Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000359735
Gene ID: ENSG00000197008
Gene Name: ZNF138
Sequence (UNICHARACTER ENCODING) GGAGCGGACAUGACGUCUUCCGGGAGGCGGCGGGGUCUUUGUCUCGCUGCAGCGGGUGCUGCAGGUCUGGCCUUCACUUUUCUGCGUCCUCUUACUCCUAGAGGCCCAGCCUCUGUGGCGCUGUGAUCUGGUUAUUGGGAGAUUCACAGCUAAGACGCCAGGAUCCCCCGGAAGCCUAGAAAUGGGACCACUGACAUUUAUGGAUGUGGCCAUAGAGUUCUCUUUGGAGGAGUGGCAGUGCCUGGACACUGCACAGCGGAAUGUAUAUAGGCAUGUGAUGUUAGAGAACUACAGAAACCUGGUUUUCUUGGCUGUAGCAUUUACCUUUGAUCUCAGUGGACUCAACAUUUUGUCAUUCCAAAGUAUCCUGCCAUUUGUUUCAGCACUUUAUGUCAUGGGAAACAGAAACCAGUGUCUGCAAAAGCACCUAGAAGCCAGAAAUAAAGAUCUCUGUGUUCUCGUUUUGCCCAAGACCUUUGGCUAGAGCAGAACAUAAAAGAUUCUUUCCAAAAAGUGACACUGAGCAGAUAUGGAAAAUAUGGACAUAAGAAUUUACAGUUAAGAAAAGGCUGUAAAAGUGUGGAUGAGUGUAAGGGACACCAAGGAGGUUUUAAUGGЖCUUAACCAAUGUUUGAAAAUUACCACAAGCAAAAUAUUUCAAUGUAAUAAAUAUGUAAAAGUCAUGCAUAAAUUUUCAAAUUCAAAUAGACACAAGAUAAGACAUACUGAAAAUAAACAUUUCAGAUGUAAAGAAUGUGACAAAUCACUUUGCAUGCUUUCACGCCUAACUCAACAUAAAAAAAUUCAUACUAGAGAGAAUUUCUACAAAUGUGAAGAGUGUGGAAAAACCUUUAACUGGUCCACAAACCUUUCUAAACCUAAGAAAAUUCAUACUGGAGAAAAACCCUACAAAUGUGAAGUAUGUGGAAAAGCCUUUCACCAAUCCUCAAUCCUUACUAAACAUAAGAUAAUUCGUACUGGAGAAAAACCCUAUAAAUGUGCACACUGUGGCAAAGCCUUUAAACAGUCCUCACACCUUACUAGACAUAAGAUAAUUCAUACUGAAGAGAAACCCUACAAAUGUGAЖCAAUGUGGCAAGGUCUUUAAGCAGUCCCCAACCCUUACUAAACAUCAGAUAAUUUAUACUGGAGAGGAACCAUACAAAUGUGAGGAAUGUGGCAAAGCUUUUAACCUAUCUUAACAACUUACUGAACAUAAGAAAAUUUACACUAGAGAGAAAGCCUACAAAUGUGAAGAAUGUGGCAAAGCCUUUAACCAGUUUUCAACCCUUAUUACACAUAAGAUAAUUCAUAGCGGAGAGAAACCCCACAAAUGUGAAGAAUGUGGCAGAGCUUUUAACCAGUCCGCAAAGCUCACUGAACAUAAGUUAAUUCAUACUGGAGAAAAACCCUACAAAUGUAAAGAAUGUGGAAAAGCUUUUCACCGAUACUCAAUCCUUAGUACACAUAAGAAAAUUCAUACUGGGGAGAAACCCCACAAAUGUGGAGAAUGCGGAAAAGCCUUUAACUGGUCCUCAACUCUUAUUACACAUAAGAUAAUUCACAGUGGAGAAAAACCCUACAAAUGUGAAGAAUGUGGCAAAGCUUUUAACCAGUCCUCACACCUUAUGAGACAUAAGAAAAUUCAUAGUAAAGAGAAACCCUACAAAUGUGAЖCAGUGUGGCAAGGUCUUUAAGAAGUCCUCAACUCUUACUGCACAUAAGAUCAUUCAUACUGGAGAGAAACCUUACAAAUGUGAGGAAUGUGGCAAAGGUUUUAGCCAACUCUCAAACCUUACUAAACACAAGAAGAUUCAUACUAGAGAGAAACCCUACAAAUGUGAAGAAUGUGGCAUAUCUUUUAACCAGUUCUCACAACUUGCUAUACAUAAGAUGAUUCACACUUGAAUGAAACCCUACAAAUGUGAЖCGAUGUGGCAGUUGUUUUAACUAGUUCUCGAЖCUUUACUAUGCAUAAGAAAAUUCAAACUGGAGAGAAACUCUACAAAUGUGAAGAAUGUGGCAAAGCUUUUAACCAAGUCUCAACACUUACUAUACAUAAGAUAAUUUAUACUGGAGCAAAACCUUGGAAAUUCAAAGAAUGUGGUAAAACUUACAAUCCUCAAAACUUCUUACACCUAAAAUUCAUGCAGGAGAGAAACACCACAAAUGUGAAAAAUUUGGUAAAUUCUUUAACAAGUCUUCAACCCUUUCUGCACAUAAUAUAAUUCAUACUGGAGAGAAACCCCACAAAUAUGAAGAAUGUGGUAAUGCUUUUAACCAAUUCUCAAAUCUUACUAAACAAAAUUAAUACUGAAAAUGUUACAAACCAGAAAAAUGUGAAAAUGAUUUUAACAAAACCUUCAAAUUUUUCUAAACAUAAAGGAAAUCAUACUGGUAAGAAAUUAUAAAAAUGUGAAGAAUGUGACAAAGCCUPUAAAUGGUUGUCACACUUGAUUGUAGGUAAGAUAAUUCAUACUGGCAGAAACUCCCAGAAGUGUGAAGAAUAUGGCAAAACUPUAAUUCCUAUACCUUAUUGCACAGGAAAGCAUUUAUACUUCAGAAAAUGUUGUACUGAUAUAAAGAAUGUAGAAAAGCCAUUAAUAUGUGCUUACAUCUUAUUCAACAUUAGAGAGUUAGUACUUAAUAAAAGCAUUAUAAAUGCAAUUACUGUCAAAACUCAG
Sequence (SHORT NAMES ENCODING) GGAGCGGACAUGACGUCUUCCGGGAGGCGGCGGGGUCUUUGUCUCGCUGCAGCGGGUGCUGCAGGUCUGGCCUUCACUUUUCUGCGUCCUCUUACUCCUAGAGGCCCAGCCUCUGUGGCGCUGUGAUCUGGUUAUUGGGAGAUUCACAGCUAAGACGCCAGGAUCCCCCGGAAGCCUAGAAAUGGGACCACUGACAUUUAUGGAUGUGGCCAUAGAGUUCUCUUUGGAGGAGUGGCAGUGCCUGGACACUGCACAGCGGAAUGUAUAUAGGCAUGUGAUGUUAGAGAACUACAGAAACCUGGUUUUCUUGGCUGUAGCAUUUACCUUUGAUCUCAGUGGACUCAACAUUUUGUCAUUCCAAAGUAUCCUGCCAUUUGUUUCAGCACUUUAUGUCAUGGGAAACAGAAACCAGUGUCUGCAAAAGCACCUAGAAGCCAGAAAUAAAGAUCUCUGUGUUCUCGUUUUGCCCAAGACCUUUGGCUAGAGCAGAACAUAAAAGAUUCUUUCCAAAAAGUGACACUGAGCAGAUAUGGAAAAUAUGGACAUAAGAAUUUACAGUUAAGAAAAGGCUGUAAAAGUGUGGAUGAGUGUAAGGGACACCAAGGAGGUUUUAAUGGm6ACUUAACCAAUGUUUGAAAAUUACCACAAGCAAAAUAUUUCAAUGUAAUAAAUAUGUAAAAGUCAUGCAUAAAUUUUCAAAUUCAAAUAGACACAAGAUAAGACAUACUGAAAAUAAACAUUUCAGAUGUAAAGAAUGUGACAAAUCACUUUGCAUGCUUUCACGCCUAACUCAACAUAAAAAAAUUCAUACUAGAGAGAAUUUCUACAAAUGUGAAGAGUGUGGAAAAACCUUUAACUGGUCCACAAACCUUUCUAAACCUAAGAAAAUUCAUACUGGAGAAAAACCCUACAAAUGUGAAGUAUGUGGAAAAGCCUUUCACCAAUCCUCAAUCCUUACUAAACAUAAGAUAAUUCGUACUGGAGAAAAACCCUAUAAAUGUGCACACUGUGGCAAAGCCUUUAAACAGUCCUCACACCUUACUAGACAUAAGAUAAUUCAUACUGAAGAGAAACCCUACAAAUGUGAm6ACAAUGUGGCAAGGUCUUUAAGCAGUCCCCAACCCUUACUAAACAUCAGAUAAUUUAUACUGGAGAGGAACCAUACAAAUGUGAGGAAUGUGGCAAAGCUUUUAACCUAUCUUAACAACUUACUGAACAUAAGAAAAUUUACACUAGAGAGAAAGCCUACAAAUGUGAAGAAUGUGGCAAAGCCUUUAACCAGUUUUCAACCCUUAUUACACAUAAGAUAAUUCAUAGCGGAGAGAAACCCCACAAAUGUGAAGAAUGUGGCAGAGCUUUUAACCAGUCCGCAAAGCUCACUGAACAUAAGUUAAUUCAUACUGGAGAAAAACCCUACAAAUGUAAAGAAUGUGGAAAAGCUUUUCACCGAUACUCAAUCCUUAGUACACAUAAGAAAAUUCAUACUGGGGAGAAACCCCACAAAUGUGGAGAAUGCGGAAAAGCCUUUAACUGGUCCUCAACUCUUAUUACACAUAAGAUAAUUCACAGUGGAGAAAAACCCUACAAAUGUGAAGAAUGUGGCAAAGCUUUUAACCAGUCCUCACACCUUAUGAGACAUAAGAAAAUUCAUAGUAAAGAGAAACCCUACAAAUGUGAm6ACAGUGUGGCAAGGUCUUUAAGAAGUCCUCAACUCUUACUGCACAUAAGAUCAUUCAUACUGGAGAGAAACCUUACAAAUGUGAGGAAUGUGGCAAAGGUUUUAGCCAACUCUCAAACCUUACUAAACACAAGAAGAUUCAUACUAGAGAGAAACCCUACAAAUGUGAAGAAUGUGGCAUAUCUUUUAACCAGUUCUCACAACUUGCUAUACAUAAGAUGAUUCACACUUGAAUGAAACCCUACAAAUGUGAm6ACGAUGUGGCAGUUGUUUUAACUAGUUCUCGAm6ACUUUACUAUGCAUAAGAAAAUUCAAACUGGAGAGAAACUCUACAAAUGUGAAGAAUGUGGCAAAGCUUUUAACCAAGUCUCAACACUUACUAUACAUAAGAUAAUUUAUACUGGAGCAAAACCUUGGAAAUUCAAAGAAUGUGGUAAAACUUACAAUCCUCAAAACUUCUUACACCUAAAAUUCAUGCAGGAGAGAAACACCACAAAUGUGAAAAAUUUGGUAAAUUCUUUAACAAGUCUUCAACCCUUUCUGCACAUAAUAUAAUUCAUACUGGAGAGAAACCCCACAAAUAUGAAGAAUGUGGUAAUGCUUUUAACCAAUUCUCAAAUCUUACUAAACAAAAUUAAUACUGAAAAUGUUACAAACCAGAAAAAUGUGAAAAUGAUUUUAACAAAACCUUCAAAUUUUUCUAAACAUAAAGGAAAUCAUACUGGUAAGAAAUUAUAAAAAUGUGAAGAAUGUGACAAAGCCUYUAAAUGGUUGUCACACUUGAUUGUAGGUAAGAUAAUUCAUACUGGCAGAAACUCCCAGAAGUGUGAAGAAUAUGGCAAAACUYUAAUUCCUAUACCUUAUUGCACAGGAAAGCAUUUAUACUUCAGAAAAUGUUGUACUGAUAUAAAGAAUGUAGAAAAGCCAUUAAUAUGUGCUUACAUCUUAUUCAACAUUAGAGAGUUAGUACUUAAUAAAAGCAUUAUAAAUGCAAUUACUGUCAAAACUCAG
Sequence (MODOMICS CODE ENCODING) GGAGCGGACAUGACGUCUUCCGGGAGGCGGCGGGGUCUUUGUCUCGCUGCAGCGGGUGCUGCAGGUCUGGCCUUCACUUUUCUGCGUCCUCUUACUCCUAGAGGCCCAGCCUCUGUGGCGCUGUGAUCUGGUUAUUGGGAGAUUCACAGCUAAGACGCCAGGAUCCCCCGGAAGCCUAGAAAUGGGACCACUGACAUUUAUGGAUGUGGCCAUAGAGUUCUCUUUGGAGGAGUGGCAGUGCCUGGACACUGCACAGCGGAAUGUAUAUAGGCAUGUGAUGUUAGAGAACUACAGAAACCUGGUUUUCUUGGCUGUAGCAUUUACCUUUGAUCUCAGUGGACUCAACAUUUUGUCAUUCCAAAGUAUCCUGCCAUUUGUUUCAGCACUUUAUGUCAUGGGAAACAGAAACCAGUGUCUGCAAAAGCACCUAGAAGCCAGAAAUAAAGAUCUCUGUGUUCUCGUUUUGCCCAAGACCUUUGGCUAGAGCAGAACAUAAAAGAUUCUUUCCAAAAAGUGACACUGAGCAGAUAUGGAAAAUAUGGACAUAAGAAUUUACAGUUAAGAAAAGGCUGUAAAAGUGUGGAUGAGUGUAAGGGACACCAAGGAGGUUUUAAUGG2000000006ACUUAACCAAUGUUUGAAAAUUACCACAAGCAAAAUAUUUCAAUGUAAUAAAUAUGUAAAAGUCAUGCAUAAAUUUUCAAAUUCAAAUAGACACAAGAUAAGACAUACUGAAAAUAAACAUUUCAGAUGUAAAGAAUGUGACAAAUCACUUUGCAUGCUUUCACGCCUAACUCAACAUAAAAAAAUUCAUACUAGAGAGAAUUUCUACAAAUGUGAAGAGUGUGGAAAAACCUUUAACUGGUCCACAAACCUUUCUAAACCUAAGAAAAUUCAUACUGGAGAAAAACCCUACAAAUGUGAAGUAUGUGGAAAAGCCUUUCACCAAUCCUCAAUCCUUACUAAACAUAAGAUAAUUCGUACUGGAGAAAAACCCUAUAAAUGUGCACACUGUGGCAAAGCCUUUAAACAGUCCUCACACCUUACUAGACAUAAGAUAAUUCAUACUGAAGAGAAACCCUACAAAUGUGA2000000006ACAAUGUGGCAAGGUCUUUAAGCAGUCCCCAACCCUUACUAAACAUCAGAUAAUUUAUACUGGAGAGGAACCAUACAAAUGUGAGGAAUGUGGCAAAGCUUUUAACCUAUCUUAACAACUUACUGAACAUAAGAAAAUUUACACUAGAGAGAAAGCCUACAAAUGUGAAGAAUGUGGCAAAGCCUUUAACCAGUUUUCAACCCUUAUUACACAUAAGAUAAUUCAUAGCGGAGAGAAACCCCACAAAUGUGAAGAAUGUGGCAGAGCUUUUAACCAGUCCGCAAAGCUCACUGAACAUAAGUUAAUUCAUACUGGAGAAAAACCCUACAAAUGUAAAGAAUGUGGAAAAGCUUUUCACCGAUACUCAAUCCUUAGUACACAUAAGAAAAUUCAUACUGGGGAGAAACCCCACAAAUGUGGAGAAUGCGGAAAAGCCUUUAACUGGUCCUCAACUCUUAUUACACAUAAGAUAAUUCACAGUGGAGAAAAACCCUACAAAUGUGAAGAAUGUGGCAAAGCUUUUAACCAGUCCUCACACCUUAUGAGACAUAAGAAAAUUCAUAGUAAAGAGAAACCCUACAAAUGUGA2000000006ACAGUGUGGCAAGGUCUUUAAGAAGUCCUCAACUCUUACUGCACAUAAGAUCAUUCAUACUGGAGAGAAACCUUACAAAUGUGAGGAAUGUGGCAAAGGUUUUAGCCAACUCUCAAACCUUACUAAACACAAGAAGAUUCAUACUAGAGAGAAACCCUACAAAUGUGAAGAAUGUGGCAUAUCUUUUAACCAGUUCUCACAACUUGCUAUACAUAAGAUGAUUCACACUUGAAUGAAACCCUACAAAUGUGA2000000006ACGAUGUGGCAGUUGUUUUAACUAGUUCUCGA2000000006ACUUUACUAUGCAUAAGAAAAUUCAAACUGGAGAGAAACUCUACAAAUGUGAAGAAUGUGGCAAAGCUUUUAACCAAGUCUCAACACUUACUAUACAUAAGAUAAUUUAUACUGGAGCAAAACCUUGGAAAUUCAAAGAAUGUGGUAAAACUUACAAUCCUCAAAACUUCUUACACCUAAAAUUCAUGCAGGAGAGAAACACCACAAAUGUGAAAAAUUUGGUAAAUUCUUUAACAAGUCUUCAACCCUUUCUGCACAUAAUAUAAUUCAUACUGGAGAGAAACCCCACAAAUAUGAAGAAUGUGGUAAUGCUUUUAACCAAUUCUCAAAUCUUACUAAACAAAAUUAAUACUGAAAAUGUUACAAACCAGAAAAAUGUGAAAAUGAUUUUAACAAAACCUUCAAAUUUUUCUAAACAUAAAGGAAAUCAUACUGGUAAGAAAUUAUAAAAAUGUGAAGAAUGUGACAAAGCCU2000000009UUAAAUGGUUGUCACACUUGAUUGUAGGUAAGAUAAUUCAUACUGGCAGAAACUCCCAGAAGUGUGAAGAAUAUGGCAAAACU2000000009UUAAUUCCUAUACCUUAUUGCACAGGAAAGCAUUUAUACUUCAGAAAAUGUUGUACUGAUAUAAAGAAUGUAGAAAAGCCAUUAAUAUGUGCUUACAUCUUAUUCAACAUUAGAGAGUUAGUACUUAAUAAAAGCAUUAUAAAUGCAAUUACUGUCAAAACUCAG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 618 1086 1674 1926 1958 2432 2515
Modification Positions m6A m6A m6A m6A m6A Y Y
Genomic Coordinates 7:64831620:+ 7:64832088:+ 7:64832676:+ 7:64832928:+ 7:64832960:+ 7:64833434:+ 7:64833517:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
msuJfBpJvM5H
VyCX26p5UBRL
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq
BtsJQJ3DteUq
a7o5Kmjr4Tdp
BtsJQJ3DteUq
a7o5Kmjr4Tdp