGGCUGCAGACCAUUAUAAAGAAAAAUUUAAGGAAUGCCAAAGGCUCCAAAAACAAAUAAACAAACUUUCAGAUCAAUCAGCUAAUAAUAAUAAUGUCUUCACAAAGAAAACGGGGAAUCAGCAGAAAGUGAAUGAUGCUUCAGUAAACACAGACCCAGCCACUUCUGCCUCUACUGUAGAUGUAAAGCCAUCACCUUCUGCAGCAGAGGCAGAUUUUGACAUAGUAACAAAGGGGCAAGUCUGUGAAAUGACCAAAGAAAUUGCUGACAAAACAGAAAAGUAUAAUAAAUGUAA2000000006ACAACUCUUGCAGGAUGAGAAAGCAAAAUGCAAUAAAUAUGCUGAUGA2000000006ACUUGCAAAAAUGGAGCUGAAAUGGAAAGAACAAGUGAAAAUUGCUGAAAAUGUAAA2000000006ACUUGAACUAGCUGAAGUACAGGACAAUUAUAAAGAACUUAAAAGGAGUCUAGAAAAUCCAGCAGAAAGGAAAAUGGAAGAUGGAGCAGAUGGUGCUUUUUACCCAGAUGAAAUACAAAGGCCACCUGUCAGAGUCCCCUCUUGGGGACUGGAAGACAAUGUUGUCUGCAGCCAGCCUGCUCGAAACU2000000009UUAGUCGGCCUGAUGGCUUAGAGGACUCUGAGGAUAGCAAAGAAGAUGAGAAUGUGCCUACUGCUCCUGAUCCUCCAAGUCAACAUUUACGUGGGCAUGGGACAGGCUUUUGCUUUGAUUCCAGCUUUGAUGUUCACAAGAAGUGUCCCCUCUGUGAGUUAAUGUUUCCUCCUAACUAUGAUCAGAGCAAAUUUGAAGAACAUGUUGAAAGUCACUGGAAGGUGUGCCCGAUGUGCAGCGAGCAGUUCCCUCCUGACUAUGACCAGCAGGUGUUUGAAAGGCAUGUGCAGACCCAUUUUGAUCAGAAUGUUCUAAAUUUUGACUAGUUACUUUUUAUUAUGAGUUAAUAUAGUUUAG2000000090CAGUAAAAAAAAAAAAAAAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 142 189 311 317 503 705 810 867 1028 1052 1092 1265 1269 1351 1472 1808 1856 1913 2101 2458
Modification Positions m6A Y Y Y Y m6A m6A Y Y m6A Y m6A Gm m6A m6A m6A m6A m6A Y Cm
Genomic Coordinates 7:27740236:+ 7:27748531:+ 7:27748653:+ 7:27748659:+ 7:27765889:+ 7:27769745:+ 7:27785178:+ 7:27785235:+ 7:27785483:+ 7:27787435:+ 7:27787475:+ 7:27792050:+ 7:27792054:+ 7:27792136:+ 7:27793092:+ 7:27796207:+ 7:27800000:+ 7:27800057:+ 7:27816998:+ 7:27828861:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
jaSvBXBkn3xs
YkSG92k4EHDM
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
jaSvBXBkn3xs
YkSG92k4EHDM